Wall clock time and date at job start Mon Mar 30 2020 02:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86800 * 120.00026 * 2 1 4 4 H 1.48501 * 109.46866 * 269.99710 * 3 2 1 5 5 H 1.48496 * 109.47327 * 29.99812 * 3 2 1 6 6 H 1.48500 * 109.47059 * 150.00197 * 3 2 1 7 7 C 1.40034 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.41336 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.40611 * 119.78455 * 179.97438 * 9 7 2 11 11 C 1.38307 * 119.12496 * 180.02562 * 10 9 7 12 12 C 1.38697 * 118.67052 * 0.02562 * 11 10 9 13 13 C 1.39625 * 119.49487 * 359.97438 * 12 11 10 14 14 N 1.39276 * 119.57165 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99806 * 185.31454 * 14 13 12 16 16 O 1.21272 * 120.00092 * 354.85281 * 15 14 13 17 17 C 1.50705 * 119.99754 * 174.85262 * 15 14 13 18 18 H 1.08998 * 109.46396 * 39.97752 * 17 15 14 19 19 C 1.53046 * 109.45991 * 279.99919 * 17 15 14 20 20 C 1.53114 * 109.27726 * 180.81732 * 19 17 15 21 21 C 1.53118 * 109.16176 * 57.65316 * 20 19 17 22 22 C 1.53044 * 109.27975 * 302.34641 * 21 20 19 23 23 N 1.46843 * 109.52034 * 59.17997 * 22 21 20 24 24 N 1.31926 * 120.85523 * 0.26051 * 13 12 11 25 25 H 0.97002 * 119.99591 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.44089 * 0.04591 * 10 9 7 27 27 H 1.08005 * 120.66619 * 179.97438 * 11 10 9 28 28 H 1.08004 * 120.24544 * 179.97438 * 12 11 10 29 29 H 0.97000 * 119.99713 * 5.31542 * 14 13 12 30 30 H 1.09002 * 109.49879 * 300.75870 * 19 17 15 31 31 H 1.09001 * 109.50148 * 60.87176 * 19 17 15 32 32 H 1.08999 * 109.52252 * 177.55658 * 20 19 17 33 33 H 1.08997 * 109.52282 * 297.75132 * 20 19 17 34 34 H 1.09000 * 109.50876 * 182.40664 * 21 20 19 35 35 H 1.09004 * 109.53893 * 62.30451 * 21 20 19 36 36 H 1.09001 * 109.45910 * 299.16262 * 22 21 20 37 37 H 1.08999 * 109.46170 * 179.19598 * 22 21 20 38 38 H 1.00894 * 111.00835 * 62.35885 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4401 0.7000 7 6 2.0076 -1.2128 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3009 -2.4367 0.0005 10 6 2.0084 -3.6518 0.0005 11 6 1.3031 -4.8415 0.0000 12 6 -0.0831 -4.7933 -0.0011 13 6 -0.7278 -3.5549 -0.0010 14 7 -2.1197 -3.5046 -0.0026 15 6 -2.7510 -2.3187 -0.1107 16 8 -2.1107 -1.2888 -0.1126 17 6 -4.2527 -2.2727 -0.2293 18 1 -4.6925 -3.0149 0.4368 19 6 -4.6597 -2.5778 -1.6727 20 6 -6.1846 -2.5099 -1.7930 21 6 -6.6622 -1.1232 -1.3529 22 6 -6.1970 -0.8602 0.0812 23 7 -4.7319 -0.9355 0.1434 24 7 -0.0357 -2.4317 -0.0051 25 1 -0.4849 0.8401 -0.0004 26 1 3.0884 -3.6561 0.0013 27 1 1.8213 -5.7892 -0.0004 28 1 -0.6592 -5.7069 -0.0019 29 1 -2.6346 -4.3230 0.0740 30 1 -4.2089 -1.8440 -2.3408 31 1 -4.3174 -3.5765 -1.9440 32 1 -6.4764 -2.6838 -2.8287 33 1 -6.6347 -3.2697 -1.1542 34 1 -7.7506 -1.0825 -1.3957 35 1 -6.2434 -0.3660 -2.0159 36 1 -6.6279 -1.6091 0.7458 37 1 -6.5232 0.1322 0.3925 38 1 -4.3083 -0.2254 -0.4347 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349893285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:22 Heat of formation + Delta-G solvation = 15.981145 kcal Electronic energy + Delta-G solvation = -21485.403650 eV Core-core repulsion = 18328.082533 eV Total energy + Delta-G solvation = -3157.321118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.74538 -38.31193 -36.90319 -34.05849 -32.97037 -31.68833 -31.15290 -30.24463 -28.87752 -25.61185 -24.33377 -23.20022 -21.80018 -21.11039 -20.36178 -19.26669 -17.77505 -16.51774 -16.14814 -15.04264 -14.95222 -14.69128 -14.46462 -14.36238 -14.06311 -13.81899 -13.43494 -13.09191 -12.80497 -12.49645 -12.20987 -11.88444 -11.75097 -11.50178 -11.22915 -11.07853 -10.92580 -10.88175 -10.62518 -10.61007 -10.43716 -9.89946 -9.61830 -8.97579 -8.88994 -8.17536 -7.92770 -7.15046 -6.91960 -6.09773 -4.36328 2.81674 3.10612 3.20031 3.22400 3.29782 3.73174 3.77508 4.09604 4.52264 4.71575 4.82840 4.91846 4.96124 5.13935 5.30331 5.37829 5.42561 5.63874 5.72442 5.84491 5.91322 5.93504 6.03749 6.08223 6.14864 6.21945 6.52231 6.71388 6.86147 6.88452 7.10104 7.27845 7.54373 7.59785 7.67302 7.84659 8.11415 8.24512 8.51469 8.78599 9.08861 9.34061 10.28865 10.52249 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.006175 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.450044 B = 4533.176737 C = 5913.107926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.653 5.653 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.426 4.426 8 H 0.082 0.918 9 C 0.270 3.730 10 C -0.306 4.306 11 C -0.037 4.037 12 C -0.358 4.358 13 C 0.373 3.627 14 N -0.666 5.666 15 C 0.476 3.524 16 O -0.399 6.399 17 C 0.074 3.926 18 H 0.091 0.909 19 C -0.146 4.146 20 C -0.116 4.116 21 C -0.161 4.161 22 C 0.060 3.940 23 N -0.666 5.666 24 N -0.473 5.473 25 H 0.273 0.727 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.090 0.910 29 H 0.397 0.603 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.568 -2.941 -2.229 13.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.272 5.272 2 C -0.172 4.172 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.145 3.855 10 C -0.329 4.329 11 C -0.061 4.061 12 C -0.384 4.384 13 C 0.134 3.866 14 N -0.314 5.314 15 C 0.257 3.743 16 O -0.261 6.261 17 C -0.040 4.040 18 H 0.109 0.891 19 C -0.186 4.186 20 C -0.154 4.154 21 C -0.200 4.200 22 C -0.070 4.070 23 N -0.297 5.297 24 N -0.192 5.192 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.230 0.770 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.730 -1.229 -1.560 12.884 hybrid contribution 0.337 -0.742 -0.978 1.273 sum -12.393 -1.971 -2.538 12.803 Atomic orbital electron populations 1.70319 1.05680 1.27420 1.23734 1.26177 0.95146 1.00524 0.95344 0.86528 0.80567 0.81985 0.78941 1.19744 1.20295 1.18797 1.19577 0.94034 0.89397 1.42606 0.90021 1.18397 0.87231 0.91943 0.87890 1.21619 0.98515 0.93562 1.19221 1.20555 0.93203 0.96487 0.95840 1.20491 0.94793 0.94966 1.28183 1.18625 0.83347 0.90898 0.93707 1.43408 1.05027 1.09159 1.73785 1.20504 0.88651 0.85040 0.80135 1.91129 1.64948 1.30749 1.39240 1.21502 0.93992 0.93092 0.95407 0.89112 1.22163 0.96134 1.03002 0.97285 1.21543 0.95361 0.97192 1.01277 1.22309 1.01086 0.97588 0.99022 1.22029 0.88109 1.02153 0.94713 1.60328 1.05453 1.03982 1.59925 1.68713 1.06950 1.23215 1.20317 0.91561 0.88635 0.88705 0.89169 0.76978 0.91282 0.91018 0.91940 0.91829 0.91660 0.91907 0.91123 0.90601 0.82555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -18.21 8.99 55.55 0.50 -17.71 16 2 C 0.06 1.53 5.50 -17.34 -0.10 1.43 16 3 Si 0.90 19.48 29.56 -169.99 -5.02 14.46 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.26 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.43 -11.86 9.14 -37.73 -0.34 -12.20 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.27 7.71 6.55 -85.00 -0.56 7.15 16 10 C -0.31 -7.83 9.83 -38.66 -0.38 -8.21 16 11 C -0.04 -0.85 10.15 -39.39 -0.40 -1.25 16 12 C -0.36 -8.16 9.95 -38.89 -0.39 -8.55 16 13 C 0.37 9.21 7.43 -154.97 -1.15 8.06 16 14 N -0.67 -13.23 5.38 -11.40 -0.06 -13.29 16 15 C 0.48 9.59 7.03 -10.98 -0.08 9.52 16 16 O -0.40 -9.96 11.96 5.56 0.07 -9.89 16 17 C 0.07 1.09 2.83 -68.87 -0.19 0.89 16 18 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 19 C -0.15 -1.83 5.34 -26.65 -0.14 -1.98 16 20 C -0.12 -1.15 6.00 -26.61 -0.16 -1.31 16 21 C -0.16 -1.55 6.08 -26.65 -0.16 -1.72 16 22 C 0.06 0.66 6.55 -3.83 -0.03 0.63 16 23 N -0.67 -9.79 6.28 -107.98 -0.68 -10.47 16 24 N -0.47 -13.42 5.74 -10.26 -0.06 -13.47 16 25 H 0.27 7.13 8.29 -40.82 -0.34 6.79 16 26 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 27 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 28 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 29 H 0.40 6.10 8.70 -40.82 -0.36 5.75 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.35 5.65 8.31 -39.30 -0.33 5.32 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -32.28 312.22 -9.93 -42.21 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.30 Total: 10.98 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -4.08 Total: -7.53 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.30 Total: -54.94 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.28 -9.93 -42.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349893285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.192 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds