Wall clock time and date at job start Mon Mar 30 2020 01:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42094 * 108.57846 * 2 1 4 4 O 1.42101 * 108.57328 * 228.97750 * 2 1 3 5 5 C 1.81399 * 101.92237 * 114.48990 * 2 1 3 6 6 C 1.52997 * 109.46899 * 179.97438 * 5 2 1 7 7 H 1.09003 * 110.87836 * 57.39423 * 6 5 2 8 8 C 1.55146 * 110.99432 * 293.54451 * 6 5 2 9 9 C 1.54313 * 103.01817 * 206.21940 * 8 6 5 10 10 N 1.47446 * 107.23765 * 22.28651 * 9 8 6 11 11 C 1.46894 * 110.99994 * 123.25808 * 10 9 8 12 12 C 1.52997 * 109.47515 * 69.87423 * 11 10 9 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00114 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46999 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46979 * 120.00420 * 18 16 14 21 21 H 1.48498 * 109.46942 * 240.00334 * 18 16 14 22 22 C 1.47841 * 108.56334 * 0.98850 * 10 9 8 23 23 H 1.09000 * 109.46554 * 305.50841 * 1 2 3 24 24 H 1.08998 * 109.46926 * 65.50594 * 1 2 3 25 25 H 1.08999 * 109.46815 * 185.51463 * 1 2 3 26 26 H 1.08999 * 109.47131 * 59.99778 * 5 2 1 27 27 H 1.08999 * 109.47012 * 299.99882 * 5 2 1 28 28 H 1.08996 * 110.69791 * 87.83586 * 8 6 5 29 29 H 1.09004 * 110.85322 * 324.67276 * 8 6 5 30 30 H 1.09005 * 109.88929 * 262.87767 * 9 8 6 31 31 H 1.09000 * 109.88875 * 141.69053 * 9 8 6 32 32 H 1.09002 * 109.47104 * 309.87155 * 11 10 9 33 33 H 1.08998 * 109.46828 * 189.87987 * 11 10 9 34 34 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 35 35 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 36 36 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 37 37 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 38 38 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 39 39 H 1.08999 * 110.37888 * 94.73662 * 22 10 9 40 40 H 1.09006 * 110.37050 * 217.07941 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8196 1.7978 7 1 4.1631 0.1653 1.7046 8 6 4.3320 -1.8209 0.7917 9 6 5.6154 -2.2820 1.5138 10 7 5.4176 -2.0387 2.9545 11 6 5.5899 -3.2768 3.7260 12 6 7.0639 -3.6866 3.7105 13 6 7.2432 -4.9765 4.5135 14 6 8.6950 -5.3804 4.4977 15 1 9.4175 -4.7771 3.9681 16 6 9.1009 -6.5195 5.1600 17 7 8.2211 -7.2538 5.8053 18 14 10.9003 -7.0205 5.1398 19 1 11.6799 -6.0342 4.3495 20 1 11.4188 -7.0604 6.5308 21 1 11.0328 -8.3650 4.5234 22 6 4.0665 -1.4730 3.1552 23 1 -0.3632 0.5969 0.8366 24 1 -0.3633 0.4261 -0.9352 25 1 -0.3633 -1.0229 0.0988 26 1 1.7611 -1.7370 1.6664 27 1 1.7611 -0.1172 2.4042 28 1 4.5755 -1.3226 -0.1466 29 1 3.6640 -2.6643 0.6168 30 1 6.4696 -1.7080 1.1546 31 1 5.7792 -3.3449 1.3364 32 1 4.9879 -4.0690 3.2810 33 1 5.2695 -3.1114 4.7547 34 1 7.6660 -2.8944 4.1556 35 1 7.3842 -3.8519 2.6818 36 1 6.9228 -4.8115 5.5423 37 1 6.6412 -5.7684 4.0681 38 1 8.5067 -8.0549 6.2716 39 1 3.3561 -2.2635 3.3967 40 1 4.0831 -0.7221 3.9452 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343795770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:39 Heat of formation + Delta-G solvation = -80.955113 kcal Electronic energy + Delta-G solvation = -19319.909693 eV Core-core repulsion = 16261.536304 eV Total energy + Delta-G solvation = -3058.373389 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.21465 -37.29293 -36.34045 -34.81886 -33.04341 -31.15921 -30.12618 -29.46961 -27.24655 -25.38546 -23.01639 -21.08111 -20.75758 -19.59150 -19.15747 -17.20486 -16.60940 -16.44063 -16.18163 -15.82284 -15.18620 -14.42671 -14.30834 -13.82029 -13.80557 -13.64510 -13.48757 -13.15034 -12.78708 -12.41640 -12.29728 -12.24999 -12.11086 -11.77959 -11.44642 -11.44228 -11.20654 -11.12291 -10.83733 -10.67461 -10.59678 -10.50066 -10.38913 -9.63397 -9.30438 -9.02035 -8.32500 -8.08057 -5.97739 -3.99400 -0.40395 2.37221 3.24629 3.33042 3.40340 3.45349 3.61230 3.95566 4.18767 4.32922 4.38365 4.47625 4.54103 4.59614 4.82453 5.09096 5.12737 5.17835 5.34198 5.38317 5.44556 5.65296 5.72014 5.78938 5.86589 6.00438 6.04474 6.23472 6.33346 6.72271 6.79414 7.12265 7.26466 7.40057 7.71400 7.85836 8.03083 8.46912 9.08134 9.64624 11.13841 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.053949 B = 0.002780 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.887614 B =10071.199843 C =10179.301211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.419 3.581 3 O -0.940 6.940 4 O -0.933 6.933 5 C -0.599 4.599 6 C -0.090 4.090 7 H 0.101 0.899 8 C -0.153 4.153 9 C 0.042 3.958 10 N -0.530 5.530 11 C 0.051 3.949 12 C -0.104 4.104 13 C 0.021 3.979 14 C -0.516 4.516 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.056 3.944 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.133 0.867 27 H 0.135 0.865 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.015 0.985 37 H 0.013 0.987 38 H 0.259 0.741 39 H 0.048 0.952 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.470 14.655 -9.936 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.601 3.399 3 O -0.937 6.937 4 O -0.930 6.930 5 C -0.729 4.729 6 C -0.110 4.110 7 H 0.119 0.881 8 C -0.191 4.191 9 C -0.085 4.085 10 N -0.254 5.254 11 C -0.076 4.076 12 C -0.142 4.142 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.073 4.073 23 H 0.146 0.854 24 H 0.147 0.853 25 H 0.147 0.853 26 H 0.151 0.849 27 H 0.153 0.847 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.544 15.143 -10.315 25.367 hybrid contribution -0.395 -1.320 0.495 1.464 sum -17.939 13.823 -9.820 24.685 Atomic orbital electron populations 1.30310 1.27317 1.11536 1.11706 1.07925 0.78074 0.75922 0.77966 1.93604 1.78913 1.34590 1.86590 1.93619 1.78642 1.66796 1.53964 1.30298 1.05560 1.14032 1.22988 1.22060 0.89530 1.01387 0.97987 0.88102 1.23153 0.98283 0.99093 0.98592 1.22840 0.97065 1.01144 0.87485 1.63658 1.25803 1.28774 1.07212 1.22485 0.99569 0.88308 0.97267 1.21634 0.92195 0.99762 1.00606 1.19081 0.96765 0.90892 0.94889 1.21301 0.93802 1.08462 1.31922 0.92596 1.25033 0.97506 0.96565 0.95480 1.69974 1.33581 1.15920 1.34249 0.86540 0.85381 0.78396 0.77720 1.19698 1.21037 1.21063 1.23025 0.90202 0.98357 0.95723 0.85420 0.85322 0.85345 0.84877 0.84710 0.89725 0.90478 0.90342 0.91725 0.95130 0.91329 0.92582 0.93456 0.96663 0.96888 0.93125 0.93329 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.12 10.62 101.05 1.07 -1.04 16 2 S 2.42 16.64 5.25 -107.50 -0.56 16.07 16 3 O -0.94 -10.12 18.10 -57.83 -1.05 -11.17 16 4 O -0.93 -9.87 16.44 -57.83 -0.95 -10.82 16 5 C -0.60 -3.54 5.31 37.16 0.20 -3.34 16 6 C -0.09 -0.88 3.06 -88.48 -0.27 -1.16 16 7 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 8 C -0.15 -1.75 5.13 -24.91 -0.13 -1.88 16 9 C 0.04 0.59 6.20 -2.84 -0.02 0.58 16 10 N -0.53 -8.01 5.16 -231.25 -1.19 -9.20 16 11 C 0.05 0.89 4.54 -3.83 -0.02 0.88 16 12 C -0.10 -2.20 5.18 -26.73 -0.14 -2.34 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.06 0.65 6.15 -2.30 -0.01 0.64 16 23 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 24 H 0.13 0.38 8.14 -51.92 -0.42 -0.05 16 25 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 26 H 0.13 0.55 8.11 -51.92 -0.42 0.13 16 27 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.08 0.95 7.60 -51.93 -0.39 0.55 16 29 H 0.08 0.83 8.02 -51.93 -0.42 0.42 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.96 6.91 -51.93 -0.36 0.60 16 32 H 0.03 0.53 7.96 -51.93 -0.41 0.12 16 33 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 0.99 7.14 -51.93 -0.37 0.62 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.05 0.54 7.71 -51.93 -0.40 0.14 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -36.50 333.82 -9.84 -46.34 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -6.96 Total: -5.69 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 0.13 Total: -20.97 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.46 Total: -35.75 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -2.00 Total: -21.99 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 16.64 SS G_CDS: -0.56 Total: 16.07 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.50 -9.84 -46.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343795770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.614 kcal (2) G-P(sol) polarization free energy of solvation -36.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds