Wall clock time and date at job start Mon Mar 30 2020 02:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48498 * 109.46746 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47123 * 300.00078 * 3 2 1 6 6 H 1.48495 * 109.46919 * 60.00304 * 3 2 1 7 7 C 1.37870 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99505 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00650 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49857 * 59.93606 * 9 7 2 11 11 C 1.53039 * 109.50285 * 180.02562 * 9 7 2 12 12 C 1.53037 * 109.54249 * 181.31773 * 11 9 7 13 13 C 1.53196 * 109.30907 * 298.63173 * 12 11 9 14 14 N 1.46929 * 108.77382 * 54.63666 * 13 12 11 15 15 C 1.34780 * 120.63263 * 126.36824 * 14 13 12 16 16 O 1.21518 * 119.99635 * 352.03309 * 15 14 13 17 17 C 1.48182 * 120.00249 * 172.30820 * 15 14 13 18 18 C 1.39036 * 119.69085 * 170.17022 * 17 15 14 19 19 C 1.39452 * 118.95565 * 180.02562 * 18 17 15 20 20 N 1.39186 * 120.82819 * 179.97438 * 19 18 17 21 21 C 1.39415 * 118.33469 * 0.02562 * 19 18 17 22 22 C 1.38227 * 119.26785 * 359.97438 * 21 19 18 23 23 N 1.31652 * 120.99010 * 359.73226 * 22 21 19 24 24 C 1.46925 * 118.74038 * 306.64018 * 14 13 12 25 25 H 0.97004 * 120.00520 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.45994 * 61.29013 * 11 9 7 27 27 H 1.09000 * 109.44522 * 301.32871 * 11 9 7 28 28 H 1.08999 * 109.50087 * 178.68601 * 12 11 9 29 29 H 1.08999 * 109.49666 * 58.58094 * 12 11 9 30 30 H 1.08994 * 109.59442 * 294.84928 * 13 12 11 31 31 H 1.08999 * 109.70223 * 174.48814 * 13 12 11 32 32 H 1.07997 * 120.51767 * 359.97438 * 18 17 15 33 33 H 0.97006 * 120.00744 * 359.97438 * 20 19 18 34 34 H 0.97000 * 120.00171 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.36451 * 179.97438 * 21 19 18 36 36 H 1.08002 * 119.50548 * 180.02562 * 22 21 19 37 37 H 1.08994 * 109.59016 * 173.14323 * 24 14 13 38 38 H 1.09004 * 109.58677 * 293.57385 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6231 -2.5567 -0.8896 11 6 2.2450 -3.6628 -0.0005 12 6 1.4811 -4.9885 -0.0337 13 6 0.6059 -5.1003 1.2186 14 7 -0.2527 -3.9110 1.3032 15 6 -1.5892 -4.0361 1.4248 16 8 -2.1090 -5.1295 1.3204 17 6 -2.4252 -2.8395 1.6798 18 6 -3.8099 -2.9373 1.6010 19 6 -4.5818 -1.8015 1.8433 20 7 -5.9710 -1.8551 1.7744 21 6 -3.9272 -0.6108 2.1553 22 6 -2.5463 -0.5942 2.2144 23 7 -1.8449 -1.6846 1.9861 24 6 0.3726 -2.5827 1.2465 25 1 -0.4851 0.8400 -0.0004 26 1 2.8563 -3.6183 0.9009 27 1 2.8871 -3.5917 -0.8785 28 1 2.1898 -5.8163 -0.0572 29 1 0.8509 -5.0230 -0.9223 30 1 1.2396 -5.1570 2.1036 31 1 -0.0139 -5.9946 1.1551 32 1 -4.2801 -3.8779 1.3551 33 1 -6.4139 -2.6898 1.5552 34 1 -6.4962 -1.0577 1.9448 35 1 -4.4929 0.2887 2.3485 36 1 -2.0353 0.3261 2.4561 37 1 -0.4009 -1.8163 1.1988 38 1 0.9871 -2.4299 2.1338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348862192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:14 Heat of formation + Delta-G solvation = 12.283211 kcal Electronic energy + Delta-G solvation = -21875.628640 eV Core-core repulsion = 18718.147168 eV Total energy + Delta-G solvation = -3157.481472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.20866 -38.64555 -36.58304 -35.20475 -33.05869 -31.96900 -30.79897 -29.73082 -29.28353 -25.29888 -24.81271 -23.22862 -22.65029 -21.54593 -19.94050 -18.66076 -17.34034 -16.79037 -16.35310 -15.83804 -15.36800 -14.87076 -14.65404 -14.47159 -14.19460 -13.80269 -13.43860 -13.31596 -13.00822 -12.70870 -12.37556 -11.99287 -11.75054 -11.45443 -11.30122 -10.96545 -10.79539 -10.41477 -10.27307 -10.14103 -9.92344 -9.54229 -9.32061 -8.90002 -8.74568 -8.42973 -8.03767 -7.62208 -7.59220 -5.94684 -4.00092 1.23194 1.89261 3.30438 3.38929 3.40271 3.43542 3.63576 3.94645 4.45924 4.50828 4.83439 5.14547 5.28214 5.35722 5.58967 5.60844 5.69707 5.79644 5.89510 6.09669 6.19616 6.20262 6.27299 6.39092 6.49374 6.72074 6.84249 6.88656 6.94932 7.13690 7.25014 7.40016 7.54260 7.68096 7.81785 8.02257 8.19139 8.39772 8.42848 8.68142 8.91309 9.02605 9.63372 11.09862 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.008252 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.128272 B = 3392.180061 C = 5165.913833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.036 3.964 10 H 0.024 0.976 11 C -0.113 4.113 12 C -0.132 4.132 13 C 0.109 3.891 14 N -0.581 5.581 15 C 0.564 3.436 16 O -0.569 6.569 17 C 0.126 3.874 18 C -0.197 4.197 19 C 0.236 3.764 20 N -0.870 5.870 21 C -0.240 4.240 22 C 0.151 3.849 23 N -0.444 5.444 24 C 0.072 3.928 25 H 0.257 0.743 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.399 0.601 34 H 0.399 0.601 35 H 0.128 0.872 36 H 0.156 0.844 37 H 0.186 0.814 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.535 -2.155 4.457 9.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.017 3.983 10 H 0.042 0.958 11 C -0.150 4.150 12 C -0.170 4.170 13 C -0.014 4.014 14 N -0.310 5.310 15 C 0.351 3.649 16 O -0.449 6.449 17 C -0.012 4.012 18 C -0.223 4.223 19 C 0.124 3.876 20 N -0.410 5.410 21 C -0.265 4.265 22 C -0.007 4.007 23 N -0.158 5.158 24 C -0.048 4.048 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.154 0.846 33 H 0.228 0.772 34 H 0.227 0.773 35 H 0.146 0.854 36 H 0.173 0.827 37 H 0.201 0.799 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.954 -2.586 4.462 9.480 hybrid contribution -0.684 1.042 -0.215 1.265 sum -8.638 -1.544 4.247 9.748 Atomic orbital electron populations 1.69912 1.05490 1.25943 1.50039 1.24953 0.94887 0.98769 0.94981 0.86609 0.80252 0.84128 0.77391 1.19992 1.21302 1.21055 1.21091 0.92831 0.90162 1.51061 0.92590 1.18971 0.92727 0.92132 0.94485 0.95782 1.21665 0.98638 0.94421 1.00318 1.21921 0.98469 0.98913 0.97668 1.21554 0.92998 0.88937 0.97877 1.48471 1.04956 1.09861 1.67684 1.18014 0.82416 0.87049 0.77383 1.90659 1.73196 1.27156 1.53939 1.20924 0.90731 0.92666 0.96832 1.21369 0.93707 0.98527 1.08714 1.17823 0.84421 0.93508 0.91892 1.42270 1.03031 1.15003 1.80678 1.21692 0.96551 0.97156 1.11136 1.22616 0.89702 0.96968 0.91427 1.67981 1.37219 0.98164 1.12411 1.23659 1.01539 0.81872 0.97711 0.93267 0.93289 0.93304 0.92373 0.92293 0.92194 0.90285 0.84567 0.77235 0.77290 0.85436 0.82666 0.79895 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.16 11.39 55.43 0.63 -22.52 16 2 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.69 8.56 -34.45 -0.29 -13.99 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.09 16 9 C 0.04 0.90 2.24 -91.87 -0.21 0.69 16 10 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 11 C -0.11 -2.38 5.11 -26.69 -0.14 -2.52 16 12 C -0.13 -2.44 6.08 -26.61 -0.16 -2.60 16 13 C 0.11 2.09 6.45 -3.71 -0.02 2.07 16 14 N -0.58 -12.80 2.98 -174.01 -0.52 -13.32 16 15 C 0.56 12.51 7.65 -12.17 -0.09 12.42 16 16 O -0.57 -13.04 15.79 5.35 0.08 -12.96 16 17 C 0.13 2.57 6.56 -83.06 -0.55 2.03 16 18 C -0.20 -3.38 9.52 -38.83 -0.37 -3.75 16 19 C 0.24 3.36 6.81 -83.63 -0.57 2.79 16 20 N -0.87 -8.48 9.08 32.52 0.30 -8.18 16 21 C -0.24 -3.44 10.00 -39.15 -0.39 -3.83 16 22 C 0.15 2.61 11.17 -17.63 -0.20 2.41 16 23 N -0.44 -9.12 6.15 -9.89 -0.06 -9.18 16 24 C 0.07 1.72 4.81 -3.93 -0.02 1.70 16 25 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.48 7.00 -51.93 -0.36 1.11 16 32 H 0.14 2.22 7.67 -52.49 -0.40 1.82 16 33 H 0.40 3.26 8.86 -40.82 -0.36 2.90 16 34 H 0.40 2.92 8.86 -40.82 -0.36 2.55 16 35 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 37 H 0.19 4.54 2.16 -82.48 -0.18 4.36 16 38 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 310.22 15.07 4.68 4.68 Total: -1.00 -30.41 310.22 -8.03 -38.44 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.01 Total: 8.50 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -3.10 Total: -0.92 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.35 Total: -53.21 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.08 Total: -12.96 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.41 -8.03 -38.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348862192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.719 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds