Wall clock time and date at job start Mon Mar 30 2020 01:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 120.00040 * 2 1 4 4 H 1.09000 * 109.46879 * 244.99615 * 3 2 1 5 5 C 1.52997 * 109.47060 * 124.99567 * 3 2 1 6 6 O 1.42892 * 109.47333 * 304.99792 * 5 3 2 7 7 C 1.42901 * 114.00368 * 180.02562 * 6 5 3 8 8 N 1.46503 * 109.47272 * 4.99129 * 3 2 1 9 9 C 1.34768 * 120.00130 * 275.00498 * 8 3 2 10 10 O 1.21614 * 120.00458 * 359.97438 * 9 8 3 11 11 C 1.47434 * 119.99906 * 180.02562 * 9 8 3 12 12 C 1.39222 * 120.28282 * 355.36467 * 11 9 8 13 13 C 1.38217 * 120.09207 * 180.02562 * 12 11 9 14 14 C 1.38828 * 120.67883 * 0.02562 * 13 12 11 15 15 C 1.37596 * 120.56943 * 359.97438 * 14 13 12 16 16 C 1.40713 * 119.87703 * 359.68328 * 15 14 13 17 17 C 1.40894 * 120.32383 * 180.29583 * 16 15 14 18 18 H 1.08003 * 119.99971 * 215.84346 * 17 16 15 19 19 C 1.40271 * 120.00157 * 35.84680 * 17 16 15 20 20 N 1.30626 * 119.99939 * 8.97991 * 19 17 16 21 21 Si 1.86798 * 120.00025 * 188.97748 * 19 17 16 22 22 H 1.48501 * 109.47389 * 59.99804 * 21 19 17 23 23 H 1.48498 * 109.47440 * 180.02562 * 21 19 17 24 24 H 1.48510 * 109.47094 * 299.99920 * 21 19 17 25 25 H 1.08000 * 120.00093 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99460 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99460 * 179.97438 * 2 1 3 28 28 H 1.09008 * 109.46658 * 184.99477 * 5 3 2 29 29 H 1.09000 * 109.47060 * 65.00463 * 5 3 2 30 30 H 1.09005 * 109.46945 * 59.99008 * 7 6 5 31 31 H 1.08998 * 109.46904 * 300.00132 * 7 6 5 32 32 H 1.08993 * 109.47512 * 180.02562 * 7 6 5 33 33 H 0.96995 * 119.99367 * 95.00691 * 8 3 2 34 34 H 1.07999 * 119.95340 * 0.02681 * 12 11 9 35 35 H 1.08006 * 119.66109 * 180.02562 * 13 12 11 36 36 H 1.07995 * 119.71814 * 179.97438 * 14 13 12 37 37 H 1.07994 * 120.06197 * 179.97438 * 15 14 13 38 38 H 0.97006 * 119.99765 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 2.6214 1.4025 -0.9314 5 6 3.0350 1.3331 1.1817 6 8 2.3182 1.0891 2.3935 7 6 3.1372 1.0946 3.5645 8 7 1.1161 2.4161 0.1202 9 6 0.5154 2.9114 -0.9799 10 8 0.7602 2.4366 -2.0724 11 6 -0.4376 4.0298 -0.8589 12 6 -0.7947 4.5153 0.3961 13 6 -1.6890 5.5636 0.5049 14 6 -2.2413 6.1440 -0.6288 15 6 -1.9077 5.6861 -1.8827 16 6 -0.9942 4.6248 -2.0213 17 6 -0.6412 4.1525 -3.3009 18 1 -0.4604 3.0992 -3.4569 19 6 -0.5244 5.0503 -4.3723 20 7 -0.5689 6.3374 -4.1537 21 14 -0.3053 4.4054 -6.1117 22 1 -1.4706 3.5606 -6.4770 23 1 -0.2068 5.5483 -7.0547 24 1 0.9367 3.5945 -6.1862 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.5153 2.3102 1.2340 29 1 3.7937 0.5622 1.0467 30 1 3.6194 2.0669 3.6661 31 1 3.8982 0.3189 3.4792 32 1 2.5190 0.9017 4.4412 33 1 0.9212 2.7950 0.9915 34 1 -0.3724 4.0721 1.2859 35 1 -1.9608 5.9350 1.4820 36 1 -2.9388 6.9621 -0.5258 37 1 -2.3426 6.1434 -2.7591 38 1 -0.4878 6.9583 -4.8946 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348600760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:16 Heat of formation + Delta-G solvation = -35.220951 kcal Electronic energy + Delta-G solvation = -21208.793620 eV Core-core repulsion = 18016.959462 eV Total energy + Delta-G solvation = -3191.834158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.35372 -37.96027 -36.79005 -34.97315 -33.66182 -31.70321 -29.99181 -29.67603 -28.73862 -26.32046 -25.33580 -23.08760 -22.05290 -20.88750 -19.55090 -18.97690 -17.44965 -16.68589 -16.37580 -15.91089 -15.36712 -15.20613 -14.85109 -14.42542 -14.11255 -13.72508 -13.15886 -13.12244 -12.66757 -12.61997 -12.13006 -12.02946 -11.89841 -11.56283 -11.33558 -11.08898 -11.01135 -10.70998 -10.63922 -10.47005 -10.08516 -9.75098 -9.63817 -9.22298 -8.92218 -8.38308 -8.31890 -7.55726 -7.30170 -6.76527 -4.35968 2.39471 2.74769 2.85678 3.11538 3.18039 3.27641 3.68917 4.00425 4.01856 4.21424 4.72636 4.99108 5.08308 5.21570 5.30667 5.37077 5.54034 5.61341 5.63574 5.69670 5.82713 6.04451 6.21885 6.32105 6.33349 6.65212 6.97222 6.98186 7.03031 7.09399 7.16247 7.24120 7.40500 7.49774 7.65800 7.91954 8.03013 8.21659 8.45393 8.71680 8.86841 8.94399 9.47190 10.19664 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.005704 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.952838 B = 4907.340629 C = 5873.487835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.166 4.166 3 C 0.180 3.820 4 H 0.105 0.895 5 C 0.059 3.941 6 O -0.382 6.382 7 C 0.031 3.969 8 N -0.739 5.739 9 C 0.566 3.434 10 O -0.537 6.537 11 C -0.261 4.261 12 C -0.057 4.057 13 C -0.245 4.245 14 C -0.096 4.096 15 C -0.147 4.147 16 C 0.148 3.852 17 C -0.423 4.423 18 H 0.110 0.890 19 C 0.069 3.931 20 N -0.795 5.795 21 Si 0.916 3.084 22 H -0.263 1.263 23 H -0.280 1.280 24 H -0.263 1.263 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.353 -6.704 9.266 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C 0.074 3.926 4 H 0.122 0.878 5 C -0.018 4.018 6 O -0.300 6.300 7 C -0.065 4.065 8 N -0.394 5.394 9 C 0.360 3.640 10 O -0.415 6.415 11 C -0.266 4.266 12 C -0.076 4.076 13 C -0.264 4.264 14 C -0.115 4.115 15 C -0.166 4.166 16 C 0.144 3.856 17 C -0.451 4.451 18 H 0.128 0.872 19 C -0.149 4.149 20 N -0.421 5.421 21 Si 0.741 3.259 22 H -0.188 1.188 23 H -0.206 1.206 24 H -0.187 1.187 25 H 0.107 0.893 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.366 -6.845 8.329 12.042 hybrid contribution 0.415 0.133 -0.163 0.465 sum 5.781 -6.711 8.167 12.048 Atomic orbital electron populations 1.23776 0.96258 1.01697 0.99057 1.23007 0.96556 0.97235 1.01757 1.19831 0.90121 0.85770 0.96845 0.87783 1.22821 0.94253 1.00193 0.84583 1.87958 1.34839 1.92916 1.14331 1.22723 0.95600 0.99879 0.88346 1.46006 1.46790 1.35955 1.10630 1.18403 0.80121 0.82524 0.82962 1.90654 1.63910 1.60901 1.26036 1.19469 1.07661 1.05304 0.94119 1.20677 0.96408 0.95594 0.94908 1.20285 1.06636 1.02773 0.96699 1.20796 0.99007 0.98250 0.93424 1.21330 0.99522 1.00151 0.95625 1.17480 0.87354 0.89017 0.91756 1.20271 1.36038 0.97225 0.91585 0.87195 1.26134 0.92603 0.94386 1.01734 1.69715 1.35192 1.02777 1.34401 0.86222 0.80333 0.79090 0.80269 1.18762 1.20559 1.18692 0.89341 0.87887 0.87604 0.92490 0.92236 0.94166 0.94348 0.89772 0.76807 0.89164 0.89131 0.89128 0.86718 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 13.82 29.01 0.40 -2.44 16 2 C -0.17 -2.55 9.03 -36.03 -0.33 -2.88 16 3 C 0.18 2.82 2.92 -69.08 -0.20 2.61 16 4 H 0.10 1.75 7.58 -51.93 -0.39 1.36 16 5 C 0.06 0.71 5.67 37.16 0.21 0.92 16 6 O -0.38 -4.83 9.91 -35.23 -0.35 -5.17 16 7 C 0.03 0.28 11.01 101.05 1.11 1.39 16 8 N -0.74 -13.47 3.94 -56.01 -0.22 -13.69 16 9 C 0.57 13.05 6.31 -12.52 -0.08 12.98 16 10 O -0.54 -13.97 13.19 5.27 0.07 -13.90 16 11 C -0.26 -6.40 5.92 -104.37 -0.62 -7.02 16 12 C -0.06 -1.24 9.52 -39.22 -0.37 -1.61 16 13 C -0.24 -5.26 10.03 -39.37 -0.39 -5.66 16 14 C -0.10 -2.18 10.01 -39.60 -0.40 -2.58 16 15 C -0.15 -3.76 8.62 -38.88 -0.34 -4.10 16 16 C 0.15 3.99 5.48 -106.54 -0.58 3.41 16 17 C -0.42 -11.69 7.78 -37.81 -0.29 -11.98 16 18 H 0.11 3.15 5.73 -52.48 -0.30 2.85 16 19 C 0.07 1.80 5.25 -17.30 -0.09 1.71 16 20 N -0.80 -20.78 11.25 55.56 0.63 -20.15 16 21 Si 0.92 19.84 29.57 -169.99 -5.03 14.82 16 22 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.26 -5.81 7.11 56.52 0.40 -5.40 16 25 H 0.09 1.28 8.06 -52.49 -0.42 0.86 16 26 H 0.10 1.97 5.91 -52.49 -0.31 1.66 16 27 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 28 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 6.68 6.43 -40.82 -0.26 6.42 16 34 H 0.09 1.66 6.42 -52.49 -0.34 1.32 16 35 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.11 2.99 6.72 -52.49 -0.35 2.64 16 38 H 0.28 6.72 8.29 -40.82 -0.34 6.38 16 LS Contribution 320.59 15.07 4.83 4.83 Total: -1.00 -30.02 320.59 -6.94 -36.96 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -4.90 Total: 11.55 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -1.97 Total: -15.24 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.40 Total: -33.84 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.28 Total: -19.07 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.82 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.02 -6.94 -36.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348600760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.738 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds