Wall clock time and date at job start Mon Mar 30 2020 02:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 119.99987 * 2 1 4 4 H 1.48496 * 109.47414 * 240.00421 * 3 2 1 5 5 H 1.48504 * 109.46916 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47129 * 119.99921 * 3 2 1 7 7 C 1.40026 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00481 * 179.97438 * 7 2 1 9 9 C 1.41311 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.40593 * 119.78791 * 180.02562 * 9 7 2 11 11 C 1.38344 * 119.15256 * 179.97438 * 10 9 7 12 12 C 1.38635 * 118.68020 * 359.97438 * 11 10 9 13 13 C 1.39758 * 119.48963 * 0.02562 * 12 11 10 14 14 N 1.38827 * 119.58294 * 179.97438 * 13 12 11 15 15 C 1.48562 * 111.00243 * 300.13097 * 14 13 12 16 16 C 1.54379 * 104.59486 * 200.95932 * 15 14 13 17 17 C 1.54266 * 105.05973 * 23.85004 * 16 15 14 18 18 H 1.09003 * 110.32265 * 241.10234 * 17 16 15 19 19 C 1.53006 * 110.31977 * 118.89985 * 17 16 15 20 20 C 1.50694 * 109.47385 * 66.45334 * 19 17 16 21 21 N 1.34777 * 119.99765 * 179.97438 * 20 19 17 22 22 O 1.21283 * 120.00097 * 359.97438 * 20 19 17 23 23 C 1.48562 * 111.00055 * 184.70743 * 14 13 12 24 24 N 1.31978 * 120.83264 * 0.25472 * 13 12 11 25 25 H 0.96995 * 120.00604 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.42178 * 359.97438 * 10 9 7 27 27 H 1.08002 * 120.66017 * 180.02562 * 11 10 9 28 28 H 1.08005 * 120.25636 * 180.02562 * 12 11 10 29 29 H 1.08998 * 110.41528 * 82.17730 * 15 14 13 30 30 H 1.08999 * 110.41058 * 319.73493 * 15 14 13 31 31 H 1.08996 * 110.32596 * 264.95760 * 16 15 14 32 32 H 1.09000 * 110.41377 * 142.79352 * 16 15 14 33 33 H 1.09004 * 109.46382 * 186.45392 * 19 17 16 34 34 H 1.09002 * 109.46740 * 306.44819 * 19 17 16 35 35 H 0.96990 * 120.00474 * 0.02562 * 21 20 19 36 36 H 0.97001 * 119.99313 * 179.97438 * 21 20 19 37 37 H 1.09000 * 110.41111 * 40.26791 * 23 14 13 38 38 H 1.08989 * 110.41482 * 277.82056 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3011 -2.4364 -0.0005 10 6 2.0086 -3.6514 -0.0005 11 6 1.3037 -4.8417 0.0000 12 6 -0.0818 -4.7945 0.0011 13 6 -0.7280 -3.5553 0.0010 14 7 -2.1154 -3.5057 0.0016 15 6 -2.6728 -4.1827 -1.1976 16 6 -4.0948 -3.6007 -1.3471 17 6 -4.0457 -2.2341 -0.6331 18 1 -4.7502 -2.2158 0.1984 19 6 -4.3577 -1.1075 -1.6203 20 6 -5.7893 -1.2215 -2.0767 21 7 -6.2899 -0.3293 -2.9541 22 8 -6.4910 -2.1160 -1.6544 23 6 -2.5981 -2.1053 -0.1124 24 7 -0.0358 -2.4315 -0.0051 25 1 -0.4851 0.8400 0.0004 26 1 3.0886 -3.6553 -0.0010 27 1 1.8225 -5.7890 0.0004 28 1 -0.6575 -5.7083 0.0019 29 1 -2.7177 -5.2602 -1.0394 30 1 -2.0730 -3.9516 -2.0779 31 1 -4.8234 -4.2532 -0.8659 32 1 -4.3430 -3.4690 -2.4002 33 1 -4.2075 -0.1446 -1.1318 34 1 -3.6943 -1.1852 -2.4817 35 1 -5.7287 0.3859 -3.2921 36 1 -7.2114 -0.4030 -3.2481 37 1 -1.9867 -1.5491 -0.8229 38 1 -2.5869 -1.6188 0.8628 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346866648.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:17 Heat of formation + Delta-G solvation = 0.291131 kcal Electronic energy + Delta-G solvation = -21323.939663 eV Core-core repulsion = 18165.938175 eV Total energy + Delta-G solvation = -3158.001488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.85148 -38.87697 -37.07726 -33.78825 -33.66357 -32.62448 -30.56024 -29.68685 -28.10016 -26.69868 -25.14010 -22.14086 -21.60834 -20.76939 -19.82317 -19.27527 -17.52233 -17.18486 -16.52601 -16.01468 -15.70727 -14.84115 -14.62942 -14.44497 -14.21152 -13.65633 -13.25683 -13.13179 -12.65835 -12.34283 -12.10524 -11.87281 -11.54635 -11.24569 -11.12906 -11.02338 -10.78139 -10.57738 -10.53005 -10.42198 -10.07145 -9.95069 -9.82017 -9.71685 -9.42373 -8.65690 -8.03408 -7.59890 -6.99835 -6.43841 -4.53365 2.69542 2.73182 3.01190 3.04315 3.07729 3.20986 3.54419 3.91705 4.58631 4.78602 4.88093 5.08991 5.26356 5.33555 5.64397 5.67712 5.81295 5.91385 6.06504 6.12582 6.19127 6.27042 6.34798 6.55273 6.60379 6.63460 6.71776 6.77319 6.80780 7.00175 7.12413 7.16738 7.28317 7.39168 7.65527 7.79048 7.84317 8.16655 8.27406 8.37890 8.68831 8.98444 10.07220 10.28477 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.006134 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.150557 B = 4563.361425 C = 6156.639523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.718 5.718 2 C 0.073 3.927 3 Si 0.906 3.094 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.433 4.433 8 H 0.082 0.918 9 C 0.274 3.726 10 C -0.294 4.294 11 C -0.047 4.047 12 C -0.316 4.316 13 C 0.311 3.689 14 N -0.460 5.460 15 C 0.046 3.954 16 C -0.106 4.106 17 C -0.083 4.083 18 H 0.079 0.921 19 C -0.133 4.133 20 C 0.516 3.484 21 N -0.863 5.863 22 O -0.541 6.541 23 C 0.061 3.939 24 N -0.505 5.505 25 H 0.270 0.730 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.401 0.599 36 H 0.396 0.604 37 H 0.087 0.913 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.972 2.470 -5.771 10.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.339 5.339 2 C -0.152 4.152 3 Si 0.730 3.270 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.465 4.465 8 H 0.100 0.900 9 C 0.148 3.852 10 C -0.317 4.317 11 C -0.071 4.071 12 C -0.341 4.341 13 C 0.073 3.927 14 N -0.179 5.179 15 C -0.081 4.081 16 C -0.144 4.144 17 C -0.103 4.103 18 H 0.098 0.902 19 C -0.173 4.173 20 C 0.302 3.698 21 N -0.427 5.427 22 O -0.417 6.417 23 C -0.066 4.066 24 N -0.222 5.222 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.229 0.771 36 H 0.226 0.774 37 H 0.105 0.895 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.063 2.514 -4.888 10.599 hybrid contribution 1.075 0.590 -0.903 1.523 sum -7.988 3.104 -5.792 10.343 Atomic orbital electron populations 1.70096 1.07062 1.27437 1.29336 1.26007 0.94911 1.00825 0.93429 0.86425 0.80141 0.80579 0.79853 1.19077 1.20309 1.19016 1.19534 0.94164 0.89366 1.43387 0.89997 1.18336 0.87479 0.91927 0.87495 1.21648 0.98584 0.93510 1.17961 1.20714 0.93631 0.96588 0.96181 1.20723 0.94275 0.96026 1.23077 1.20003 0.88868 0.90477 0.93343 1.62501 1.06052 1.13561 1.35794 1.23041 0.94552 0.99173 0.91319 1.22262 0.95975 0.96419 0.99752 1.21779 0.98490 0.92964 0.97072 0.90219 1.21782 0.92262 1.02032 1.01247 1.20933 0.90332 0.80751 0.77772 1.43967 1.16969 1.33088 1.48631 1.90731 1.61292 1.33696 1.55993 1.22939 0.91317 0.89469 1.02877 1.68631 1.07798 1.24849 1.20958 0.91858 0.88513 0.88618 0.88748 0.90586 0.93818 0.91087 0.92167 0.88469 0.88748 0.77108 0.77355 0.89461 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.66 11.03 55.55 0.61 -17.05 16 2 C 0.07 1.78 5.50 -17.35 -0.10 1.68 16 3 Si 0.91 17.94 29.56 -169.99 -5.02 12.91 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 7 C -0.43 -11.32 9.14 -37.74 -0.34 -11.66 16 8 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 9 C 0.27 7.42 6.55 -85.00 -0.56 6.86 16 10 C -0.29 -7.31 9.83 -38.65 -0.38 -7.69 16 11 C -0.05 -1.07 10.15 -39.40 -0.40 -1.47 16 12 C -0.32 -7.40 9.41 -38.87 -0.37 -7.77 16 13 C 0.31 7.64 6.24 -155.31 -0.97 6.67 16 14 N -0.46 -9.85 5.41 -168.76 -0.91 -10.76 16 15 C 0.05 0.84 5.89 -2.18 -0.01 0.83 16 16 C -0.11 -1.69 5.53 -25.35 -0.14 -1.83 16 17 C -0.08 -1.34 2.69 -89.23 -0.24 -1.58 16 18 H 0.08 1.33 8.00 -51.93 -0.42 0.91 16 19 C -0.13 -1.71 4.90 -27.88 -0.14 -1.85 16 20 C 0.52 6.57 7.64 -10.99 -0.08 6.48 16 21 N -0.86 -7.24 8.87 31.22 0.28 -6.97 16 22 O -0.54 -8.96 15.94 5.55 0.09 -8.88 16 23 C 0.06 1.22 5.40 -2.18 -0.01 1.20 16 24 N -0.50 -13.43 5.96 -10.33 -0.06 -13.49 16 25 H 0.27 6.01 8.29 -40.82 -0.34 5.67 16 26 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 27 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.09 2.03 7.85 -52.48 -0.41 1.61 16 29 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16 30 H 0.04 0.83 7.97 -51.93 -0.41 0.41 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.90 7.38 -51.93 -0.38 0.52 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.40 2.28 8.83 -40.82 -0.36 1.92 16 36 H 0.40 2.87 8.93 -40.82 -0.36 2.51 16 37 H 0.09 1.91 6.53 -51.93 -0.34 1.57 16 38 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 315.27 15.07 4.75 4.75 Total: -1.00 -30.77 315.27 -9.19 -39.96 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.19 Total: 9.65 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -3.74 Total: -10.13 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.08 Total: -48.27 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.91 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.77 -9.19 -39.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346866648.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.250 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds