Wall clock time and date at job start Mon Mar 30 2020 01:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42097 * 108.58004 * 2 1 4 4 O 1.42096 * 108.57955 * 228.96977 * 2 1 3 5 5 C 1.81409 * 101.91940 * 114.48166 * 2 1 3 6 6 C 1.52995 * 109.46765 * 179.97438 * 5 2 1 7 7 H 1.09001 * 110.65083 * 303.30098 * 6 5 2 8 8 C 1.54597 * 110.72714 * 66.45762 * 6 5 2 9 9 C 1.53990 * 105.14058 * 140.30861 * 8 6 5 10 10 N 1.47900 * 107.06082 * 1.23015 * 9 8 6 11 11 C 1.46901 * 110.99743 * 214.15780 * 10 9 8 12 12 C 1.53002 * 109.47061 * 175.70764 * 11 10 9 13 13 C 1.52996 * 109.47292 * 174.85290 * 12 11 10 14 14 C 1.50703 * 109.47280 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99547 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00079 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99728 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47266 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47016 * 120.00172 * 18 16 14 21 21 H 1.48495 * 109.46994 * 239.99627 * 18 16 14 22 22 C 1.48532 * 105.81619 * 334.66535 * 10 9 8 23 23 H 1.09000 * 109.47335 * 305.52177 * 1 2 3 24 24 H 1.09008 * 109.46886 * 65.51721 * 1 2 3 25 25 H 1.08998 * 109.47583 * 185.51438 * 1 2 3 26 26 H 1.08997 * 109.46765 * 59.99825 * 5 2 1 27 27 H 1.09000 * 109.46866 * 300.00422 * 5 2 1 28 28 H 1.08998 * 110.30789 * 21.39341 * 8 6 5 29 29 H 1.08997 * 110.39181 * 259.27229 * 8 6 5 30 30 H 1.09000 * 109.91871 * 241.87283 * 9 8 6 31 31 H 1.09006 * 110.07755 * 120.67015 * 9 8 6 32 32 H 1.08995 * 109.47815 * 55.70586 * 11 10 9 33 33 H 1.09006 * 109.47009 * 295.70150 * 11 10 9 34 34 H 1.09002 * 109.46996 * 54.85338 * 12 11 10 35 35 H 1.08999 * 109.47208 * 294.85233 * 12 11 10 36 36 H 1.08998 * 109.47426 * 300.00316 * 13 12 11 37 37 H 1.09001 * 109.47255 * 59.99570 * 13 12 11 38 38 H 0.97003 * 120.00315 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.66372 * 157.64993 * 22 10 9 40 40 H 1.09004 * 110.66971 * 280.77256 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6154 6 6 3.7054 -0.8194 1.7980 7 1 4.1596 -1.3864 0.9855 8 6 4.3242 0.5942 1.8915 9 6 5.4102 0.4868 2.9780 10 7 5.4201 -0.9167 3.4443 11 6 5.7369 -0.9931 4.8767 12 6 5.6330 -2.4460 5.3452 13 6 6.0864 -2.5455 6.8030 14 6 5.9835 -3.9764 7.2646 15 1 5.6305 -4.7386 6.5858 16 6 6.3400 -4.3123 8.5534 17 7 6.7703 -3.3841 9.3798 18 14 6.2132 -6.0861 9.1253 19 1 5.7061 -6.9296 8.0133 20 1 7.5543 -6.5690 9.5418 21 1 5.2779 -6.1696 10.2756 22 6 4.0585 -1.4436 3.1715 23 1 -0.3634 0.5971 0.8364 24 1 -0.3633 0.4259 -0.9353 25 1 -0.3634 -1.0229 0.0987 26 1 1.7609 -1.7368 1.6667 27 1 1.7609 -0.1169 2.4043 28 1 3.5661 1.3204 2.1847 29 1 4.7697 0.8775 0.9379 30 1 5.1722 1.1522 3.8078 31 1 6.3834 0.7465 2.5613 32 1 5.0325 -0.3793 5.4380 33 1 6.7504 -0.6289 5.0447 34 1 6.2699 -3.0747 4.7229 35 1 4.5992 -2.7814 5.2625 36 1 7.1201 -2.2100 6.8858 37 1 5.4496 -1.9167 7.4253 38 1 7.0215 -3.6205 10.2864 39 1 4.0728 -2.5316 3.1074 40 1 3.3569 -1.1115 3.9368 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343795771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:42 Heat of formation + Delta-G solvation = -108.708076 kcal Electronic energy + Delta-G solvation = -19396.242307 eV Core-core repulsion = 16336.665459 eV Total energy + Delta-G solvation = -3059.576848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 275.134 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.24075 -37.92496 -36.98570 -36.37064 -34.76577 -32.86622 -30.68957 -30.19042 -28.42159 -27.09463 -24.51596 -22.45442 -21.74189 -21.08590 -19.71043 -18.49843 -17.69426 -17.19247 -17.01258 -16.74333 -16.49367 -16.08206 -15.91224 -15.03240 -14.50555 -14.30628 -14.12714 -14.00587 -13.88295 -13.71292 -13.34238 -13.25679 -13.02430 -12.94861 -12.94769 -12.63514 -12.57263 -12.30337 -12.13827 -12.03421 -11.87270 -11.59658 -11.49661 -11.35237 -11.12748 -11.07506 -10.56212 -9.37561 -8.20560 -6.31628 -0.87129 1.39942 1.40699 1.54077 1.94382 2.40815 2.72849 3.05013 3.12702 3.17967 3.52774 3.57264 3.74082 4.09748 4.14505 4.19731 4.23140 4.30271 4.33441 4.43495 4.56748 4.67737 4.70169 4.77658 4.90169 4.94239 5.00198 5.01804 5.05552 5.14349 5.20074 5.27234 5.51471 5.72561 5.84979 5.97716 6.05946 6.26602 6.85428 7.37771 8.91645 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.033766 B = 0.003075 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.048000 B = 9104.748016 C = 9606.268753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.639 4.639 2 S 2.422 3.578 3 O -0.977 6.977 4 O -0.989 6.989 5 C -0.597 4.597 6 C -0.085 4.085 7 H 0.092 0.908 8 C -0.140 4.140 9 C 0.032 3.968 10 N -0.532 5.532 11 C 0.059 3.941 12 C -0.090 4.090 13 C 0.026 3.974 14 C -0.541 4.541 15 H 0.060 0.940 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.966 3.034 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.277 1.277 22 C 0.045 3.955 23 H 0.153 0.847 24 H 0.136 0.864 25 H 0.152 0.848 26 H 0.163 0.837 27 H 0.158 0.842 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.054 0.946 36 H -0.010 1.010 37 H -0.008 1.008 38 H 0.264 0.736 39 H 0.083 0.917 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.470 8.115 -18.163 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.792 4.792 2 S 2.609 3.391 3 O -0.974 6.974 4 O -0.986 6.986 5 C -0.727 4.727 6 C -0.105 4.105 7 H 0.110 0.890 8 C -0.178 4.178 9 C -0.096 4.096 10 N -0.257 5.257 11 C -0.069 4.069 12 C -0.128 4.128 13 C -0.012 4.012 14 C -0.579 4.579 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.202 1.202 22 C -0.083 4.083 23 H 0.171 0.829 24 H 0.154 0.846 25 H 0.170 0.830 26 H 0.181 0.819 27 H 0.176 0.824 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.008 0.992 37 H 0.010 0.990 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.404 8.159 -18.943 25.157 hybrid contribution -0.662 -0.492 1.782 1.964 sum -15.066 7.668 -17.161 24.089 Atomic orbital electron populations 1.30112 1.21900 1.13848 1.13338 1.07479 0.79886 0.74448 0.77238 1.93552 1.80802 1.36057 1.86967 1.93546 1.81112 1.67790 1.56159 1.30311 1.02967 1.16371 1.23005 1.21794 0.92223 0.97253 0.99197 0.88963 1.22768 0.98710 0.96562 0.99806 1.22916 1.00162 0.88997 0.97507 1.64783 1.27060 1.17421 1.16398 1.22207 1.00415 0.97185 0.87089 1.21408 1.00369 0.94879 0.96182 1.18973 0.94555 0.95541 0.92134 1.21716 1.43576 0.95161 0.97492 0.92216 1.26001 0.94735 1.02183 0.97031 1.70105 1.45564 1.35108 1.06690 0.85380 0.77906 0.79262 0.78391 1.18531 1.20467 1.20218 1.23283 0.89111 1.00664 0.95277 0.82869 0.84585 0.83009 0.81942 0.82374 0.88940 0.90284 0.93294 0.90189 0.94995 0.91760 0.93123 0.92736 0.99200 0.98994 0.92762 0.89910 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -2.08 10.62 113.37 1.20 -0.87 16 2 S 2.42 30.43 5.25 -56.49 -0.30 30.13 16 3 O -0.98 -19.49 16.51 -127.37 -2.10 -21.59 16 4 O -0.99 -21.59 18.10 -127.37 -2.30 -23.89 16 5 C -0.60 -6.20 5.19 71.98 0.37 -5.83 16 6 C -0.08 -1.66 3.09 -9.59 -0.03 -1.69 16 7 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 8 C -0.14 -2.94 5.15 31.47 0.16 -2.78 16 9 C 0.03 0.80 6.70 86.45 0.58 1.38 16 10 N -0.53 -15.94 5.35 -883.01 -4.73 -20.67 16 11 C 0.06 2.09 4.84 86.30 0.42 2.50 16 12 C -0.09 -3.79 4.83 30.59 0.15 -3.64 16 13 C 0.03 1.37 4.97 29.85 0.15 1.52 16 14 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 16 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 17 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 18 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 22 C 0.05 1.12 4.81 86.65 0.42 1.54 16 23 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.15 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H 0.16 0.84 8.14 -2.39 -0.02 0.83 16 27 H 0.16 0.87 8.08 -2.39 -0.02 0.85 16 28 H 0.09 1.67 7.39 -2.39 -0.02 1.65 16 29 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.05 1.19 7.67 -2.39 -0.02 1.17 16 31 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.03 1.10 7.97 -2.39 -0.02 1.08 16 33 H 0.06 2.35 8.14 -2.38 -0.02 2.34 16 34 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 2.16 7.18 -2.39 -0.02 2.15 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.08 2.12 7.77 -2.39 -0.02 2.10 16 40 H 0.06 1.31 7.92 -2.39 -0.02 1.29 16 Total: -1.00 -79.50 333.70 -2.02 -81.52 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 0.98 Total: 3.51 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 4.11 Total: -38.45 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -4.44 Total: -77.63 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -4.41 Total: -45.49 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 30.43 SS G_CDS: -0.30 Total: 30.13 kcal Total: -79.50 -2.02 -81.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343795771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.191 kcal (2) G-P(sol) polarization free energy of solvation -79.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds