Wall clock time and date at job start Mon Mar 30 2020 01:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42094 * 108.57846 * 2 1 4 4 O 1.42101 * 108.57328 * 228.97750 * 2 1 3 5 5 C 1.81399 * 101.92237 * 114.48990 * 2 1 3 6 6 C 1.52997 * 109.46899 * 179.97438 * 5 2 1 7 7 H 1.09003 * 110.87836 * 57.39423 * 6 5 2 8 8 C 1.55146 * 110.99432 * 293.54451 * 6 5 2 9 9 C 1.54313 * 103.01817 * 206.21940 * 8 6 5 10 10 N 1.47446 * 107.23765 * 22.28651 * 9 8 6 11 11 C 1.46894 * 110.99994 * 123.25808 * 10 9 8 12 12 C 1.52997 * 109.47515 * 69.87423 * 11 10 9 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99776 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00001 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00114 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46999 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46979 * 120.00420 * 18 16 14 21 21 H 1.48498 * 109.46942 * 240.00334 * 18 16 14 22 22 C 1.47841 * 108.56334 * 0.98850 * 10 9 8 23 23 H 1.09000 * 109.46554 * 305.50841 * 1 2 3 24 24 H 1.08998 * 109.46926 * 65.50594 * 1 2 3 25 25 H 1.08999 * 109.46815 * 185.51463 * 1 2 3 26 26 H 1.08999 * 109.47131 * 59.99778 * 5 2 1 27 27 H 1.08999 * 109.47012 * 299.99882 * 5 2 1 28 28 H 1.08996 * 110.69791 * 87.83586 * 8 6 5 29 29 H 1.09004 * 110.85322 * 324.67276 * 8 6 5 30 30 H 1.09005 * 109.88929 * 262.87767 * 9 8 6 31 31 H 1.09000 * 109.88875 * 141.69053 * 9 8 6 32 32 H 1.09002 * 109.47104 * 309.87155 * 11 10 9 33 33 H 1.08998 * 109.46828 * 189.87987 * 11 10 9 34 34 H 1.09002 * 109.47153 * 59.99762 * 12 11 10 35 35 H 1.09001 * 109.46832 * 299.99953 * 12 11 10 36 36 H 1.09001 * 109.47194 * 299.99650 * 13 12 11 37 37 H 1.08992 * 109.47399 * 59.99823 * 13 12 11 38 38 H 0.97000 * 120.00354 * 180.02562 * 17 16 14 39 39 H 1.08999 * 110.37888 * 94.73662 * 22 10 9 40 40 H 1.09006 * 110.37050 * 217.07941 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7055 -0.8196 1.7978 7 1 4.1631 0.1653 1.7046 8 6 4.3320 -1.8209 0.7917 9 6 5.6154 -2.2820 1.5138 10 7 5.4176 -2.0387 2.9545 11 6 5.5899 -3.2768 3.7260 12 6 7.0639 -3.6866 3.7105 13 6 7.2432 -4.9765 4.5135 14 6 8.6950 -5.3804 4.4977 15 1 9.4175 -4.7771 3.9681 16 6 9.1009 -6.5195 5.1600 17 7 8.2211 -7.2538 5.8053 18 14 10.9003 -7.0205 5.1398 19 1 11.6799 -6.0342 4.3495 20 1 11.4188 -7.0604 6.5308 21 1 11.0328 -8.3650 4.5234 22 6 4.0665 -1.4730 3.1552 23 1 -0.3632 0.5969 0.8366 24 1 -0.3633 0.4261 -0.9352 25 1 -0.3633 -1.0229 0.0988 26 1 1.7611 -1.7370 1.6664 27 1 1.7611 -0.1172 2.4042 28 1 4.5755 -1.3226 -0.1466 29 1 3.6640 -2.6643 0.6168 30 1 6.4696 -1.7080 1.1546 31 1 5.7792 -3.3449 1.3364 32 1 4.9879 -4.0690 3.2810 33 1 5.2695 -3.1114 4.7547 34 1 7.6660 -2.8944 4.1556 35 1 7.3842 -3.8519 2.6818 36 1 6.9228 -4.8115 5.5423 37 1 6.6412 -5.7684 4.0681 38 1 8.5067 -8.0549 6.2716 39 1 3.3561 -2.2635 3.3967 40 1 4.0831 -0.7221 3.9452 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343795770.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:38 Heat of formation + Delta-G solvation = -108.746506 kcal Electronic energy + Delta-G solvation = -19321.114818 eV Core-core repulsion = 16261.536304 eV Total energy + Delta-G solvation = -3059.578514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25954 -37.93302 -36.99139 -36.37250 -34.75029 -32.71939 -30.79772 -30.21682 -28.67643 -26.71717 -24.63799 -22.59572 -21.68697 -21.00725 -19.72869 -18.49425 -17.89048 -17.18524 -16.99841 -16.73509 -16.55702 -16.13733 -15.55945 -14.95821 -14.68233 -14.37603 -14.07353 -13.99965 -13.88218 -13.69178 -13.47962 -13.29355 -13.05789 -12.95901 -12.86690 -12.61380 -12.49034 -12.28032 -12.16204 -12.12368 -11.86564 -11.65232 -11.48670 -11.38349 -11.22120 -10.99431 -10.56319 -9.26131 -8.21195 -6.31887 -0.88105 1.39372 1.39510 1.53382 1.93836 2.40368 2.72357 3.02927 3.11870 3.16977 3.47646 3.61737 3.68901 4.09236 4.13764 4.19701 4.24581 4.29754 4.31753 4.45521 4.55087 4.65449 4.73468 4.77253 4.90060 4.96500 5.00153 5.01238 5.06272 5.09535 5.23674 5.26361 5.51797 5.73582 5.85301 6.06316 6.10389 6.28041 6.84763 7.37295 8.90946 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.053949 B = 0.002780 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.887614 B =10071.199843 C =10179.301211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.638 4.638 2 S 2.416 3.584 3 O -0.989 6.989 4 O -0.981 6.981 5 C -0.592 4.592 6 C -0.089 4.089 7 H 0.096 0.904 8 C -0.151 4.151 9 C 0.037 3.963 10 N -0.543 5.543 11 C 0.064 3.936 12 C -0.090 4.090 13 C 0.027 3.973 14 C -0.543 4.543 15 H 0.056 0.944 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.277 1.277 22 C 0.052 3.948 23 H 0.154 0.846 24 H 0.134 0.866 25 H 0.152 0.848 26 H 0.157 0.843 27 H 0.169 0.831 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.045 0.955 36 H -0.006 1.006 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.061 0.939 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.909 15.239 -9.823 26.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.791 4.791 2 S 2.604 3.396 3 O -0.986 6.986 4 O -0.978 6.978 5 C -0.722 4.722 6 C -0.109 4.109 7 H 0.115 0.885 8 C -0.189 4.189 9 C -0.090 4.090 10 N -0.267 5.267 11 C -0.064 4.064 12 C -0.128 4.128 13 C -0.011 4.011 14 C -0.581 4.581 15 H 0.075 0.925 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.076 4.076 23 H 0.173 0.827 24 H 0.153 0.847 25 H 0.171 0.829 26 H 0.176 0.824 27 H 0.187 0.813 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.012 0.988 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.952 15.751 -10.224 26.679 hybrid contribution -0.028 -1.501 0.483 1.577 sum -18.980 14.250 -9.741 25.656 Atomic orbital electron populations 1.30101 1.21755 1.13877 1.13349 1.07609 0.79998 0.74308 0.77662 1.93545 1.81123 1.36703 1.87234 1.93562 1.80835 1.67364 1.56013 1.30233 1.02720 1.16168 1.23052 1.22020 0.92424 1.00390 0.96071 0.88532 1.23128 0.97285 0.99862 0.98667 1.22857 0.98495 1.00265 0.87428 1.63573 1.28618 1.27124 1.07428 1.22189 0.96621 0.89600 0.97979 1.21385 0.95090 0.97029 0.99280 1.18967 0.95343 0.92599 0.94189 1.21718 0.95077 1.09024 1.32270 0.92548 1.25976 1.02561 0.96455 0.94836 1.70092 1.35962 1.16433 1.34854 0.85398 0.79304 0.78223 0.78124 1.18818 1.20166 1.20216 1.23152 0.88514 0.98872 0.97099 0.82735 0.84719 0.82936 0.82448 0.81289 0.89979 0.89740 0.90790 0.93166 0.95217 0.91089 0.93211 0.93665 0.98800 0.99079 0.92713 0.92110 0.88974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.59 10.62 113.37 1.20 -0.38 16 2 S 2.42 29.29 5.25 -56.49 -0.30 29.00 16 3 O -0.99 -20.82 18.10 -127.37 -2.30 -23.13 16 4 O -0.98 -20.32 16.44 -127.37 -2.09 -22.42 16 5 C -0.59 -5.11 5.31 71.98 0.38 -4.73 16 6 C -0.09 -1.61 3.06 -9.41 -0.03 -1.64 16 7 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 8 C -0.15 -3.38 5.13 31.78 0.16 -3.22 16 9 C 0.04 1.05 6.20 86.64 0.54 1.59 16 10 N -0.54 -16.12 5.16 -885.55 -4.57 -20.69 16 11 C 0.06 2.24 4.54 86.30 0.39 2.64 16 12 C -0.09 -3.89 5.18 30.59 0.16 -3.73 16 13 C 0.03 1.44 4.97 29.85 0.15 1.59 16 14 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 15 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 16 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 17 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 18 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 19 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 C 0.05 1.11 6.15 86.78 0.53 1.65 16 23 H 0.15 -0.34 8.14 -2.39 -0.02 -0.36 16 24 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 25 H 0.15 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.16 0.66 8.11 -2.39 -0.02 0.64 16 27 H 0.17 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.08 1.87 7.60 -2.39 -0.02 1.86 16 29 H 0.08 1.74 8.02 -2.39 -0.02 1.72 16 30 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.05 1.53 6.91 -2.39 -0.02 1.52 16 32 H 0.03 1.04 7.96 -2.39 -0.02 1.02 16 33 H 0.07 2.44 8.07 -2.39 -0.02 2.42 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.04 1.95 7.14 -2.39 -0.02 1.93 16 36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.06 1.18 7.71 -2.39 -0.02 1.16 16 40 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -80.99 333.82 -1.78 -82.77 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 0.99 Total: 1.94 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 4.19 Total: -37.47 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -4.28 Total: -77.86 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -4.40 Total: -45.54 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 29.29 SS G_CDS: -0.30 Total: 29.00 kcal Total: -80.99 -1.78 -82.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343795770.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.975 kcal (2) G-P(sol) polarization free energy of solvation -80.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds