Wall clock time and date at job start Mon Mar 30 2020 02:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 119.99987 * 2 1 4 4 H 1.48496 * 109.47414 * 240.00421 * 3 2 1 5 5 H 1.48504 * 109.46916 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47129 * 119.99921 * 3 2 1 7 7 C 1.40026 * 120.00450 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00481 * 179.97438 * 7 2 1 9 9 C 1.41311 * 119.99823 * 359.97438 * 7 2 1 10 10 C 1.40593 * 119.78791 * 180.02562 * 9 7 2 11 11 C 1.38344 * 119.15256 * 179.97438 * 10 9 7 12 12 C 1.38635 * 118.68020 * 359.97438 * 11 10 9 13 13 C 1.39758 * 119.48963 * 0.02562 * 12 11 10 14 14 N 1.38827 * 119.58294 * 179.97438 * 13 12 11 15 15 C 1.48562 * 111.00243 * 300.13097 * 14 13 12 16 16 C 1.54379 * 104.59486 * 200.95932 * 15 14 13 17 17 C 1.54266 * 105.05973 * 23.85004 * 16 15 14 18 18 H 1.09003 * 110.32265 * 241.10234 * 17 16 15 19 19 C 1.53006 * 110.31977 * 118.89985 * 17 16 15 20 20 C 1.50694 * 109.47385 * 66.45334 * 19 17 16 21 21 N 1.34777 * 119.99765 * 179.97438 * 20 19 17 22 22 O 1.21283 * 120.00097 * 359.97438 * 20 19 17 23 23 C 1.48562 * 111.00055 * 184.70743 * 14 13 12 24 24 N 1.31978 * 120.83264 * 0.25472 * 13 12 11 25 25 H 0.96995 * 120.00604 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.42178 * 359.97438 * 10 9 7 27 27 H 1.08002 * 120.66017 * 180.02562 * 11 10 9 28 28 H 1.08005 * 120.25636 * 180.02562 * 12 11 10 29 29 H 1.08998 * 110.41528 * 82.17730 * 15 14 13 30 30 H 1.08999 * 110.41058 * 319.73493 * 15 14 13 31 31 H 1.08996 * 110.32596 * 264.95760 * 16 15 14 32 32 H 1.09000 * 110.41377 * 142.79352 * 16 15 14 33 33 H 1.09004 * 109.46382 * 186.45392 * 19 17 16 34 34 H 1.09002 * 109.46740 * 306.44819 * 19 17 16 35 35 H 0.96990 * 120.00474 * 0.02562 * 21 20 19 36 36 H 0.97001 * 119.99313 * 179.97438 * 21 20 19 37 37 H 1.09000 * 110.41111 * 40.26791 * 23 14 13 38 38 H 1.08989 * 110.41482 * 277.82056 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2763 2.7465 0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3011 -2.4364 -0.0005 10 6 2.0086 -3.6514 -0.0005 11 6 1.3037 -4.8417 0.0000 12 6 -0.0818 -4.7945 0.0011 13 6 -0.7280 -3.5553 0.0010 14 7 -2.1154 -3.5057 0.0016 15 6 -2.6728 -4.1827 -1.1976 16 6 -4.0948 -3.6007 -1.3471 17 6 -4.0457 -2.2341 -0.6331 18 1 -4.7502 -2.2158 0.1984 19 6 -4.3577 -1.1075 -1.6203 20 6 -5.7893 -1.2215 -2.0767 21 7 -6.2899 -0.3293 -2.9541 22 8 -6.4910 -2.1160 -1.6544 23 6 -2.5981 -2.1053 -0.1124 24 7 -0.0358 -2.4315 -0.0051 25 1 -0.4851 0.8400 0.0004 26 1 3.0886 -3.6553 -0.0010 27 1 1.8225 -5.7890 0.0004 28 1 -0.6575 -5.7083 0.0019 29 1 -2.7177 -5.2602 -1.0394 30 1 -2.0730 -3.9516 -2.0779 31 1 -4.8234 -4.2532 -0.8659 32 1 -4.3430 -3.4690 -2.4002 33 1 -4.2075 -0.1446 -1.1318 34 1 -3.6943 -1.1852 -2.4817 35 1 -5.7287 0.3859 -3.2921 36 1 -7.2114 -0.4030 -3.2481 37 1 -1.9867 -1.5491 -0.8229 38 1 -2.5869 -1.6188 0.8628 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346866648.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:17 Heat of formation + Delta-G solvation = -20.968500 kcal Electronic energy + Delta-G solvation = -21324.861550 eV Core-core repulsion = 18165.938175 eV Total energy + Delta-G solvation = -3158.923374 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.21157 -40.30946 -38.70135 -35.56396 -34.59280 -34.14902 -32.37702 -31.27191 -29.73689 -28.23501 -26.83623 -23.75693 -23.34058 -21.99041 -21.51093 -20.59513 -19.23315 -18.20970 -17.74845 -17.50915 -17.01372 -16.47848 -16.28232 -16.11313 -15.68894 -14.96004 -14.85008 -14.74465 -14.03472 -13.99658 -13.47428 -13.44693 -13.04097 -12.85051 -12.77254 -12.63749 -12.62460 -12.25792 -12.00423 -11.78695 -11.71045 -11.38386 -11.21135 -10.92147 -10.57803 -10.43257 -9.90999 -9.48343 -8.82459 -8.25888 -6.47258 0.90008 1.19483 1.43756 1.53788 1.57150 1.70471 2.25794 2.64580 2.82627 3.15004 3.69668 3.75275 3.89584 4.03750 4.20075 4.27802 4.35768 4.55716 4.56532 4.63539 4.80066 4.80767 4.86454 4.93867 4.95711 4.99863 5.11990 5.24356 5.30090 5.34184 5.52985 5.64602 5.87027 5.92762 5.96954 6.03972 6.29196 6.50998 6.52259 6.80875 7.08006 7.41489 8.18054 8.48273 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.006134 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.150557 B = 4563.361425 C = 6156.639523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.030 3.970 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.466 4.466 8 H 0.085 0.915 9 C 0.239 3.761 10 C -0.319 4.319 11 C -0.043 4.043 12 C -0.325 4.325 13 C 0.296 3.704 14 N -0.470 5.470 15 C 0.049 3.951 16 C -0.095 4.095 17 C -0.074 4.074 18 H 0.073 0.927 19 C -0.128 4.128 20 C 0.520 3.480 21 N -0.839 5.839 22 O -0.583 6.583 23 C 0.071 3.929 24 N -0.526 5.526 25 H 0.279 0.721 26 H 0.106 0.894 27 H 0.131 0.869 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.417 0.583 36 H 0.407 0.593 37 H 0.066 0.934 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.615 3.283 -6.747 11.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.193 4.193 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.498 4.498 8 H 0.103 0.897 9 C 0.113 3.887 10 C -0.341 4.341 11 C -0.067 4.067 12 C -0.350 4.350 13 C 0.058 3.942 14 N -0.189 5.189 15 C -0.077 4.077 16 C -0.133 4.133 17 C -0.094 4.094 18 H 0.092 0.908 19 C -0.168 4.168 20 C 0.305 3.695 21 N -0.403 5.403 22 O -0.463 6.463 23 C -0.056 4.056 24 N -0.245 5.245 25 H 0.090 0.910 26 H 0.124 0.876 27 H 0.149 0.851 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.248 0.752 36 H 0.238 0.762 37 H 0.085 0.915 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.722 3.344 -5.899 11.853 hybrid contribution 1.232 0.294 -0.595 1.399 sum -8.490 3.638 -6.494 11.291 Atomic orbital electron populations 1.70170 1.08345 1.28922 1.28640 1.26838 0.95855 1.03886 0.92694 0.85260 0.78743 0.75965 0.79675 1.18623 1.18910 1.19053 1.19878 0.94594 0.90419 1.44861 0.89732 1.18834 0.88237 0.93258 0.88394 1.21832 0.99243 0.93759 1.19290 1.21089 0.93665 0.97491 0.94503 1.21029 0.94833 0.96410 1.22678 1.20460 0.90197 0.90666 0.92926 1.62517 1.04550 1.14587 1.37257 1.23103 0.95311 0.99738 0.89595 1.22196 0.94398 0.96027 1.00634 1.21647 0.95503 0.94516 0.97749 0.90811 1.21689 0.92972 1.01310 1.00823 1.20763 0.89786 0.80827 0.78101 1.43724 1.17631 1.32189 1.46797 1.90723 1.62072 1.35655 1.57845 1.22749 0.93343 0.88427 1.01075 1.68627 1.07862 1.25984 1.22001 0.90981 0.87577 0.85091 0.86797 0.89343 0.94815 0.90872 0.90693 0.87112 0.87924 0.75219 0.76188 0.91524 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.92 11.03 21.84 0.24 -36.68 16 2 C 0.03 1.48 5.50 85.29 0.47 1.95 16 3 Si 0.98 36.65 29.56 68.60 2.03 38.68 16 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 6 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 7 C -0.47 -24.97 9.14 23.46 0.21 -24.75 16 8 H 0.08 4.28 7.85 -2.91 -0.02 4.25 16 9 C 0.24 13.30 6.55 40.19 0.26 13.56 16 10 C -0.32 -16.04 9.83 22.87 0.22 -15.82 16 11 C -0.04 -1.96 10.15 22.39 0.23 -1.73 16 12 C -0.32 -15.09 9.41 22.73 0.21 -14.88 16 13 C 0.30 14.73 6.24 133.40 0.83 15.56 16 14 N -0.47 -20.30 5.41 -687.83 -3.72 -24.02 16 15 C 0.05 1.74 5.89 86.45 0.51 2.25 16 16 C -0.09 -2.91 5.53 31.49 0.17 -2.74 16 17 C -0.07 -2.36 2.69 -9.89 -0.03 -2.38 16 18 H 0.07 2.44 8.00 -2.39 -0.02 2.42 16 19 C -0.13 -3.11 4.90 29.85 0.15 -2.96 16 20 C 0.52 12.18 7.64 87.66 0.67 12.85 16 21 N -0.84 -11.81 8.87 -173.54 -1.54 -13.35 16 22 O -0.58 -18.48 15.94 -3.04 -0.05 -18.53 16 23 C 0.07 2.89 5.40 86.45 0.47 3.36 16 24 N -0.53 -28.78 5.96 -186.59 -1.11 -29.89 16 25 H 0.28 12.46 8.29 -92.71 -0.77 11.69 16 26 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 27 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 28 H 0.11 4.74 7.85 -2.91 -0.02 4.71 16 29 H 0.09 2.90 7.99 -2.39 -0.02 2.88 16 30 H 0.03 1.26 7.97 -2.39 -0.02 1.24 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.07 2.10 7.38 -2.39 -0.02 2.09 16 33 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.42 3.43 8.83 -92.72 -0.82 2.62 16 36 H 0.41 4.77 8.93 -92.71 -0.83 3.94 16 37 H 0.07 2.99 6.53 -2.39 -0.02 2.98 16 38 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -67.77 315.27 -0.32 -68.09 By element: Atomic # 1 Polarization: 31.97 SS G_CDS: -0.56 Total: 31.42 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: 4.38 Total: -15.73 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -6.13 Total: -103.93 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.05 Total: -18.53 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Total: -67.77 -0.32 -68.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346866648.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.121 kcal (2) G-P(sol) polarization free energy of solvation -67.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds