Wall clock time and date at job start Mon Mar 30 2020 02:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48498 * 109.46746 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47123 * 300.00078 * 3 2 1 6 6 H 1.48495 * 109.46919 * 60.00304 * 3 2 1 7 7 C 1.37870 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99505 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00650 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.49857 * 59.93606 * 9 7 2 11 11 C 1.53039 * 109.50285 * 180.02562 * 9 7 2 12 12 C 1.53037 * 109.54249 * 181.31773 * 11 9 7 13 13 C 1.53196 * 109.30907 * 298.63173 * 12 11 9 14 14 N 1.46929 * 108.77382 * 54.63666 * 13 12 11 15 15 C 1.34780 * 120.63263 * 126.36824 * 14 13 12 16 16 O 1.21518 * 119.99635 * 352.03309 * 15 14 13 17 17 C 1.48182 * 120.00249 * 172.30820 * 15 14 13 18 18 C 1.39036 * 119.69085 * 170.17022 * 17 15 14 19 19 C 1.39452 * 118.95565 * 180.02562 * 18 17 15 20 20 N 1.39186 * 120.82819 * 179.97438 * 19 18 17 21 21 C 1.39415 * 118.33469 * 0.02562 * 19 18 17 22 22 C 1.38227 * 119.26785 * 359.97438 * 21 19 18 23 23 N 1.31652 * 120.99010 * 359.73226 * 22 21 19 24 24 C 1.46925 * 118.74038 * 306.64018 * 14 13 12 25 25 H 0.97004 * 120.00520 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.45994 * 61.29013 * 11 9 7 27 27 H 1.09000 * 109.44522 * 301.32871 * 11 9 7 28 28 H 1.08999 * 109.50087 * 178.68601 * 12 11 9 29 29 H 1.08999 * 109.49666 * 58.58094 * 12 11 9 30 30 H 1.08994 * 109.59442 * 294.84928 * 13 12 11 31 31 H 1.08999 * 109.70223 * 174.48814 * 13 12 11 32 32 H 1.07997 * 120.51767 * 359.97438 * 18 17 15 33 33 H 0.97006 * 120.00744 * 359.97438 * 20 19 18 34 34 H 0.97000 * 120.00171 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.36451 * 179.97438 * 21 19 18 36 36 H 1.08002 * 119.50548 * 180.02562 * 22 21 19 37 37 H 1.08994 * 109.59016 * 173.14323 * 24 14 13 38 38 H 1.09004 * 109.58677 * 293.57385 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6231 -2.5567 -0.8896 11 6 2.2450 -3.6628 -0.0005 12 6 1.4811 -4.9885 -0.0337 13 6 0.6059 -5.1003 1.2186 14 7 -0.2527 -3.9110 1.3032 15 6 -1.5892 -4.0361 1.4248 16 8 -2.1090 -5.1295 1.3204 17 6 -2.4252 -2.8395 1.6798 18 6 -3.8099 -2.9373 1.6010 19 6 -4.5818 -1.8015 1.8433 20 7 -5.9710 -1.8551 1.7744 21 6 -3.9272 -0.6108 2.1553 22 6 -2.5463 -0.5942 2.2144 23 7 -1.8449 -1.6846 1.9861 24 6 0.3726 -2.5827 1.2465 25 1 -0.4851 0.8400 -0.0004 26 1 2.8563 -3.6183 0.9009 27 1 2.8871 -3.5917 -0.8785 28 1 2.1898 -5.8163 -0.0572 29 1 0.8509 -5.0230 -0.9223 30 1 1.2396 -5.1570 2.1036 31 1 -0.0139 -5.9946 1.1551 32 1 -4.2801 -3.8779 1.3551 33 1 -6.4139 -2.6898 1.5552 34 1 -6.4962 -1.0577 1.9448 35 1 -4.4929 0.2887 2.3485 36 1 -2.0353 0.3261 2.4561 37 1 -0.4009 -1.8163 1.1988 38 1 0.9871 -2.4299 2.1338 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348862192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:14 Heat of formation + Delta-G solvation = -7.534406 kcal Electronic energy + Delta-G solvation = -21876.487996 eV Core-core repulsion = 18718.147168 eV Total energy + Delta-G solvation = -3158.340828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67107 -40.14725 -38.32422 -36.34619 -34.97965 -33.60655 -32.24092 -31.39792 -30.55153 -27.00784 -26.64592 -24.73692 -23.94065 -23.21079 -21.61194 -20.24479 -18.66766 -18.20896 -18.15742 -17.28934 -16.73693 -16.46999 -16.30661 -16.18275 -15.48894 -15.33937 -14.90861 -14.72413 -14.62608 -14.41839 -14.07151 -13.69649 -13.42595 -12.82617 -12.78076 -12.62172 -12.41255 -12.19496 -12.11946 -11.79038 -11.64363 -11.24806 -11.09356 -10.80104 -10.42422 -10.09154 -9.47579 -9.33605 -8.83483 -7.93986 -6.07933 -0.14091 0.63726 1.47447 1.50416 1.60112 1.83920 2.17646 2.52878 2.88912 3.11122 3.29070 3.38378 3.85116 4.08375 4.09832 4.14340 4.32289 4.34875 4.51162 4.63041 4.75704 4.83997 4.88167 4.95037 4.99451 5.05166 5.10467 5.24910 5.34759 5.47705 5.62704 5.67709 5.86194 6.02685 6.38633 6.40414 6.48604 6.77995 6.93806 6.95440 7.06953 7.35291 7.58137 9.09040 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.008252 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.128272 B = 3392.180061 C = 5165.913833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.027 3.973 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.050 0.950 9 C 0.036 3.964 10 H -0.018 1.018 11 C -0.108 4.108 12 C -0.122 4.122 13 C 0.103 3.897 14 N -0.589 5.589 15 C 0.556 3.444 16 O -0.585 6.585 17 C 0.092 3.908 18 C -0.201 4.201 19 C 0.247 3.753 20 N -0.846 5.846 21 C -0.224 4.224 22 C 0.132 3.868 23 N -0.481 5.481 24 C 0.079 3.921 25 H 0.261 0.739 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.097 0.903 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.410 0.590 34 H 0.416 0.584 35 H 0.168 0.832 36 H 0.162 0.838 37 H 0.184 0.816 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.808 -1.327 4.962 11.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.174 4.174 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.068 0.932 9 C 0.017 3.983 10 H 0.000 1.000 11 C -0.146 4.146 12 C -0.160 4.160 13 C -0.019 4.019 14 N -0.317 5.317 15 C 0.344 3.656 16 O -0.468 6.468 17 C -0.045 4.045 18 C -0.228 4.228 19 C 0.131 3.869 20 N -0.387 5.387 21 C -0.249 4.249 22 C -0.025 4.025 23 N -0.196 5.196 24 C -0.041 4.041 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.158 0.842 33 H 0.240 0.760 34 H 0.247 0.753 35 H 0.186 0.814 36 H 0.179 0.821 37 H 0.200 0.800 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.271 -1.765 4.969 10.666 hybrid contribution -0.427 0.823 -0.367 0.997 sum -9.698 -0.943 4.603 10.776 Atomic orbital electron populations 1.70019 1.06304 1.26792 1.49333 1.25611 0.95798 1.01513 0.94516 0.85659 0.78881 0.80417 0.77470 1.20138 1.21183 1.20147 1.21313 0.92724 0.91479 1.52394 0.93212 1.18893 0.93028 0.93333 0.93084 0.99981 1.21571 0.98022 0.94486 1.00539 1.21853 0.98612 0.98731 0.96762 1.21763 0.93091 0.88160 0.98884 1.48519 1.05446 1.09944 1.67832 1.18450 0.82574 0.87749 0.76831 1.90616 1.73398 1.27884 1.54896 1.20800 0.91775 0.92294 0.99582 1.21440 0.92815 0.99823 1.08724 1.17812 0.86109 0.92439 0.90502 1.42219 1.01193 1.16489 1.78767 1.21973 0.95496 0.98512 1.08920 1.22839 0.91320 0.96284 0.92095 1.67695 1.38797 0.98995 1.14089 1.23427 1.01242 0.83242 0.96209 0.92926 0.92783 0.93218 0.88418 0.93660 0.90524 0.89782 0.84209 0.75950 0.75278 0.81436 0.82110 0.80033 0.95917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.54 11.39 21.45 0.24 -47.30 16 2 C 0.03 1.44 5.30 84.65 0.45 1.89 16 3 Si 0.95 42.23 29.54 68.60 2.03 44.25 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.54 -29.60 8.56 25.60 0.22 -29.38 16 8 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 9 C 0.04 1.85 2.24 -11.61 -0.03 1.83 16 10 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 11 C -0.11 -4.64 5.11 30.62 0.16 -4.48 16 12 C -0.12 -4.45 6.08 30.67 0.19 -4.26 16 13 C 0.10 3.94 6.45 86.36 0.56 4.50 16 14 N -0.59 -26.68 2.98 -822.74 -2.45 -29.13 16 15 C 0.56 25.34 7.65 86.89 0.66 26.01 16 16 O -0.59 -27.37 15.79 -3.77 -0.06 -27.43 16 17 C 0.09 3.83 6.56 41.83 0.27 4.11 16 18 C -0.20 -6.78 9.52 22.75 0.22 -6.57 16 19 C 0.25 6.42 6.81 38.55 0.26 6.68 16 20 N -0.85 -13.37 9.08 -51.03 -0.46 -13.84 16 21 C -0.22 -5.82 10.00 22.55 0.23 -5.60 16 22 C 0.13 4.50 11.17 84.72 0.95 5.44 16 23 N -0.48 -20.16 6.15 -185.21 -1.14 -21.30 16 24 C 0.08 3.94 4.81 86.22 0.42 4.36 16 25 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 26 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.08 3.12 7.00 -2.39 -0.02 3.11 16 32 H 0.14 4.49 7.67 -2.91 -0.02 4.46 16 33 H 0.41 5.27 8.86 -92.70 -0.82 4.45 16 34 H 0.42 4.20 8.86 -92.71 -0.82 3.38 16 35 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.16 5.08 8.06 -2.91 -0.02 5.06 16 37 H 0.18 9.33 2.16 -62.70 -0.14 9.20 16 38 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -67.68 310.22 2.03 -65.64 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.67 Total: 24.57 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 4.55 Total: 4.52 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -3.81 Total: -111.56 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.06 Total: -27.43 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -67.68 2.03 -65.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348862192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.110 kcal (2) G-P(sol) polarization free energy of solvation -67.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds