Wall clock time and date at job start Mon Mar 30 2020 02:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31330 * 1 3 3 Si 1.86807 * 119.99816 * 2 1 4 4 H 1.48501 * 109.46861 * 275.39010 * 3 2 1 5 5 H 1.48497 * 109.47168 * 35.38763 * 3 2 1 6 6 H 1.48494 * 109.47235 * 155.39123 * 3 2 1 7 7 C 1.39100 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00022 * 353.55596 * 7 2 1 9 9 N 1.36785 * 120.00500 * 173.55853 * 7 2 1 10 10 C 1.34780 * 119.99927 * 294.72741 * 9 7 2 11 11 O 1.21563 * 120.00112 * 183.55444 * 10 9 7 12 12 C 1.48020 * 119.99910 * 3.54964 * 10 9 7 13 13 C 1.39139 * 119.69935 * 172.95819 * 12 10 9 14 14 C 1.39406 * 118.95219 * 179.77710 * 13 12 10 15 15 N 1.39197 * 120.82884 * 180.24405 * 14 13 12 16 16 C 1.39453 * 118.34051 * 0.48960 * 14 13 12 17 17 C 1.38220 * 119.28495 * 359.75096 * 16 14 13 18 18 N 1.31653 * 121.00031 * 0.02562 * 17 16 14 19 19 C 1.46500 * 120.00538 * 114.72118 * 9 7 2 20 20 C 1.54968 * 110.92355 * 303.81142 * 19 9 7 21 21 C 1.54267 * 104.16053 * 156.29213 * 20 19 9 22 22 C 1.53874 * 106.64091 * 336.44379 * 21 20 19 23 23 C 1.54274 * 106.59780 * 359.97438 * 22 21 20 24 24 H 0.96993 * 119.99975 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.52025 * 0.02562 * 13 12 10 26 26 H 0.97001 * 120.00212 * 180.25190 * 15 14 13 27 27 H 0.97004 * 119.99823 * 0.25796 * 15 14 13 28 28 H 1.08000 * 120.35423 * 179.77668 * 16 14 13 29 29 H 1.07997 * 119.49848 * 180.02562 * 17 16 14 30 30 H 1.08998 * 110.67395 * 180.50216 * 19 9 7 31 31 H 1.09001 * 110.47718 * 37.63603 * 20 19 9 32 32 H 1.09000 * 110.52772 * 274.97009 * 20 19 9 33 33 H 1.09002 * 110.03366 * 217.13946 * 21 20 19 34 34 H 1.08994 * 110.03309 * 95.75303 * 21 20 19 35 35 H 1.09005 * 110.03274 * 119.25942 * 22 21 20 36 36 H 1.09004 * 110.03571 * 240.64285 * 22 21 20 37 37 H 1.09002 * 110.48388 * 142.28697 * 23 22 21 38 38 H 1.09001 * 110.48687 * 264.79750 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2473 1.6178 0.0000 4 1 2.3808 2.1122 -1.3939 5 1 1.5063 2.6172 0.8108 6 1 3.5971 1.4101 0.5830 7 6 2.0089 -1.2046 0.0005 8 1 1.4741 -2.1369 0.1059 9 7 3.3703 -1.2084 -0.1324 10 6 3.9366 -0.7828 -1.2789 11 8 5.1422 -0.8465 -1.4216 12 6 3.0907 -0.2378 -2.3645 13 6 3.6884 0.3344 -3.4831 14 6 2.8769 0.8386 -4.4982 15 7 3.4335 1.4146 -5.6367 16 6 1.4936 0.7561 -4.3424 17 6 0.9753 0.1777 -3.1991 18 7 1.7671 -0.2941 -2.2590 19 6 4.2128 -1.6750 0.9716 20 6 3.9188 -0.8777 2.2674 21 6 4.3687 -1.8216 3.4016 22 6 4.3203 -3.2500 2.8314 23 6 3.8419 -3.1251 1.3700 24 1 -0.4850 0.8400 -0.0004 25 1 4.7642 0.3834 -3.5653 26 1 2.8575 1.7649 -6.3341 27 1 4.3974 1.4655 -5.7326 28 1 0.8344 1.1398 -5.1071 29 1 -0.0955 0.1117 -3.0750 30 1 5.2678 -1.6050 0.7066 31 1 2.8532 -0.6631 2.3497 32 1 4.4975 0.0458 2.2876 33 1 3.6903 -1.7353 4.2504 34 1 5.3851 -1.5769 3.7100 35 1 5.3135 -3.6981 2.8622 36 1 3.6191 -3.8571 3.4040 37 1 4.3644 -3.8407 0.7352 38 1 2.7643 -3.2765 1.3072 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346621985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:45 Heat of formation + Delta-G solvation = 6.942865 kcal Electronic energy + Delta-G solvation = -22225.476541 eV Core-core repulsion = 19067.763494 eV Total energy + Delta-G solvation = -3157.713047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61827 -40.18522 -38.37486 -36.56005 -35.61411 -33.57354 -32.15696 -30.55533 -29.51551 -28.75771 -26.60180 -25.10750 -23.86844 -21.85223 -21.29463 -20.92701 -19.27852 -18.37931 -17.90833 -17.41920 -16.98966 -16.50850 -16.29144 -15.90089 -15.77977 -15.27136 -15.17054 -14.95918 -14.65893 -14.46110 -14.07456 -13.60110 -13.14596 -13.05080 -12.90765 -12.60782 -12.43139 -12.04376 -11.99571 -11.87115 -11.80683 -11.39673 -11.14878 -11.05990 -10.94578 -10.04992 -9.47257 -9.20347 -8.87701 -8.19625 -5.98217 -0.10298 0.64604 1.22245 1.25783 1.37011 1.95773 2.30572 2.52184 2.92923 3.14522 3.32462 3.63925 3.87296 3.88072 3.97296 4.09887 4.14204 4.37499 4.52965 4.66767 4.68861 4.71258 4.77354 4.85223 4.93135 4.98756 5.01890 5.04827 5.17247 5.25217 5.40680 5.50299 5.59187 5.74678 6.00639 6.06372 6.39343 6.55301 6.92870 7.12706 7.40317 7.53109 7.86763 8.92520 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.023229 B = 0.007538 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.095012 B = 3713.498820 C = 4228.985011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.135 3.865 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.319 4.319 8 H 0.068 0.932 9 N -0.445 5.445 10 C 0.518 3.482 11 O -0.613 6.613 12 C 0.094 3.906 13 C -0.218 4.218 14 C 0.238 3.762 15 N -0.848 5.848 16 C -0.231 4.231 17 C 0.105 3.895 18 N -0.441 5.441 19 C 0.114 3.886 20 C -0.128 4.128 21 C -0.111 4.111 22 C -0.110 4.110 23 C -0.120 4.120 24 H 0.269 0.731 25 H 0.134 0.866 26 H 0.415 0.585 27 H 0.409 0.591 28 H 0.167 0.833 29 H 0.159 0.841 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 1.483 -4.808 6.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.072 4.072 3 Si 0.710 3.290 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.446 4.446 8 H 0.086 0.914 9 N -0.163 5.163 10 C 0.307 3.693 11 O -0.500 6.500 12 C -0.043 4.043 13 C -0.245 4.245 14 C 0.124 3.876 15 N -0.389 5.389 16 C -0.256 4.256 17 C -0.054 4.054 18 N -0.154 5.154 19 C 0.011 3.989 20 C -0.167 4.167 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.159 4.159 24 H 0.080 0.920 25 H 0.152 0.848 26 H 0.247 0.753 27 H 0.239 0.761 28 H 0.185 0.815 29 H 0.176 0.824 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.978 1.124 -4.044 5.783 hybrid contribution 0.624 1.591 -1.181 2.077 sum 4.602 2.716 -5.224 7.473 Atomic orbital electron populations 1.69608 1.06516 1.27279 1.48709 1.25229 0.94505 0.97551 0.89947 0.86883 0.80163 0.84206 0.77706 1.20960 1.21488 1.20168 1.18062 0.78650 0.93444 1.54437 0.91403 1.43563 1.07042 1.55746 1.09911 1.19035 0.86539 0.80403 0.83307 1.90547 1.15487 1.61921 1.81999 1.20998 0.91515 0.97701 0.94129 1.21589 1.01041 1.06287 0.95548 1.17798 0.92217 0.90191 0.87414 1.42152 1.10624 1.67032 1.19142 1.22054 0.93620 1.08142 1.01793 1.23204 1.00898 0.92650 0.88661 1.69204 1.02824 1.16316 1.27029 1.22383 0.94282 0.95272 0.86989 1.22602 1.01445 0.97850 0.94791 1.22033 1.01841 0.94145 0.96859 1.22024 1.01950 0.96889 0.93875 1.22500 1.01375 0.94611 0.97372 0.92033 0.84803 0.75325 0.76096 0.81541 0.82356 0.90693 0.91923 0.93725 0.90586 0.90513 0.90310 0.90422 0.92386 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.57 13.94 21.69 0.30 -48.27 16 2 C 0.14 7.31 3.22 84.97 0.27 7.58 16 3 Si 0.88 45.32 24.30 68.60 1.67 46.99 16 4 H -0.28 -14.69 6.71 99.48 0.67 -14.03 16 5 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.28 -14.70 6.78 99.48 0.67 -14.03 16 7 C -0.32 -17.27 6.35 84.13 0.53 -16.73 16 8 H 0.07 4.03 7.34 -2.91 -0.02 4.00 16 9 N -0.44 -22.85 1.80 -609.39 -1.10 -23.94 16 10 C 0.52 27.37 6.24 86.84 0.54 27.91 16 11 O -0.61 -33.42 15.72 -3.92 -0.06 -33.48 16 12 C 0.09 4.58 4.51 41.80 0.19 4.77 16 13 C -0.22 -8.89 9.52 22.77 0.22 -8.68 16 14 C 0.24 7.63 6.81 38.55 0.26 7.89 16 15 N -0.85 -17.46 9.08 -51.03 -0.46 -17.92 16 16 C -0.23 -7.29 10.00 22.56 0.23 -7.06 16 17 C 0.10 4.19 11.17 84.72 0.95 5.14 16 18 N -0.44 -21.37 4.25 -185.25 -0.79 -22.15 16 19 C 0.11 5.05 3.29 46.31 0.15 5.20 16 20 C -0.13 -5.19 5.98 31.70 0.19 -5.00 16 21 C -0.11 -3.31 6.80 31.32 0.21 -3.10 16 22 C -0.11 -3.15 6.80 31.32 0.21 -2.94 16 23 C -0.12 -4.54 6.37 31.67 0.20 -4.34 16 24 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 25 H 0.13 5.27 7.65 -2.91 -0.02 5.25 16 26 H 0.42 5.86 8.86 -92.71 -0.82 5.04 16 27 H 0.41 7.14 8.86 -92.71 -0.82 6.32 16 28 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.16 5.93 8.06 -2.91 -0.02 5.91 16 30 H 0.07 3.43 7.00 -2.39 -0.02 3.42 16 31 H 0.06 2.83 7.19 -2.39 -0.02 2.81 16 32 H 0.04 1.82 8.00 -2.39 -0.02 1.80 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.06 2.58 6.78 -2.39 -0.02 2.56 16 Total: -1.00 -68.98 303.55 3.10 -65.88 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.62 Total: 22.25 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 4.16 Total: 10.64 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -2.05 Total: -112.28 kcal Atomic # 8 Polarization: -33.42 SS G_CDS: -0.06 Total: -33.48 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.67 Total: 46.99 kcal Total: -68.98 3.10 -65.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346621985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.825 kcal (2) G-P(sol) polarization free energy of solvation -68.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds