Wall clock time and date at job start Mon Mar 30 2020 02:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86800 * 120.00026 * 2 1 4 4 H 1.48501 * 109.46866 * 269.99710 * 3 2 1 5 5 H 1.48496 * 109.47327 * 29.99812 * 3 2 1 6 6 H 1.48500 * 109.47059 * 150.00197 * 3 2 1 7 7 C 1.40034 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.41336 * 119.99900 * 0.02562 * 7 2 1 10 10 C 1.40611 * 119.78455 * 179.97438 * 9 7 2 11 11 C 1.38307 * 119.12496 * 180.02562 * 10 9 7 12 12 C 1.38697 * 118.67052 * 0.02562 * 11 10 9 13 13 C 1.39625 * 119.49487 * 359.97438 * 12 11 10 14 14 N 1.39276 * 119.57165 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99806 * 185.31454 * 14 13 12 16 16 O 1.21272 * 120.00092 * 354.85281 * 15 14 13 17 17 C 1.50705 * 119.99754 * 174.85262 * 15 14 13 18 18 H 1.08998 * 109.46396 * 39.97752 * 17 15 14 19 19 C 1.53046 * 109.45991 * 279.99919 * 17 15 14 20 20 C 1.53114 * 109.27726 * 180.81732 * 19 17 15 21 21 C 1.53118 * 109.16176 * 57.65316 * 20 19 17 22 22 C 1.53044 * 109.27975 * 302.34641 * 21 20 19 23 23 N 1.46843 * 109.52034 * 59.17997 * 22 21 20 24 24 N 1.31926 * 120.85523 * 0.26051 * 13 12 11 25 25 H 0.97002 * 119.99591 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.44089 * 0.04591 * 10 9 7 27 27 H 1.08005 * 120.66619 * 179.97438 * 11 10 9 28 28 H 1.08004 * 120.24544 * 179.97438 * 12 11 10 29 29 H 0.97000 * 119.99713 * 5.31542 * 14 13 12 30 30 H 1.09002 * 109.49879 * 300.75870 * 19 17 15 31 31 H 1.09001 * 109.50148 * 60.87176 * 19 17 15 32 32 H 1.08999 * 109.52252 * 177.55658 * 20 19 17 33 33 H 1.08997 * 109.52282 * 297.75132 * 20 19 17 34 34 H 1.09000 * 109.50876 * 182.40664 * 21 20 19 35 35 H 1.09004 * 109.53893 * 62.30451 * 21 20 19 36 36 H 1.09001 * 109.45910 * 299.16262 * 22 21 20 37 37 H 1.08999 * 109.46170 * 179.19598 * 22 21 20 38 38 H 1.00894 * 111.00835 * 62.35885 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4390 2.6527 0.7000 6 1 3.5391 1.4401 0.7000 7 6 2.0076 -1.2128 0.0005 8 1 3.0876 -1.2127 0.0001 9 6 1.3009 -2.4367 0.0005 10 6 2.0084 -3.6518 0.0005 11 6 1.3031 -4.8415 0.0000 12 6 -0.0831 -4.7933 -0.0011 13 6 -0.7278 -3.5549 -0.0010 14 7 -2.1197 -3.5046 -0.0026 15 6 -2.7510 -2.3187 -0.1107 16 8 -2.1107 -1.2888 -0.1126 17 6 -4.2527 -2.2727 -0.2293 18 1 -4.6925 -3.0149 0.4368 19 6 -4.6597 -2.5778 -1.6727 20 6 -6.1846 -2.5099 -1.7930 21 6 -6.6622 -1.1232 -1.3529 22 6 -6.1970 -0.8602 0.0812 23 7 -4.7319 -0.9355 0.1434 24 7 -0.0357 -2.4317 -0.0051 25 1 -0.4849 0.8401 -0.0004 26 1 3.0884 -3.6561 0.0013 27 1 1.8213 -5.7892 -0.0004 28 1 -0.6592 -5.7069 -0.0019 29 1 -2.6346 -4.3230 0.0740 30 1 -4.2089 -1.8440 -2.3408 31 1 -4.3174 -3.5765 -1.9440 32 1 -6.4764 -2.6838 -2.8287 33 1 -6.6347 -3.2697 -1.1542 34 1 -7.7506 -1.0825 -1.3957 35 1 -6.2434 -0.3660 -2.0159 36 1 -6.6279 -1.6091 0.7458 37 1 -6.5232 0.1322 0.3925 38 1 -4.3083 -0.2254 -0.4347 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349893285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:22 Heat of formation + Delta-G solvation = -5.988062 kcal Electronic energy + Delta-G solvation = -21486.356307 eV Core-core repulsion = 18328.082533 eV Total energy + Delta-G solvation = -3158.273774 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21350 -39.86237 -38.40907 -35.88622 -34.82235 -32.66530 -32.38323 -32.09992 -30.66185 -27.51737 -25.65403 -24.14309 -23.54255 -22.88605 -21.32971 -20.85990 -19.58922 -18.08509 -17.85367 -16.53414 -16.27390 -16.15104 -16.01197 -15.64347 -15.40541 -15.31448 -14.88376 -14.68890 -14.26625 -13.95040 -13.62641 -13.47362 -13.00210 -12.83992 -12.72169 -12.55859 -12.48136 -12.30706 -12.18777 -11.77526 -11.73217 -11.50305 -11.45102 -10.83957 -10.51323 -9.88106 -9.29757 -8.99957 -8.79209 -8.03240 -6.40766 0.93780 1.26756 1.39719 1.51596 1.53956 2.17039 2.27023 2.28803 3.00633 3.39967 3.72961 3.87163 3.96819 4.08159 4.17432 4.23787 4.30318 4.41473 4.51899 4.75696 4.77250 4.86026 4.90813 4.96153 4.96922 5.08159 5.09431 5.11156 5.17133 5.30694 5.37567 5.69415 5.87668 5.93843 6.06152 6.18511 6.36665 6.39955 6.77467 6.88036 7.09908 7.75599 8.37092 8.58378 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.017318 B = 0.006175 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.450044 B = 4533.176737 C = 5913.107926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.687 5.687 2 C 0.011 3.989 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.467 4.467 8 H 0.084 0.916 9 C 0.236 3.764 10 C -0.331 4.331 11 C -0.035 4.035 12 C -0.347 4.347 13 C 0.349 3.651 14 N -0.655 5.655 15 C 0.465 3.535 16 O -0.452 6.452 17 C 0.090 3.910 18 H 0.116 0.884 19 C -0.140 4.140 20 C -0.110 4.110 21 C -0.156 4.156 22 C 0.060 3.940 23 N -0.687 5.687 24 N -0.507 5.507 25 H 0.270 0.730 26 H 0.103 0.897 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.419 0.581 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.314 -4.393 -2.319 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.306 5.306 2 C -0.215 4.215 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.498 4.498 8 H 0.103 0.897 9 C 0.110 3.890 10 C -0.354 4.354 11 C -0.059 4.059 12 C -0.373 4.373 13 C 0.110 3.890 14 N -0.305 5.305 15 C 0.248 3.752 16 O -0.317 6.317 17 C -0.024 4.024 18 H 0.134 0.866 19 C -0.180 4.180 20 C -0.147 4.147 21 C -0.195 4.195 22 C -0.069 4.069 23 N -0.317 5.317 24 N -0.227 5.227 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.256 0.744 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.527 -2.746 -1.647 14.876 hybrid contribution 0.811 -0.474 -0.939 1.328 sum -13.716 -3.220 -2.586 14.324 Atomic orbital electron populations 1.70520 1.07170 1.27979 1.24947 1.27027 0.96051 1.03915 0.94510 0.85339 0.79119 0.76930 0.79093 1.19106 1.19827 1.18010 1.19895 0.94399 0.90523 1.44984 0.89746 1.18893 0.88064 0.93374 0.88643 1.21801 0.99152 0.93899 1.20563 1.21034 0.93613 0.97280 0.93975 1.20984 0.95180 0.95790 1.25310 1.19182 0.85319 0.91052 0.93418 1.43417 1.03482 1.10510 1.73061 1.21595 0.90975 0.84220 0.78370 1.91123 1.66694 1.32498 1.41365 1.21399 0.89627 0.93940 0.97401 0.86588 1.22113 0.98331 1.02517 0.95016 1.21536 0.92817 0.97796 1.02548 1.22259 1.02431 0.97179 0.97639 1.22134 0.85648 1.03092 0.96005 1.60358 1.07786 1.03540 1.60048 1.68680 1.07241 1.25411 1.21366 0.91895 0.87882 0.84589 0.85035 0.74387 0.93876 0.90221 0.90734 0.89920 0.89252 0.93065 0.89807 0.89978 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -40.28 8.99 21.84 0.20 -40.08 16 2 C 0.01 0.59 5.50 85.29 0.47 1.06 16 3 Si 0.97 41.60 29.56 68.60 2.03 43.63 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.47 -27.22 9.14 23.47 0.21 -27.00 16 8 H 0.08 4.61 7.85 -2.91 -0.02 4.59 16 9 C 0.24 13.94 6.55 40.21 0.26 14.20 16 10 C -0.33 -17.13 9.83 22.87 0.22 -16.90 16 11 C -0.03 -1.55 10.15 22.40 0.23 -1.32 16 12 C -0.35 -15.09 9.95 22.71 0.23 -14.86 16 13 C 0.35 17.23 7.43 133.23 0.99 18.22 16 14 N -0.66 -25.59 5.38 -308.38 -1.66 -27.25 16 15 C 0.47 18.95 7.03 87.66 0.62 19.57 16 16 O -0.45 -23.58 11.96 -3.01 -0.04 -23.62 16 17 C 0.09 2.54 2.83 44.20 0.12 2.67 16 18 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 19 C -0.14 -3.31 5.34 30.65 0.16 -3.14 16 20 C -0.11 -1.83 6.00 30.67 0.18 -1.65 16 21 C -0.16 -2.62 6.08 30.65 0.19 -2.43 16 22 C 0.06 1.19 6.55 86.33 0.57 1.76 16 23 N -0.69 -19.95 6.28 -495.54 -3.11 -23.06 16 24 N -0.51 -29.74 5.74 -186.37 -1.07 -30.81 16 25 H 0.27 14.95 8.29 -92.71 -0.77 14.18 16 26 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 27 H 0.14 4.83 8.06 -2.91 -0.02 4.81 16 28 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 29 H 0.42 11.95 8.70 -92.71 -0.81 11.15 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.34 11.31 8.31 -89.70 -0.75 10.56 16 Total: -1.00 -74.42 312.22 0.33 -74.09 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: -0.47 Total: 36.92 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 4.46 Total: -9.83 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -5.64 Total: -121.19 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.04 Total: -23.62 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -74.42 0.33 -74.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349893285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.099 kcal (2) G-P(sol) polarization free energy of solvation -74.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds