Wall clock time and date at job start Mon Mar 30 2020 01:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50701 * 120.00040 * 2 1 4 4 H 1.09000 * 109.46879 * 244.99615 * 3 2 1 5 5 C 1.52997 * 109.47060 * 124.99567 * 3 2 1 6 6 O 1.42892 * 109.47333 * 304.99792 * 5 3 2 7 7 C 1.42901 * 114.00368 * 180.02562 * 6 5 3 8 8 N 1.46503 * 109.47272 * 4.99129 * 3 2 1 9 9 C 1.34768 * 120.00130 * 275.00498 * 8 3 2 10 10 O 1.21614 * 120.00458 * 359.97438 * 9 8 3 11 11 C 1.47434 * 119.99906 * 180.02562 * 9 8 3 12 12 C 1.39222 * 120.28282 * 355.36467 * 11 9 8 13 13 C 1.38217 * 120.09207 * 180.02562 * 12 11 9 14 14 C 1.38828 * 120.67883 * 0.02562 * 13 12 11 15 15 C 1.37596 * 120.56943 * 359.97438 * 14 13 12 16 16 C 1.40713 * 119.87703 * 359.68328 * 15 14 13 17 17 C 1.40894 * 120.32383 * 180.29583 * 16 15 14 18 18 H 1.08003 * 119.99971 * 215.84346 * 17 16 15 19 19 C 1.40271 * 120.00157 * 35.84680 * 17 16 15 20 20 N 1.30626 * 119.99939 * 8.97991 * 19 17 16 21 21 Si 1.86798 * 120.00025 * 188.97748 * 19 17 16 22 22 H 1.48501 * 109.47389 * 59.99804 * 21 19 17 23 23 H 1.48498 * 109.47440 * 180.02562 * 21 19 17 24 24 H 1.48510 * 109.47094 * 299.99920 * 21 19 17 25 25 H 1.08000 * 120.00093 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.99460 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.99460 * 179.97438 * 2 1 3 28 28 H 1.09008 * 109.46658 * 184.99477 * 5 3 2 29 29 H 1.09000 * 109.47060 * 65.00463 * 5 3 2 30 30 H 1.09005 * 109.46945 * 59.99008 * 7 6 5 31 31 H 1.08998 * 109.46904 * 300.00132 * 7 6 5 32 32 H 1.08993 * 109.47512 * 180.02562 * 7 6 5 33 33 H 0.96995 * 119.99367 * 95.00691 * 8 3 2 34 34 H 1.07999 * 119.95340 * 0.02681 * 12 11 9 35 35 H 1.08006 * 119.66109 * 180.02562 * 13 12 11 36 36 H 1.07995 * 119.71814 * 179.97438 * 14 13 12 37 37 H 1.07994 * 120.06197 * 179.97438 * 15 14 13 38 38 H 0.97006 * 119.99765 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 1 2.6214 1.4025 -0.9314 5 6 3.0350 1.3331 1.1817 6 8 2.3182 1.0891 2.3935 7 6 3.1372 1.0946 3.5645 8 7 1.1161 2.4161 0.1202 9 6 0.5154 2.9114 -0.9799 10 8 0.7602 2.4366 -2.0724 11 6 -0.4376 4.0298 -0.8589 12 6 -0.7947 4.5153 0.3961 13 6 -1.6890 5.5636 0.5049 14 6 -2.2413 6.1440 -0.6288 15 6 -1.9077 5.6861 -1.8827 16 6 -0.9942 4.6248 -2.0213 17 6 -0.6412 4.1525 -3.3009 18 1 -0.4604 3.0992 -3.4569 19 6 -0.5244 5.0503 -4.3723 20 7 -0.5689 6.3374 -4.1537 21 14 -0.3053 4.4054 -6.1117 22 1 -1.4706 3.5606 -6.4770 23 1 -0.2068 5.5483 -7.0547 24 1 0.9367 3.5945 -6.1862 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 3.5153 2.3102 1.2340 29 1 3.7937 0.5622 1.0467 30 1 3.6194 2.0669 3.6661 31 1 3.8982 0.3189 3.4792 32 1 2.5190 0.9017 4.4412 33 1 0.9212 2.7950 0.9915 34 1 -0.3724 4.0721 1.2859 35 1 -1.9608 5.9350 1.4820 36 1 -2.9388 6.9621 -0.5258 37 1 -2.3426 6.1434 -2.7591 38 1 -0.4878 6.9583 -4.8946 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348600760.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:15 Heat of formation + Delta-G solvation = -53.935241 kcal Electronic energy + Delta-G solvation = -21209.605132 eV Core-core repulsion = 18016.959462 eV Total energy + Delta-G solvation = -3192.645671 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.96513 -39.24169 -38.37497 -36.44135 -35.53017 -33.25396 -31.75519 -31.32683 -30.07714 -27.37065 -26.99083 -24.47104 -23.60186 -22.71088 -21.23132 -20.38320 -19.29208 -18.08374 -17.71374 -17.09957 -16.96771 -16.49796 -16.16113 -15.99624 -15.69345 -15.09208 -14.91787 -14.78313 -14.46923 -14.07375 -13.52881 -13.43408 -13.10719 -12.96994 -12.85356 -12.82792 -12.43828 -12.32164 -12.24599 -11.92144 -11.89776 -11.46765 -11.12142 -10.59611 -10.18577 -10.17622 -9.97035 -9.38992 -9.20044 -8.65998 -6.35290 0.53777 1.02978 1.34161 1.45719 1.48866 1.51584 2.22212 2.38069 2.46080 2.81085 2.90267 3.73113 3.88746 4.04846 4.31811 4.34878 4.41187 4.47378 4.56094 4.58980 4.62019 4.65890 4.69889 4.92467 4.95368 5.05006 5.11102 5.25949 5.35485 5.60190 5.63573 5.72274 5.83367 6.02567 6.07879 6.13030 6.27032 6.36374 6.67502 6.82962 6.94384 7.03914 7.71663 8.32222 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.005704 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.952838 B = 4907.340629 C = 5873.487835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.156 4.156 3 C 0.169 3.831 4 H 0.091 0.909 5 C 0.068 3.932 6 O -0.405 6.405 7 C 0.026 3.974 8 N -0.720 5.720 9 C 0.564 3.436 10 O -0.574 6.574 11 C -0.279 4.279 12 C -0.055 4.055 13 C -0.236 4.236 14 C -0.092 4.092 15 C -0.176 4.176 16 C 0.117 3.883 17 C -0.463 4.463 18 H 0.087 0.913 19 C 0.033 3.967 20 N -0.825 5.825 21 Si 0.978 3.022 22 H -0.259 1.259 23 H -0.260 1.260 24 H -0.272 1.272 25 H 0.107 0.893 26 H 0.073 0.927 27 H 0.137 0.863 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.405 0.595 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.098 0.902 38 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.228 -7.185 11.448 14.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.175 4.175 3 C 0.065 3.935 4 H 0.108 0.892 5 C -0.009 4.009 6 O -0.324 6.324 7 C -0.070 4.070 8 N -0.374 5.374 9 C 0.358 3.642 10 O -0.455 6.455 11 C -0.284 4.284 12 C -0.074 4.074 13 C -0.255 4.255 14 C -0.111 4.111 15 C -0.195 4.195 16 C 0.113 3.887 17 C -0.492 4.492 18 H 0.105 0.895 19 C -0.182 4.182 20 N -0.451 5.451 21 Si 0.800 3.200 22 H -0.183 1.183 23 H -0.184 1.184 24 H -0.197 1.197 25 H 0.125 0.875 26 H 0.091 0.909 27 H 0.155 0.845 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.242 0.758 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.247 -7.322 10.571 14.297 hybrid contribution 0.157 0.256 -0.574 0.648 sum 6.404 -7.066 9.997 13.816 Atomic orbital electron populations 1.23766 0.96905 1.01267 1.01148 1.23261 0.96268 0.98171 0.99805 1.20108 0.90127 0.84942 0.98356 0.89152 1.22703 0.93238 1.01666 0.83252 1.87914 1.36201 1.93123 1.15166 1.22914 0.95926 1.00941 0.87211 1.45780 1.46067 1.36003 1.09534 1.18339 0.80107 0.82264 0.83503 1.90630 1.65076 1.62071 1.27763 1.19878 1.07954 1.05744 0.94821 1.21052 0.95999 0.95377 0.94976 1.20789 1.05011 1.01642 0.98015 1.21171 0.98766 0.98464 0.92698 1.21277 1.00609 1.01110 0.96501 1.17858 0.88056 0.90166 0.92581 1.20220 1.39143 0.96574 0.93282 0.89502 1.26796 0.92030 0.94494 1.04898 1.69741 1.36342 1.03455 1.35581 0.85319 0.79652 0.78889 0.76181 1.18344 1.18385 1.19732 0.87489 0.90873 0.84536 0.91909 0.89348 0.93401 0.92782 0.88799 0.75823 0.85523 0.85064 0.86206 0.88419 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.35 13.82 67.77 0.94 -5.41 16 2 C -0.16 -4.56 9.03 25.64 0.23 -4.33 16 3 C 0.17 5.10 2.92 44.24 0.13 5.23 16 4 H 0.09 3.02 7.58 -2.39 -0.02 3.00 16 5 C 0.07 1.47 5.67 71.98 0.41 1.88 16 6 O -0.40 -9.02 9.91 -148.98 -1.48 -10.49 16 7 C 0.03 0.38 11.01 113.37 1.25 1.63 16 8 N -0.72 -25.84 3.94 -449.36 -1.77 -27.61 16 9 C 0.56 26.66 6.31 86.67 0.55 27.20 16 10 O -0.57 -31.26 13.19 -4.07 -0.05 -31.31 16 11 C -0.28 -13.93 5.92 -19.70 -0.12 -14.05 16 12 C -0.06 -2.30 9.52 22.50 0.21 -2.09 16 13 C -0.24 -9.47 10.03 22.41 0.22 -9.24 16 14 C -0.09 -4.09 10.01 22.26 0.22 -3.87 16 15 C -0.18 -9.22 8.62 22.72 0.20 -9.03 16 16 C 0.12 6.57 5.48 -21.11 -0.12 6.46 16 17 C -0.46 -27.08 7.78 23.42 0.18 -26.90 16 18 H 0.09 5.35 5.73 -2.91 -0.02 5.33 16 19 C 0.03 1.75 5.25 85.37 0.45 2.20 16 20 N -0.82 -44.68 11.25 21.88 0.25 -44.44 16 21 Si 0.98 42.27 29.57 68.60 2.03 44.30 16 22 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H 0.11 3.02 8.06 -2.91 -0.02 2.99 16 26 H 0.07 2.84 5.91 -2.91 -0.02 2.82 16 27 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 28 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.41 12.99 6.43 -92.71 -0.60 12.39 16 34 H 0.13 4.25 6.42 -2.91 -0.02 4.23 16 35 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 37 H 0.10 5.35 6.72 -2.91 -0.02 5.33 16 38 H 0.29 14.15 8.29 -92.70 -0.77 13.38 16 Total: -1.00 -68.72 320.59 4.20 -64.52 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.47 Total: 35.35 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 4.76 Total: -30.31 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.53 Total: -72.05 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.53 Total: -41.81 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -68.72 4.20 -64.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348600760.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.582 kcal (2) G-P(sol) polarization free energy of solvation -68.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds