Wall clock time and date at job start Mon Mar 30 2020 02:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00033 * 2 1 4 4 H 1.48497 * 109.47286 * 270.00208 * 3 2 1 5 5 H 1.48499 * 109.46956 * 30.00167 * 3 2 1 6 6 H 1.48502 * 109.46830 * 150.00229 * 3 2 1 7 7 C 1.37874 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99994 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00217 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47140 * 179.97438 * 9 7 2 11 11 C 1.46508 * 119.99850 * 262.69821 * 10 9 7 12 12 C 1.52999 * 109.46966 * 265.09835 * 11 10 9 13 13 C 1.52996 * 117.49873 * 243.74583 * 12 11 10 14 14 C 1.53001 * 117.49678 * 175.08855 * 12 11 10 15 15 C 1.34776 * 119.99930 * 82.69950 * 10 9 7 16 16 O 1.21517 * 119.99460 * 182.95237 * 15 10 9 17 17 C 1.48186 * 119.99858 * 2.95741 * 15 10 9 18 18 C 1.39029 * 119.68365 * 173.14544 * 17 15 10 19 19 C 1.39452 * 118.95320 * 179.69828 * 18 17 15 20 20 N 1.39196 * 120.83508 * 180.25236 * 19 18 17 21 21 C 1.39415 * 118.33775 * 0.28214 * 19 18 17 22 22 C 1.38236 * 119.26382 * 359.97438 * 21 19 18 23 23 N 1.31648 * 120.99022 * 0.02562 * 22 21 19 24 24 H 0.96999 * 119.99816 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46445 * 60.00060 * 9 7 2 26 26 H 1.08991 * 109.47059 * 300.00072 * 9 7 2 27 27 H 1.08999 * 109.46802 * 25.10041 * 11 10 9 28 28 H 1.08992 * 109.46823 * 145.10056 * 11 10 9 29 29 H 1.09000 * 115.55250 * 29.42327 * 12 11 10 30 30 H 1.09000 * 117.50222 * 0.02562 * 13 12 11 31 31 H 1.09005 * 117.49727 * 145.01863 * 13 12 11 32 32 H 1.09002 * 117.49450 * 214.98423 * 14 12 11 33 33 H 1.08997 * 117.49999 * 0.02562 * 14 12 11 34 34 H 1.08001 * 120.52678 * 359.97438 * 18 17 15 35 35 H 0.97007 * 119.99837 * 0.02562 * 20 19 18 36 36 H 0.96994 * 120.00318 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.37205 * 180.02562 * 21 19 18 38 38 H 1.07993 * 119.50291 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 4.3966 -3.2119 1.2575 12 6 5.9068 -3.0616 1.4512 13 6 6.7469 -4.3401 1.4727 14 6 6.5034 -3.5621 2.7682 15 6 4.0842 -3.2603 -1.1586 16 8 4.4381 -4.4228 -1.1522 17 6 3.7455 -2.5958 -2.4391 18 6 3.9702 -3.2597 -3.6398 19 6 3.6400 -2.6226 -4.8355 20 7 3.8436 -3.2530 -6.0597 21 6 3.1014 -1.3381 -4.7742 22 6 2.9130 -0.7425 -3.5410 23 7 3.2348 -1.3697 -2.4291 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8746 -0.6801 -0.8910 27 1 3.8746 -2.7342 2.0866 28 1 4.1378 -4.2702 1.2267 29 1 6.3524 -2.1740 1.0020 30 1 6.2238 -5.2883 1.3484 31 1 7.7454 -4.2936 1.0378 32 1 7.3416 -3.0039 3.1852 33 1 5.8200 -3.9987 3.4965 34 1 4.3898 -4.2549 -3.6463 35 1 4.2192 -4.1469 -6.0884 36 1 3.6098 -2.7985 -6.8841 37 1 2.8335 -0.8145 -5.6800 38 1 2.4965 0.2525 -3.4890 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345895779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:36 Heat of formation + Delta-G solvation = 51.279226 kcal Electronic energy + Delta-G solvation = -21496.217420 eV Core-core repulsion = 18340.426942 eV Total energy + Delta-G solvation = -3155.790478 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.11094 -38.57909 -36.85087 -35.30484 -34.48623 -32.20403 -30.88964 -29.49625 -28.13643 -26.56748 -23.58627 -22.69573 -22.25929 -21.99085 -20.56210 -19.05022 -17.31282 -16.88103 -16.75884 -16.05249 -15.58747 -15.12597 -14.74212 -14.61279 -14.13314 -13.89599 -13.72266 -13.51309 -13.11237 -12.87448 -12.40123 -12.01379 -11.69448 -11.47549 -11.32224 -11.27203 -11.08119 -10.72168 -10.57224 -10.23886 -10.02461 -9.64456 -9.48669 -9.28647 -8.71145 -8.51666 -8.17056 -7.81308 -7.57169 -5.94637 -3.87105 1.27584 1.94265 3.33788 3.41065 3.43876 3.48636 3.65654 3.92997 4.15135 4.50965 4.53607 4.89563 5.06901 5.16099 5.22602 5.29965 5.33790 5.41258 5.63208 5.72020 5.78569 5.83576 6.08195 6.12539 6.14041 6.18286 6.27496 6.30694 6.35680 6.55882 6.71451 6.90432 7.27441 7.45244 7.60297 7.71053 7.78688 8.25135 8.53111 8.67602 8.99274 9.09850 9.67711 11.19412 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.010913 B = 0.009301 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.108037 B = 3009.840706 C = 5055.943948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.268 1.268 7 C -0.491 4.491 8 H 0.068 0.932 9 C 0.196 3.804 10 N -0.568 5.568 11 C 0.148 3.852 12 C -0.162 4.162 13 C -0.172 4.172 14 C -0.180 4.180 15 C 0.570 3.430 16 O -0.564 6.564 17 C 0.126 3.874 18 C -0.196 4.196 19 C 0.230 3.770 20 N -0.871 5.871 21 C -0.238 4.238 22 C 0.130 3.870 23 N -0.430 5.430 24 H 0.260 0.740 25 H 0.019 0.981 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.399 0.601 36 H 0.398 0.602 37 H 0.127 0.873 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.562 -3.370 -6.867 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.126 4.126 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.530 4.530 8 H 0.086 0.914 9 C 0.076 3.924 10 N -0.295 5.295 11 C 0.024 3.976 12 C -0.181 4.181 13 C -0.209 4.209 14 C -0.218 4.218 15 C 0.357 3.643 16 O -0.444 6.444 17 C -0.013 4.013 18 C -0.222 4.222 19 C 0.118 3.882 20 N -0.411 5.411 21 C -0.263 4.263 22 C -0.028 4.028 23 N -0.143 5.143 24 H 0.070 0.930 25 H 0.037 0.963 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.154 0.846 35 H 0.227 0.773 36 H 0.226 0.774 37 H 0.144 0.856 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.450 -3.406 -5.963 12.504 hybrid contribution 0.296 0.511 -1.262 1.393 sum 10.746 -2.895 -7.225 13.269 Atomic orbital electron populations 1.69913 1.06172 1.26466 1.52059 1.24697 0.94424 0.98419 0.95021 0.86924 0.80248 0.84214 0.78540 1.20059 1.21850 1.19252 1.21143 0.88902 0.94304 1.48680 0.91390 1.20534 0.96170 0.77248 0.98470 1.47857 1.60552 1.16170 1.04938 1.20949 0.91053 0.98830 0.86745 1.22790 0.96042 0.98433 1.00857 1.22957 1.00892 0.96375 1.00705 1.22928 1.03186 1.04521 0.91170 1.17871 0.77679 0.85266 0.83463 1.90660 1.50269 1.16368 1.87098 1.20920 0.95968 0.91472 0.92904 1.21410 1.07909 1.02150 0.90771 1.17806 0.92392 0.91641 0.86328 1.42252 1.73607 1.20486 1.04779 1.21713 1.08900 0.95573 1.00133 1.22734 0.93573 0.99600 0.86916 1.68630 1.09622 1.07523 1.28516 0.92982 0.96308 0.90546 0.89630 0.90680 0.87986 0.88617 0.89551 0.89192 0.88809 0.84610 0.77281 0.77363 0.85550 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.20 13.96 55.43 0.77 -26.42 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 20.83 27.47 -169.99 -4.67 16.16 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 7 C -0.49 -13.48 8.49 -34.44 -0.29 -13.78 16 8 H 0.07 2.12 8.06 -52.49 -0.42 1.70 16 9 C 0.20 4.63 3.81 -5.19 -0.02 4.61 16 10 N -0.57 -12.38 2.49 -176.04 -0.44 -12.82 16 11 C 0.15 2.77 5.63 -4.04 -0.02 2.75 16 12 C -0.16 -2.60 5.98 -90.62 -0.54 -3.14 16 13 C -0.17 -2.46 10.18 -26.70 -0.27 -2.73 16 14 C -0.18 -2.35 10.25 -26.69 -0.27 -2.62 16 15 C 0.57 12.63 7.55 -12.17 -0.09 12.54 16 16 O -0.56 -12.84 15.98 5.35 0.09 -12.76 16 17 C 0.13 2.61 6.62 -83.06 -0.55 2.06 16 18 C -0.20 -3.42 9.52 -38.84 -0.37 -3.79 16 19 C 0.23 3.36 6.81 -83.63 -0.57 2.79 16 20 N -0.87 -8.74 9.08 32.52 0.30 -8.44 16 21 C -0.24 -3.53 10.00 -39.14 -0.39 -3.92 16 22 C 0.13 2.36 11.17 -17.63 -0.20 2.17 16 23 N -0.43 -9.16 4.97 -9.89 -0.05 -9.21 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.02 0.44 7.07 -51.92 -0.37 0.08 16 26 H 0.08 1.81 4.69 -52.17 -0.24 1.56 16 27 H 0.09 1.57 8.03 -51.93 -0.42 1.16 16 28 H 0.07 1.43 7.27 -51.93 -0.38 1.05 16 29 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 30 H 0.10 1.41 8.03 -51.93 -0.42 0.99 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.14 2.24 7.65 -52.49 -0.40 1.84 16 35 H 0.40 3.35 8.86 -40.82 -0.36 2.99 16 36 H 0.40 3.03 8.86 -40.82 -0.36 2.67 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.15 2.61 8.06 -52.49 -0.42 2.18 16 LS Contribution 321.69 15.07 4.85 4.85 Total: -1.00 -32.48 321.69 -7.92 -40.39 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.07 Total: 9.33 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -3.69 Total: -1.07 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.58 Total: -56.90 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.16 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.48 -7.92 -40.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345895779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.672 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds