Wall clock time and date at job start Mon Mar 30 2020 02:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00033 * 2 1 4 4 H 1.48497 * 109.47286 * 270.00208 * 3 2 1 5 5 H 1.48499 * 109.46956 * 30.00167 * 3 2 1 6 6 H 1.48502 * 109.46830 * 150.00229 * 3 2 1 7 7 C 1.37874 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99994 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00217 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47140 * 179.97438 * 9 7 2 11 11 C 1.46508 * 119.99850 * 262.69821 * 10 9 7 12 12 C 1.52999 * 109.46966 * 265.09835 * 11 10 9 13 13 C 1.52996 * 117.49873 * 243.74583 * 12 11 10 14 14 C 1.53001 * 117.49678 * 175.08855 * 12 11 10 15 15 C 1.34776 * 119.99930 * 82.69950 * 10 9 7 16 16 O 1.21517 * 119.99460 * 182.95237 * 15 10 9 17 17 C 1.48186 * 119.99858 * 2.95741 * 15 10 9 18 18 C 1.39029 * 119.68365 * 173.14544 * 17 15 10 19 19 C 1.39452 * 118.95320 * 179.69828 * 18 17 15 20 20 N 1.39196 * 120.83508 * 180.25236 * 19 18 17 21 21 C 1.39415 * 118.33775 * 0.28214 * 19 18 17 22 22 C 1.38236 * 119.26382 * 359.97438 * 21 19 18 23 23 N 1.31648 * 120.99022 * 0.02562 * 22 21 19 24 24 H 0.96999 * 119.99816 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.46445 * 60.00060 * 9 7 2 26 26 H 1.08991 * 109.47059 * 300.00072 * 9 7 2 27 27 H 1.08999 * 109.46802 * 25.10041 * 11 10 9 28 28 H 1.08992 * 109.46823 * 145.10056 * 11 10 9 29 29 H 1.09000 * 115.55250 * 29.42327 * 12 11 10 30 30 H 1.09000 * 117.50222 * 0.02562 * 13 12 11 31 31 H 1.09005 * 117.49727 * 145.01863 * 13 12 11 32 32 H 1.09002 * 117.49450 * 214.98423 * 14 12 11 33 33 H 1.08997 * 117.49999 * 0.02562 * 14 12 11 34 34 H 1.08001 * 120.52678 * 359.97438 * 18 17 15 35 35 H 0.97007 * 119.99837 * 0.02562 * 20 19 18 36 36 H 0.96994 * 120.00318 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.37205 * 180.02562 * 21 19 18 38 38 H 1.07993 * 119.50291 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 4.3966 -3.2119 1.2575 12 6 5.9068 -3.0616 1.4512 13 6 6.7469 -4.3401 1.4727 14 6 6.5034 -3.5621 2.7682 15 6 4.0842 -3.2603 -1.1586 16 8 4.4381 -4.4228 -1.1522 17 6 3.7455 -2.5958 -2.4391 18 6 3.9702 -3.2597 -3.6398 19 6 3.6400 -2.6226 -4.8355 20 7 3.8436 -3.2530 -6.0597 21 6 3.1014 -1.3381 -4.7742 22 6 2.9130 -0.7425 -3.5410 23 7 3.2348 -1.3697 -2.4291 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6804 0.8889 26 1 3.8746 -0.6801 -0.8910 27 1 3.8746 -2.7342 2.0866 28 1 4.1378 -4.2702 1.2267 29 1 6.3524 -2.1740 1.0020 30 1 6.2238 -5.2883 1.3484 31 1 7.7454 -4.2936 1.0378 32 1 7.3416 -3.0039 3.1852 33 1 5.8200 -3.9987 3.4965 34 1 4.3898 -4.2549 -3.6463 35 1 4.2192 -4.1469 -6.0884 36 1 3.6098 -2.7985 -6.8841 37 1 2.8335 -0.8145 -5.6800 38 1 2.4965 0.2525 -3.4890 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345895779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:35 Heat of formation + Delta-G solvation = 29.616049 kcal Electronic energy + Delta-G solvation = -21497.156806 eV Core-core repulsion = 18340.426942 eV Total energy + Delta-G solvation = -3156.729864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.58049 -40.05193 -38.17219 -36.73909 -35.93523 -34.28912 -32.26301 -30.75085 -29.95929 -28.15540 -25.11827 -24.20009 -23.84422 -23.16420 -21.87966 -20.54041 -18.93811 -18.55617 -18.27099 -17.42675 -16.97451 -16.54754 -16.33332 -15.89737 -15.79698 -15.36010 -15.09902 -14.87567 -14.68723 -14.35890 -14.24880 -13.72798 -13.32479 -12.92534 -12.63667 -12.52859 -12.50184 -12.32350 -12.24479 -11.96109 -11.62547 -11.30307 -11.10811 -10.80366 -10.60800 -10.10491 -9.71626 -9.32744 -8.89516 -8.11273 -6.09047 -0.12537 0.64606 1.46224 1.47771 1.57506 1.90926 2.19152 2.49326 2.86320 2.96142 3.08361 3.28908 3.42718 3.83483 3.85977 4.01561 4.08656 4.13877 4.33147 4.37041 4.48671 4.67142 4.77378 4.82049 4.82478 4.87601 4.97006 5.02573 5.03846 5.24915 5.28882 5.36500 5.66887 5.67508 5.92800 6.32657 6.41452 6.62930 6.85157 6.94312 7.09790 7.39044 7.51205 9.06691 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.010913 B = 0.009301 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.108037 B = 3009.840706 C = 5055.943948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.023 3.977 3 Si 0.937 3.063 4 H -0.254 1.254 5 H -0.294 1.294 6 H -0.251 1.251 7 C -0.484 4.484 8 H 0.012 0.988 9 C 0.210 3.790 10 N -0.575 5.575 11 C 0.145 3.855 12 C -0.183 4.183 13 C -0.171 4.171 14 C -0.153 4.153 15 C 0.561 3.439 16 O -0.581 6.581 17 C 0.093 3.907 18 C -0.200 4.200 19 C 0.243 3.757 20 N -0.846 5.846 21 C -0.221 4.221 22 C 0.109 3.891 23 N -0.472 5.472 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.140 0.860 35 H 0.410 0.590 36 H 0.415 0.585 37 H 0.168 0.832 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.605 -2.476 -8.525 15.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.178 1.178 5 H -0.221 1.221 6 H -0.175 1.175 7 C -0.523 4.523 8 H 0.030 0.970 9 C 0.089 3.911 10 N -0.303 5.303 11 C 0.022 3.978 12 C -0.203 4.203 13 C -0.208 4.208 14 C -0.190 4.190 15 C 0.349 3.651 16 O -0.463 6.463 17 C -0.044 4.044 18 C -0.227 4.227 19 C 0.128 3.872 20 N -0.388 5.388 21 C -0.247 4.247 22 C -0.048 4.048 23 N -0.186 5.186 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.158 0.842 35 H 0.240 0.760 36 H 0.247 0.753 37 H 0.185 0.815 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 12.522 -2.546 -7.658 14.898 hybrid contribution -0.396 0.084 -0.880 0.969 sum 12.126 -2.462 -8.539 15.034 Atomic orbital electron populations 1.70079 1.08268 1.27553 1.54011 1.25487 0.95065 1.02307 0.94430 0.85880 0.79259 0.78908 0.79808 1.17838 1.22063 1.17458 1.21140 0.90794 0.92148 1.48222 0.96959 1.20286 0.93403 0.78577 0.98875 1.47916 1.60628 1.15726 1.06014 1.21048 0.93356 0.97842 0.85543 1.22603 0.94025 0.99382 1.04254 1.22992 1.00902 0.95061 1.01825 1.23050 1.03095 1.02770 0.90096 1.18301 0.77261 0.85272 0.84271 1.90616 1.51226 1.16881 1.87536 1.20823 0.98257 0.92221 0.93123 1.21472 1.07944 1.02319 0.90941 1.17796 0.90964 0.91503 0.86923 1.42204 1.71937 1.20809 1.03805 1.21981 1.06946 0.95389 1.00340 1.22953 0.94222 1.00065 0.87606 1.68343 1.11341 1.08246 1.30663 0.92939 0.95842 0.89646 0.90017 0.91730 0.88507 0.89548 0.88175 0.86847 0.87923 0.84187 0.75951 0.75320 0.81480 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.38 13.96 21.45 0.30 -59.08 16 2 C 0.02 1.32 5.47 84.65 0.46 1.78 16 3 Si 0.94 42.84 27.47 68.60 1.88 44.72 16 4 H -0.25 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.25 -10.69 6.54 99.48 0.65 -10.04 16 7 C -0.48 -27.68 8.49 25.60 0.22 -27.46 16 8 H 0.01 0.81 8.06 -2.91 -0.02 0.79 16 9 C 0.21 10.10 3.81 85.64 0.33 10.43 16 10 N -0.58 -26.03 2.49 -829.16 -2.06 -28.10 16 11 C 0.14 5.62 5.63 86.38 0.49 6.11 16 12 C -0.18 -5.83 5.98 -10.79 -0.06 -5.90 16 13 C -0.17 -4.70 10.18 30.62 0.31 -4.39 16 14 C -0.15 -3.67 10.25 30.62 0.31 -3.36 16 15 C 0.56 25.76 7.55 86.89 0.66 26.42 16 16 O -0.58 -27.36 15.98 -3.77 -0.06 -27.42 16 17 C 0.09 3.93 6.62 41.83 0.28 4.21 16 18 C -0.20 -6.82 9.52 22.75 0.22 -6.61 16 19 C 0.24 6.44 6.81 38.55 0.26 6.70 16 20 N -0.85 -13.67 9.08 -51.02 -0.46 -14.14 16 21 C -0.22 -5.92 10.00 22.55 0.23 -5.69 16 22 C 0.11 3.86 11.17 84.72 0.95 4.81 16 23 N -0.47 -20.30 4.97 -185.22 -0.92 -21.22 16 24 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 25 H 0.02 1.10 7.07 -2.38 -0.02 1.09 16 26 H 0.09 4.06 4.69 -2.85 -0.01 4.05 16 27 H 0.08 3.13 8.03 -2.39 -0.02 3.11 16 28 H 0.06 2.58 7.27 -2.39 -0.02 2.57 16 29 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 30 H 0.09 2.53 8.03 -2.39 -0.02 2.51 16 31 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 32 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.14 4.54 7.65 -2.91 -0.02 4.51 16 35 H 0.41 5.39 8.86 -92.70 -0.82 4.57 16 36 H 0.42 4.34 8.86 -92.71 -0.82 3.52 16 37 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 38 H 0.16 5.20 8.06 -2.91 -0.02 5.18 16 Total: -1.00 -74.21 321.69 2.71 -71.50 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.60 Total: 26.67 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 4.64 Total: 7.05 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -3.15 Total: -122.53 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.06 Total: -27.42 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.88 Total: 44.72 kcal Total: -74.21 2.71 -71.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345895779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.116 kcal (2) G-P(sol) polarization free energy of solvation -74.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds