Wall clock time and date at job start Mon Mar 30 2020 02:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86791 * 119.99961 * 2 1 4 4 H 1.48503 * 109.47095 * 239.99301 * 3 2 1 5 5 H 1.48499 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47269 * 119.99944 * 3 2 1 7 7 C 1.40033 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.41331 * 120.00048 * 0.02562 * 7 2 1 10 10 C 1.40614 * 119.79143 * 180.02562 * 9 7 2 11 11 C 1.38298 * 119.13394 * 180.02562 * 10 9 7 12 12 C 1.38701 * 118.66926 * 359.97438 * 11 10 9 13 13 C 1.39633 * 119.49345 * 359.97438 * 12 11 10 14 14 N 1.39274 * 119.57281 * 179.97438 * 13 12 11 15 15 C 1.34769 * 120.00066 * 174.64191 * 14 13 12 16 16 O 1.21281 * 120.00077 * 5.14038 * 15 14 13 17 17 C 1.50697 * 120.00163 * 185.14533 * 15 14 13 18 18 C 1.53006 * 109.47478 * 179.97438 * 17 15 14 19 19 C 1.53773 * 113.61450 * 272.49884 * 18 17 15 20 20 C 1.53780 * 87.08085 * 220.01348 * 19 18 17 21 21 N 1.46894 * 113.61682 * 270.88320 * 20 19 18 22 22 C 1.53773 * 113.61340 * 174.99904 * 18 17 15 23 23 N 1.31928 * 120.85138 * 0.28067 * 13 12 11 24 24 H 0.96999 * 119.99855 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.43037 * 0.02562 * 10 9 7 26 26 H 1.07996 * 120.66685 * 179.97438 * 11 10 9 27 27 H 1.07998 * 120.24987 * 180.02562 * 12 11 10 28 28 H 0.97002 * 119.99588 * 354.64063 * 14 13 12 29 29 H 1.08994 * 109.47229 * 300.00078 * 17 15 14 30 30 H 1.09003 * 109.46982 * 60.00014 * 17 15 14 31 31 H 1.08999 * 112.84104 * 43.80366 * 18 17 15 32 32 H 1.08998 * 113.61718 * 334.56502 * 19 18 17 33 33 H 1.09003 * 113.61327 * 105.46828 * 19 18 17 34 34 H 1.09005 * 113.61048 * 139.97923 * 20 19 18 35 35 H 1.00900 * 111.00445 * 277.49407 * 21 20 19 36 36 H 1.00898 * 110.99939 * 41.45782 * 21 20 19 37 37 H 1.09003 * 113.61438 * 254.52887 * 22 18 17 38 38 H 1.09003 * 113.61723 * 25.43914 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0953 1.6963 -1.2124 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0075 -1.2128 0.0005 8 1 3.0875 -1.2128 0.0010 9 6 1.3008 -2.4367 0.0005 10 6 2.0083 -3.6519 0.0016 11 6 1.3031 -4.8416 0.0011 12 6 -0.0831 -4.7934 0.0000 13 6 -0.7279 -3.5549 0.0001 14 7 -2.1198 -3.5046 -0.0016 15 6 -2.7513 -2.3190 0.1074 16 8 -2.1110 -1.2891 0.1131 17 6 -4.2532 -2.2731 0.2225 18 6 -4.7121 -0.8177 0.3332 19 6 -4.7333 -0.2866 1.7762 20 6 -6.0452 0.4276 1.4105 21 7 -5.8480 1.7764 0.8630 22 6 -6.2409 -0.6522 0.3332 23 7 -0.0358 -2.4318 -0.0044 24 1 -0.4850 0.8400 -0.0004 25 1 3.0883 -3.6561 0.0029 26 1 1.8213 -5.7891 0.0015 27 1 -0.6592 -5.7069 0.0000 28 1 -2.6345 -4.3229 -0.0812 29 1 -4.6994 -2.7289 -0.6614 30 1 -4.5664 -2.8211 1.1112 31 1 -4.2014 -0.1585 -0.3687 32 1 -4.8557 -1.0672 2.5270 33 1 -3.9134 0.3951 2.0026 34 1 -6.7946 0.3961 2.2015 35 1 -5.7240 2.4521 1.6019 36 1 -5.0701 1.7958 0.2208 37 1 -6.6382 -0.2655 -0.6053 38 1 -6.7755 -1.5327 0.6896 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340868806.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:49 Heat of formation + Delta-G solvation = 14.225189 kcal Electronic energy + Delta-G solvation = -21239.552976 eV Core-core repulsion = 18082.155714 eV Total energy + Delta-G solvation = -3157.397262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12927 -40.17273 -38.92277 -35.88550 -34.80265 -33.30063 -32.22083 -31.19862 -29.59374 -27.43479 -26.50334 -24.57820 -23.38224 -22.73130 -20.82976 -19.78839 -19.56755 -18.01432 -17.56061 -16.97438 -16.46708 -16.37899 -16.26749 -15.89854 -15.53153 -14.97784 -14.69173 -14.55820 -14.41409 -13.86440 -13.69977 -13.32579 -13.08974 -12.87849 -12.75104 -12.58949 -12.48632 -12.33012 -11.81465 -11.78250 -11.46596 -11.30847 -10.97538 -10.84556 -10.51607 -9.89527 -9.62948 -9.05780 -8.79460 -8.05487 -6.42800 0.93109 1.25544 1.37145 1.48241 1.51380 2.23224 2.24537 2.43076 2.99231 3.53469 3.65375 3.75927 3.92491 4.05721 4.06956 4.15056 4.38068 4.60786 4.62491 4.76385 4.78152 4.86251 4.91206 4.95079 4.95917 5.03556 5.08616 5.20441 5.28164 5.32731 5.53094 5.68362 5.88363 5.92501 6.15350 6.21973 6.38417 6.51370 6.76967 6.88253 7.08866 7.79574 8.35975 8.55825 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014977 B = 0.006420 C = 0.004600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.124213 B = 4360.321588 C = 6085.527560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.686 5.686 2 C 0.011 3.989 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.468 4.468 8 H 0.084 0.916 9 C 0.236 3.764 10 C -0.333 4.333 11 C -0.036 4.036 12 C -0.349 4.349 13 C 0.348 3.652 14 N -0.660 5.660 15 C 0.454 3.546 16 O -0.460 6.460 17 C -0.112 4.112 18 C -0.095 4.095 19 C -0.170 4.170 20 C 0.073 3.927 21 N -0.836 5.836 22 C -0.115 4.115 23 N -0.507 5.507 24 H 0.269 0.731 25 H 0.102 0.898 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.420 0.580 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.034 0.966 34 H 0.102 0.898 35 H 0.348 0.652 36 H 0.339 0.661 37 H 0.070 0.930 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.016 -2.386 2.039 13.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.305 5.305 2 C -0.214 4.214 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.499 4.499 8 H 0.102 0.898 9 C 0.110 3.890 10 C -0.356 4.356 11 C -0.060 4.060 12 C -0.374 4.374 13 C 0.109 3.891 14 N -0.309 5.309 15 C 0.239 3.761 16 O -0.327 6.327 17 C -0.152 4.152 18 C -0.114 4.114 19 C -0.210 4.210 20 C -0.039 4.039 21 N -0.364 5.364 22 C -0.152 4.152 23 N -0.226 5.226 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.153 0.847 27 H 0.149 0.851 28 H 0.257 0.743 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.053 0.947 34 H 0.120 0.880 35 H 0.161 0.839 36 H 0.152 0.848 37 H 0.089 0.911 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.001 -0.694 1.750 14.127 hybrid contribution 2.094 -0.625 0.384 2.219 sum -11.906 -1.319 2.134 12.168 Atomic orbital electron populations 1.70528 1.07109 1.27869 1.25007 1.27008 0.96067 1.03845 0.94499 0.85424 0.78729 0.76661 0.79850 1.18495 1.19796 1.18567 1.19858 0.94387 0.90538 1.45085 0.89800 1.18890 0.88141 0.93321 0.88613 1.21801 0.99143 0.93939 1.20671 1.21034 0.93672 0.97265 0.93999 1.21002 0.95170 0.95884 1.25329 1.19236 0.85639 0.90977 0.93271 1.43558 1.03352 1.10915 1.73104 1.21975 0.91944 0.83950 0.78233 1.91127 1.67270 1.32505 1.41769 1.21676 0.89040 0.98853 1.05664 1.22207 0.96958 0.94875 0.97375 1.23806 0.98724 1.01182 0.97251 1.22487 0.95792 0.88345 0.97304 1.58782 1.49883 1.05913 1.21831 1.23091 0.93829 0.98870 0.99444 1.68690 1.07151 1.25407 1.21384 0.92017 0.87932 0.84658 0.85091 0.74285 0.86920 0.87012 0.91623 0.89257 0.94665 0.88000 0.83875 0.84801 0.91095 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -39.70 9.00 21.84 0.20 -39.50 16 2 C 0.01 0.63 5.50 85.29 0.47 1.10 16 3 Si 0.97 41.21 29.56 68.60 2.03 43.23 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.47 -27.12 9.14 23.47 0.21 -26.91 16 8 H 0.08 4.56 7.85 -2.91 -0.02 4.54 16 9 C 0.24 13.89 6.55 40.21 0.26 14.16 16 10 C -0.33 -17.19 9.83 22.86 0.22 -16.97 16 11 C -0.04 -1.58 10.15 22.39 0.23 -1.35 16 12 C -0.35 -15.11 9.95 22.72 0.23 -14.88 16 13 C 0.35 17.02 7.43 133.23 0.99 18.01 16 14 N -0.66 -25.17 5.38 -308.38 -1.66 -26.83 16 15 C 0.45 17.75 7.79 87.66 0.68 18.44 16 16 O -0.46 -23.30 11.53 -3.03 -0.03 -23.33 16 17 C -0.11 -2.81 5.54 29.85 0.17 -2.64 16 18 C -0.10 -2.49 2.81 -10.27 -0.03 -2.52 16 19 C -0.17 -4.38 7.35 31.12 0.23 -4.16 16 20 C 0.07 1.51 5.18 45.44 0.24 1.75 16 21 N -0.84 -18.36 9.64 -166.49 -1.60 -19.97 16 22 C -0.11 -2.19 7.44 31.12 0.23 -1.96 16 23 N -0.51 -29.46 5.74 -186.36 -1.07 -30.53 16 24 H 0.27 14.69 8.29 -92.71 -0.77 13.92 16 25 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 26 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 27 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 28 H 0.42 11.51 8.70 -92.71 -0.81 10.71 16 29 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.11 2.19 7.84 -2.39 -0.02 2.17 16 31 H 0.07 2.19 7.25 -2.39 -0.02 2.17 16 32 H 0.09 2.08 7.89 -2.39 -0.02 2.06 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.35 6.69 9.08 -89.69 -0.81 5.88 16 36 H 0.34 8.34 8.15 -89.70 -0.73 7.61 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.11 1.55 8.10 -2.39 -0.02 1.53 16 Total: -1.00 -74.69 316.70 0.74 -73.95 By element: Atomic # 1 Polarization: 42.15 SS G_CDS: -1.24 Total: 40.90 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 4.13 Total: -17.93 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -4.14 Total: -116.82 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.03 Total: -23.33 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -74.69 0.74 -73.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340868806.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.172 kcal (2) G-P(sol) polarization free energy of solvation -74.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds