Wall clock time and date at job start Mon Mar 30 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42097 * 108.58004 * 2 1 4 4 O 1.42096 * 108.57955 * 228.96977 * 2 1 3 5 5 C 1.81409 * 101.91940 * 114.48166 * 2 1 3 6 6 C 1.52995 * 109.46765 * 179.97438 * 5 2 1 7 7 H 1.09001 * 110.65083 * 303.30098 * 6 5 2 8 8 C 1.54597 * 110.72714 * 66.45762 * 6 5 2 9 9 C 1.53990 * 105.14058 * 140.30861 * 8 6 5 10 10 N 1.47900 * 107.06082 * 1.23015 * 9 8 6 11 11 C 1.46901 * 110.99743 * 214.15780 * 10 9 8 12 12 C 1.53002 * 109.47061 * 175.70764 * 11 10 9 13 13 C 1.52996 * 109.47292 * 174.85290 * 12 11 10 14 14 C 1.50703 * 109.47280 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99547 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00079 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99728 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47266 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47016 * 120.00172 * 18 16 14 21 21 H 1.48495 * 109.46994 * 239.99627 * 18 16 14 22 22 C 1.48532 * 105.81619 * 334.66535 * 10 9 8 23 23 H 1.09000 * 109.47335 * 305.52177 * 1 2 3 24 24 H 1.09008 * 109.46886 * 65.51721 * 1 2 3 25 25 H 1.08998 * 109.47583 * 185.51438 * 1 2 3 26 26 H 1.08997 * 109.46765 * 59.99825 * 5 2 1 27 27 H 1.09000 * 109.46866 * 300.00422 * 5 2 1 28 28 H 1.08998 * 110.30789 * 21.39341 * 8 6 5 29 29 H 1.08997 * 110.39181 * 259.27229 * 8 6 5 30 30 H 1.09000 * 109.91871 * 241.87283 * 9 8 6 31 31 H 1.09006 * 110.07755 * 120.67015 * 9 8 6 32 32 H 1.08995 * 109.47815 * 55.70586 * 11 10 9 33 33 H 1.09006 * 109.47009 * 295.70150 * 11 10 9 34 34 H 1.09002 * 109.46996 * 54.85338 * 12 11 10 35 35 H 1.08999 * 109.47208 * 294.85233 * 12 11 10 36 36 H 1.08998 * 109.47426 * 300.00316 * 13 12 11 37 37 H 1.09001 * 109.47255 * 59.99570 * 13 12 11 38 38 H 0.97003 * 120.00315 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.66372 * 157.64993 * 22 10 9 40 40 H 1.09004 * 110.66971 * 280.77256 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6154 6 6 3.7054 -0.8194 1.7980 7 1 4.1596 -1.3864 0.9855 8 6 4.3242 0.5942 1.8915 9 6 5.4102 0.4868 2.9780 10 7 5.4201 -0.9167 3.4443 11 6 5.7369 -0.9931 4.8767 12 6 5.6330 -2.4460 5.3452 13 6 6.0864 -2.5455 6.8030 14 6 5.9835 -3.9764 7.2646 15 1 5.6305 -4.7386 6.5858 16 6 6.3400 -4.3123 8.5534 17 7 6.7703 -3.3841 9.3798 18 14 6.2132 -6.0861 9.1253 19 1 5.7061 -6.9296 8.0133 20 1 7.5543 -6.5690 9.5418 21 1 5.2779 -6.1696 10.2756 22 6 4.0585 -1.4436 3.1715 23 1 -0.3634 0.5971 0.8364 24 1 -0.3633 0.4259 -0.9353 25 1 -0.3634 -1.0229 0.0987 26 1 1.7609 -1.7368 1.6667 27 1 1.7609 -0.1169 2.4043 28 1 3.5661 1.3204 2.1847 29 1 4.7697 0.8775 0.9379 30 1 5.1722 1.1522 3.8078 31 1 6.3834 0.7465 2.5613 32 1 5.0325 -0.3793 5.4380 33 1 6.7504 -0.6289 5.0447 34 1 6.2699 -3.0747 4.7229 35 1 4.5992 -2.7814 5.2625 36 1 7.1201 -2.2100 6.8858 37 1 5.4496 -1.9167 7.4253 38 1 7.0215 -3.6205 10.2864 39 1 4.0728 -2.5316 3.1074 40 1 3.3569 -1.1115 3.9368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343795771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:42 Heat of formation + Delta-G solvation = -81.244535 kcal Electronic energy + Delta-G solvation = -19395.051398 eV Core-core repulsion = 16336.665459 eV Total energy + Delta-G solvation = -3058.385939 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.18820 -37.26129 -36.31019 -34.82579 -33.08897 -31.35177 -30.07235 -29.23721 -27.15881 -25.65653 -22.87740 -21.09043 -20.68732 -19.70653 -19.12931 -17.02135 -16.60520 -16.42629 -16.17926 -15.81574 -15.08082 -14.64232 -14.42849 -13.90292 -13.72567 -13.63534 -13.44224 -12.89101 -12.72126 -12.48405 -12.31329 -12.25823 -12.12233 -11.74330 -11.43571 -11.40009 -11.22871 -11.14324 -10.85138 -10.75392 -10.52653 -10.47719 -10.36111 -9.68327 -9.34048 -9.04367 -8.34934 -8.19509 -5.99923 -4.01986 -0.36291 2.41027 3.28141 3.30786 3.38260 3.42586 3.65524 3.99476 4.25725 4.36766 4.42376 4.48519 4.55689 4.59847 4.88734 5.09354 5.17970 5.22573 5.35990 5.36655 5.47637 5.68327 5.71388 5.78126 5.86609 5.98593 6.05442 6.14376 6.29410 6.64568 6.77391 7.02564 7.20524 7.34924 7.68363 7.83147 8.00502 8.43736 9.05441 9.62065 11.11581 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.033766 B = 0.003075 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.048000 B = 9104.748016 C = 9606.268753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.420 3.580 3 O -0.936 6.936 4 O -0.939 6.939 5 C -0.601 4.601 6 C -0.084 4.084 7 H 0.100 0.900 8 C -0.142 4.142 9 C 0.035 3.965 10 N -0.518 5.518 11 C 0.047 3.953 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.051 3.949 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.136 0.864 27 H 0.133 0.867 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.016 0.984 37 H 0.013 0.987 38 H 0.259 0.741 39 H 0.088 0.912 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.151 8.830 -17.727 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.602 3.398 3 O -0.933 6.933 4 O -0.936 6.936 5 C -0.730 4.730 6 C -0.104 4.104 7 H 0.118 0.882 8 C -0.180 4.180 9 C -0.093 4.093 10 N -0.242 5.242 11 C -0.080 4.080 12 C -0.145 4.145 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.078 4.078 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.146 0.854 26 H 0.154 0.846 27 H 0.151 0.849 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.119 8.866 -18.478 23.810 hybrid contribution -1.343 -0.746 1.638 2.245 sum -13.462 8.120 -16.840 23.038 Atomic orbital electron populations 1.30311 1.27334 1.11555 1.11689 1.07897 0.78051 0.76008 0.77860 1.93605 1.78725 1.34426 1.86525 1.93606 1.78884 1.67019 1.54138 1.30345 1.05711 1.14158 1.22809 1.21846 0.89324 0.98210 1.01036 0.88204 1.22752 0.98910 0.95707 1.00600 1.22849 0.99222 0.90387 0.96830 1.64854 1.25165 1.15626 1.18577 1.22491 1.00700 0.99626 0.85208 1.21672 1.00422 0.92612 0.99785 1.19075 0.96517 0.96905 0.89102 1.21286 1.43418 0.94000 0.96920 0.92644 1.25035 0.95359 0.97267 0.96903 1.69976 1.44803 1.32627 1.06185 0.86540 0.77688 0.85167 0.78634 1.19728 1.20993 1.21080 1.23201 0.90155 1.00844 0.93600 0.85370 0.85371 0.85355 0.84566 0.84893 0.90308 0.90157 0.93629 0.90257 0.95213 0.90821 0.92430 0.93620 0.96523 0.96875 0.93086 0.89332 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -2.37 10.62 101.05 1.07 -1.29 16 2 S 2.42 17.26 5.25 -107.50 -0.56 16.70 16 3 O -0.94 -9.78 16.51 -57.83 -0.95 -10.73 16 4 O -0.94 -10.47 18.10 -57.83 -1.05 -11.51 16 5 C -0.60 -3.95 5.19 37.15 0.19 -3.76 16 6 C -0.08 -0.88 3.09 -88.76 -0.27 -1.15 16 7 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 8 C -0.14 -1.56 5.15 -25.38 -0.13 -1.69 16 9 C 0.04 0.45 6.70 -2.76 -0.02 0.43 16 10 N -0.52 -7.86 5.35 -230.45 -1.23 -9.09 16 11 C 0.05 0.83 4.84 -3.82 -0.02 0.81 16 12 C -0.11 -2.22 4.83 -26.73 -0.13 -2.35 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 22 C 0.05 0.66 4.81 -1.90 -0.01 0.65 16 23 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 24 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.13 0.62 8.08 -51.92 -0.42 0.20 16 28 H 0.08 0.78 7.39 -51.93 -0.38 0.40 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.51 7.97 -51.93 -0.41 0.10 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 0.91 7.18 -51.93 -0.37 0.54 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.09 1.18 7.77 -51.93 -0.40 0.78 16 40 H 0.05 0.63 7.92 -51.93 -0.41 0.21 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -36.15 333.70 -9.91 -46.06 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -6.99 Total: -5.29 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 0.14 Total: -21.50 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.50 Total: -35.44 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -2.00 Total: -22.24 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 17.26 SS G_CDS: -0.56 Total: 16.70 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.15 -9.91 -46.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343795771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.184 kcal (2) G-P(sol) polarization free energy of solvation -36.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds