Wall clock time and date at job start Mon Mar 30 2020 02:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86806 * 120.00116 * 2 1 4 4 H 1.48497 * 109.47122 * 270.00492 * 3 2 1 5 5 H 1.48503 * 109.46826 * 30.00210 * 3 2 1 6 6 H 1.48492 * 109.47252 * 150.00269 * 3 2 1 7 7 C 1.40024 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.41333 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.40619 * 119.78923 * 179.97438 * 9 7 2 11 11 C 1.38298 * 119.12918 * 179.97438 * 10 9 7 12 12 C 1.38703 * 118.67156 * 359.74856 * 11 10 9 13 13 C 1.39638 * 119.49221 * 0.51658 * 12 11 10 14 14 N 1.39268 * 119.57188 * 179.74551 * 13 12 11 15 15 C 1.34777 * 119.99619 * 185.39342 * 14 13 12 16 16 O 1.21274 * 120.00257 * 354.86309 * 15 14 13 17 17 C 1.50699 * 119.99857 * 174.86145 * 15 14 13 18 18 C 1.53005 * 109.47297 * 180.02562 * 17 15 14 19 19 H 1.08996 * 110.62804 * 54.29401 * 18 17 15 20 20 C 1.55133 * 110.85745 * 177.51077 * 18 17 15 21 21 C 1.54907 * 101.65553 * 154.10581 * 20 18 17 22 22 N 1.47840 * 104.79287 * 322.92693 * 21 20 18 23 23 C 1.47447 * 108.56906 * 24.09416 * 22 21 20 24 24 N 1.31932 * 120.85001 * 359.47547 * 13 12 11 25 25 H 0.97003 * 120.00313 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.43218 * 359.97438 * 10 9 7 27 27 H 1.07997 * 120.67022 * 180.02562 * 11 10 9 28 28 H 1.08000 * 120.25623 * 180.26549 * 12 11 10 29 29 H 0.96993 * 120.00043 * 5.39024 * 14 13 12 30 30 H 1.08994 * 109.47568 * 59.99886 * 17 15 14 31 31 H 1.09001 * 109.47358 * 300.00006 * 17 15 14 32 32 H 1.09005 * 110.99074 * 272.19666 * 20 18 17 33 33 H 1.08996 * 110.99400 * 36.00928 * 20 18 17 34 34 H 1.09000 * 110.37356 * 204.09841 * 21 20 18 35 35 H 1.08997 * 110.46930 * 81.80818 * 21 20 18 36 36 H 1.00906 * 110.99972 * 261.82636 * 22 21 20 37 37 H 1.08998 * 109.88661 * 239.60159 * 23 22 21 38 38 H 1.09002 * 109.88256 * 118.41156 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4888 2.0465 -1.4000 5 1 1.4389 2.6527 0.7001 6 1 3.5390 1.4402 0.6999 7 6 2.0075 -1.2126 -0.0005 8 1 3.0876 -1.2125 -0.0010 9 6 1.3009 -2.4366 -0.0005 10 6 2.0085 -3.6518 -0.0016 11 6 1.3033 -4.8415 -0.0011 12 6 -0.0829 -4.7934 0.0059 13 6 -0.7278 -3.5549 0.0012 14 7 -2.1196 -3.5047 0.0027 15 6 -2.7512 -2.3196 -0.1115 16 8 -2.1110 -1.2897 -0.1218 17 6 -4.2532 -2.2743 -0.2263 18 6 -4.7121 -0.8194 -0.3435 19 1 -4.1994 -0.3201 -1.1656 20 6 -6.2505 -0.7386 -0.5264 21 6 -6.5599 0.6682 0.0436 22 7 -5.6385 0.8222 1.1895 23 6 -4.4796 -0.0656 0.9827 24 7 -0.0357 -2.4317 0.0005 25 1 -0.4851 0.8400 0.0004 26 1 3.0885 -3.6560 -0.0029 27 1 1.8215 -5.7890 -0.0015 28 1 -0.6590 -5.7069 0.0108 29 1 -2.6343 -4.3226 0.0860 30 1 -4.6992 -2.7261 0.6597 31 1 -4.5666 -2.8263 -1.1125 32 1 -6.5223 -0.8013 -1.5802 33 1 -6.7537 -1.5135 0.0518 34 1 -7.5955 0.7222 0.3794 35 1 -6.3644 1.4347 -0.7062 36 1 -6.1048 0.6115 2.0592 37 1 -4.4057 -0.7766 1.8056 38 1 -3.5664 0.5260 0.9178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349892995.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:02 Heat of formation + Delta-G solvation = 19.224574 kcal Electronic energy + Delta-G solvation = -21358.429546 eV Core-core repulsion = 18201.249074 eV Total energy + Delta-G solvation = -3157.180472 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.54136 -38.37463 -37.16656 -34.08174 -32.96270 -31.99685 -30.28041 -29.29414 -28.90795 -26.27793 -25.31239 -22.09607 -21.50857 -21.18702 -20.04206 -19.09495 -17.68270 -16.40849 -16.16592 -15.93751 -15.55082 -14.64552 -14.43030 -14.35891 -13.63807 -13.50256 -13.35638 -12.91598 -12.76593 -12.28197 -12.18084 -11.95855 -11.64872 -11.38491 -11.12373 -11.04418 -10.91529 -10.69987 -10.62869 -10.52416 -10.44993 -9.91251 -9.63236 -8.99264 -8.89360 -8.36477 -7.94415 -7.18020 -6.93803 -6.11484 -4.37846 2.80298 3.09619 3.20072 3.22011 3.28795 3.77941 3.86258 4.08816 4.32260 4.71976 4.79699 4.94641 5.03361 5.31551 5.35753 5.47577 5.61179 5.65469 5.75676 5.88819 5.93342 6.00961 6.07534 6.14266 6.43927 6.50760 6.60169 6.71810 6.85536 6.86956 6.94566 7.26716 7.44494 7.57469 7.65221 7.83042 8.09622 8.22563 8.49943 8.76901 9.07384 9.31651 10.27022 10.50472 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.015508 B = 0.006452 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.058144 B = 4338.925092 C = 5976.587005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.653 5.653 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.082 0.918 9 C 0.270 3.730 10 C -0.306 4.306 11 C -0.037 4.037 12 C -0.359 4.359 13 C 0.371 3.629 14 N -0.669 5.669 15 C 0.465 3.535 16 O -0.404 6.404 17 C -0.130 4.130 18 C -0.087 4.087 19 H 0.090 0.910 20 C -0.152 4.152 21 C 0.048 3.952 22 N -0.689 5.689 23 C 0.058 3.942 24 N -0.472 5.472 25 H 0.272 0.728 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.397 0.603 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.332 0.668 37 H 0.047 0.953 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.447 -2.114 0.131 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.272 5.272 2 C -0.171 4.171 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.385 4.385 13 C 0.133 3.867 14 N -0.317 5.317 15 C 0.247 3.753 16 O -0.267 6.267 17 C -0.171 4.171 18 C -0.107 4.107 19 H 0.108 0.892 20 C -0.191 4.191 21 C -0.081 4.081 22 N -0.317 5.317 23 C -0.071 4.071 24 N -0.191 5.191 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.230 0.770 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.147 0.853 37 H 0.065 0.935 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.314 0.314 -0.122 12.318 hybrid contribution 0.138 -1.721 0.191 1.737 sum -12.175 -1.407 0.069 12.257 Atomic orbital electron populations 1.70309 1.05693 1.27413 1.23763 1.26160 0.95152 1.00506 0.95301 0.86539 0.80568 0.81988 0.79011 1.19701 1.20247 1.18807 1.19577 0.94041 0.89393 1.42546 0.90029 1.18396 0.87245 0.91928 0.87900 1.21622 0.98527 0.93570 1.19204 1.20555 0.93215 0.96491 0.95841 1.20499 0.94800 0.94984 1.28230 1.18652 0.83463 0.90895 0.93727 1.43480 1.05056 1.09398 1.73728 1.20762 0.89351 0.84961 0.80234 1.91143 1.65424 1.30611 1.39496 1.21720 0.94403 0.97896 1.03062 1.22095 0.94311 0.94470 0.99802 0.89204 1.23213 0.96122 0.98043 1.01691 1.22839 0.95412 0.95875 0.94017 1.61783 1.09298 1.56054 1.04515 1.22695 0.94653 0.94133 0.95574 1.68714 1.06934 1.23185 1.20315 0.91570 0.88634 0.88720 0.89217 0.76975 0.90131 0.89769 0.90859 0.91600 0.91945 0.90644 0.85270 0.93454 0.89051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.01 9.00 55.55 0.50 -17.51 16 2 C 0.06 1.54 5.50 -17.35 -0.10 1.44 16 3 Si 0.89 19.47 29.56 -169.99 -5.02 14.44 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.43 -11.78 9.14 -37.74 -0.34 -12.12 16 8 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 9 C 0.27 7.65 6.55 -85.00 -0.56 7.10 16 10 C -0.31 -7.80 9.83 -38.66 -0.38 -8.18 16 11 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 12 C -0.36 -8.14 9.96 -38.89 -0.39 -8.53 16 13 C 0.37 9.08 7.43 -154.97 -1.15 7.93 16 14 N -0.67 -13.01 5.38 -11.40 -0.06 -13.08 16 15 C 0.47 9.01 7.59 -10.99 -0.08 8.93 16 16 O -0.40 -9.69 10.76 5.56 0.06 -9.63 16 17 C -0.13 -1.75 5.11 -27.88 -0.14 -1.89 16 18 C -0.09 -1.20 2.52 -88.80 -0.22 -1.43 16 19 H 0.09 1.46 7.97 -51.93 -0.41 1.05 16 20 C -0.15 -1.60 6.53 -24.60 -0.16 -1.76 16 21 C 0.05 0.52 7.57 -2.30 -0.02 0.50 16 22 N -0.69 -8.95 7.39 -110.79 -0.82 -9.77 16 23 C 0.06 0.88 6.29 -2.83 -0.02 0.86 16 24 N -0.47 -13.26 5.74 -10.25 -0.06 -13.32 16 25 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 26 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 27 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.40 5.92 8.70 -40.82 -0.36 5.57 16 30 H 0.08 0.92 8.00 -51.93 -0.42 0.51 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.62 8.05 -51.93 -0.42 0.20 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.33 3.67 8.91 -39.29 -0.35 3.32 16 37 H 0.05 0.70 7.73 -51.93 -0.40 0.30 16 38 H 0.09 1.72 7.76 -51.93 -0.40 1.32 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -32.20 313.32 -9.91 -42.10 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.26 Total: 10.43 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.96 Total: -8.39 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.44 Total: -53.67 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.06 Total: -9.63 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.20 -9.91 -42.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349892995.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.326 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds