Wall clock time and date at job start Mon Mar 30 2020 02:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 120.00154 * 2 1 4 4 H 1.48504 * 109.46980 * 274.98453 * 3 2 1 5 5 H 1.48494 * 109.47084 * 34.98260 * 3 2 1 6 6 H 1.48498 * 109.47235 * 154.98587 * 3 2 1 7 7 C 1.40031 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00040 * 186.28600 * 7 2 1 9 9 C 1.41318 * 119.99952 * 6.28710 * 7 2 1 10 10 C 1.40585 * 119.78336 * 173.66454 * 9 7 2 11 11 C 1.38350 * 119.14900 * 180.02562 * 10 9 7 12 12 C 1.38638 * 118.67829 * 359.74117 * 11 10 9 13 13 C 1.39760 * 119.49009 * 0.50316 * 12 11 10 14 14 N 1.38823 * 119.58127 * 179.76725 * 13 12 11 15 15 C 1.46504 * 120.00581 * 359.72812 * 14 13 12 16 16 H 1.09009 * 108.55955 * 322.93746 * 15 14 13 17 17 C 1.51769 * 108.62059 * 205.00226 * 15 14 13 18 18 C 1.52989 * 110.88059 * 172.02369 * 17 15 14 19 19 N 1.47186 * 108.66422 * 86.45716 * 18 17 15 20 20 C 1.33369 * 120.43844 * 288.02720 * 19 18 17 21 21 O 1.21279 * 119.89943 * 180.31030 * 20 19 18 22 22 C 1.51433 * 120.20840 * 0.30283 * 20 19 18 23 23 C 1.51789 * 108.50331 * 80.80174 * 15 14 13 24 24 N 1.31976 * 120.83277 * 359.48913 * 13 12 11 25 25 H 0.97003 * 119.99950 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.42920 * 0.04029 * 10 9 7 27 27 H 1.08000 * 120.66166 * 180.02562 * 11 10 9 28 28 H 1.07998 * 120.25181 * 180.27395 * 12 11 10 29 29 H 0.97004 * 120.00400 * 179.72565 * 14 13 12 30 30 H 1.09005 * 109.19906 * 51.66093 * 17 15 14 31 31 H 1.09003 * 109.15855 * 292.36382 * 17 15 14 32 32 H 1.09001 * 109.60236 * 326.70344 * 18 17 15 33 33 H 1.09003 * 109.73815 * 206.29230 * 18 17 15 34 34 H 0.97006 * 119.78672 * 107.75302 * 19 18 17 35 35 H 1.09004 * 109.63061 * 311.52140 * 22 20 19 36 36 H 1.08991 * 109.79930 * 191.01937 * 22 20 19 37 37 H 1.09001 * 109.22605 * 308.18820 * 23 15 14 38 38 H 1.09005 * 109.22151 * 67.58273 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3836 2.1072 -1.3948 5 1 1.4956 2.6199 0.8027 6 1 3.5877 1.4120 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0827 -1.2156 0.1019 9 6 1.3073 -2.4328 -0.1351 10 6 2.0211 -3.6365 -0.2693 11 6 1.3223 -4.8233 -0.4007 12 6 -0.0634 -4.7841 -0.3900 13 6 -0.7160 -3.5552 -0.2584 14 7 -2.1035 -3.5133 -0.2522 15 6 -2.8746 -4.7514 -0.3892 16 1 -2.3566 -5.4071 -1.0893 17 6 -4.2386 -4.4121 -0.9616 18 6 -5.0151 -5.6833 -1.3106 19 7 -5.7307 -6.1429 -0.1094 20 6 -5.0622 -6.6853 0.9092 21 8 -5.6624 -7.0659 1.8920 22 6 -3.5561 -6.8279 0.8425 23 6 -2.9310 -5.4360 0.9644 24 7 -0.0296 -2.4348 -0.1344 25 1 -0.4850 0.8401 -0.0004 26 1 3.1012 -3.6349 -0.2696 27 1 1.8460 -5.7621 -0.5050 28 1 -0.6343 -5.6958 -0.4863 29 1 -2.5628 -2.6641 -0.1572 30 1 -4.1101 -3.8119 -1.8624 31 1 -4.8025 -3.8382 -0.2262 32 1 -4.3214 -6.4563 -1.6413 33 1 -5.7314 -5.4709 -2.1043 34 1 -6.6946 -6.0469 -0.0565 35 1 -3.2724 -7.2746 -0.1105 36 1 -3.2084 -7.4585 1.6606 37 1 -1.9202 -5.5302 1.3614 38 1 -3.5298 -4.8329 1.6469 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351354411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:19 Heat of formation + Delta-G solvation = -3.306485 kcal Electronic energy + Delta-G solvation = -21054.855445 eV Core-core repulsion = 17896.697953 eV Total energy + Delta-G solvation = -3158.157492 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29446 -38.44963 -37.00743 -34.97594 -33.45702 -32.30696 -30.92837 -30.25869 -28.51250 -25.60511 -25.43700 -24.03600 -21.64996 -20.96992 -20.19405 -19.64746 -17.53336 -17.33006 -16.81534 -16.23890 -15.26441 -14.90457 -14.70372 -14.46162 -14.16883 -13.86412 -13.51189 -13.37874 -12.89627 -12.68062 -12.51843 -12.16590 -11.91784 -11.76825 -11.45878 -11.29492 -11.02055 -10.95954 -10.69727 -10.53183 -10.40260 -9.94523 -9.81410 -9.48464 -9.27722 -8.92432 -7.93599 -7.52643 -6.55555 -6.35794 -4.48910 2.61379 2.85617 3.10359 3.13854 3.19635 3.21657 3.28085 3.96755 3.99620 4.45330 4.60196 4.77133 4.86940 5.03008 5.16654 5.26845 5.31294 5.40247 5.56729 5.71649 5.91442 5.99110 6.05712 6.13286 6.21760 6.38442 6.58897 6.68268 6.82928 6.87938 6.92864 7.13563 7.23086 7.57432 7.78876 7.89841 8.15047 8.16482 8.34193 8.65010 8.78491 9.09777 10.22424 10.38294 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028756 B = 0.004180 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.481268 B = 6697.226981 C = 7202.848518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.716 5.716 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.435 4.435 8 H 0.083 0.917 9 C 0.293 3.707 10 C -0.316 4.316 11 C -0.032 4.032 12 C -0.368 4.368 13 C 0.412 3.588 14 N -0.736 5.736 15 C 0.166 3.834 16 H 0.074 0.926 17 C -0.150 4.150 18 C 0.113 3.887 19 N -0.726 5.726 20 C 0.520 3.480 21 O -0.558 6.558 22 C -0.136 4.136 23 C -0.129 4.129 24 N -0.532 5.532 25 H 0.269 0.731 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.395 0.605 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.776 -7.246 -4.042 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.338 5.338 2 C -0.153 4.153 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.467 4.467 8 H 0.101 0.899 9 C 0.166 3.834 10 C -0.339 4.339 11 C -0.057 4.057 12 C -0.394 4.394 13 C 0.172 3.828 14 N -0.372 5.372 15 C 0.059 3.941 16 H 0.092 0.908 17 C -0.188 4.188 18 C -0.011 4.011 19 N -0.378 5.378 20 C 0.307 3.693 21 O -0.437 6.437 22 C -0.176 4.176 23 C -0.169 4.169 24 N -0.253 5.253 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.229 0.771 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.234 0.766 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.467 -6.718 -3.477 12.118 hybrid contribution 0.337 0.349 -0.129 0.502 sum -9.131 -6.368 -3.606 11.701 Atomic orbital electron populations 1.70151 1.07167 1.27328 1.29158 1.26039 0.94835 1.00910 0.93502 0.86367 0.80630 0.81143 0.78962 1.19577 1.20248 1.18549 1.19598 0.94591 0.89572 1.42973 0.89881 1.18197 0.86867 0.91778 0.86588 1.21543 0.98443 0.93856 1.20041 1.20604 0.93532 0.96298 0.95234 1.20623 0.94504 0.95894 1.28409 1.18514 0.84244 0.90292 0.89777 1.44276 1.02735 1.07276 1.82879 1.20312 0.90849 0.87570 0.95390 0.90823 1.22097 0.96033 0.98063 1.02655 1.21709 0.96592 0.96169 0.86670 1.45992 1.10924 1.62737 1.18135 1.20707 0.90831 0.75814 0.81931 1.90735 1.70778 1.50074 1.32068 1.21954 0.90877 0.99942 1.04872 1.21832 1.02602 0.93371 0.99069 1.68209 1.07896 1.24276 1.24946 0.91971 0.88761 0.88981 0.89013 0.77070 0.89601 0.90772 0.90184 0.89174 0.76635 0.89248 0.88459 0.89351 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.79 11.49 55.55 0.64 -18.16 16 2 C 0.07 1.83 5.49 -17.34 -0.10 1.73 16 3 Si 0.90 18.57 29.56 -169.99 -5.03 13.54 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.44 -11.68 9.13 -37.74 -0.34 -12.03 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 C 0.29 8.02 6.54 -85.00 -0.56 7.46 16 10 C -0.32 -7.84 9.83 -38.66 -0.38 -8.22 16 11 C -0.03 -0.72 10.15 -39.39 -0.40 -1.12 16 12 C -0.37 -8.00 8.46 -38.87 -0.33 -8.33 16 13 C 0.41 9.53 7.49 -155.32 -1.16 8.37 16 14 N -0.74 -13.58 5.18 -55.12 -0.29 -13.87 16 15 C 0.17 2.25 1.75 -69.17 -0.12 2.13 16 16 H 0.07 1.01 6.26 -51.92 -0.32 0.68 16 17 C -0.15 -1.52 5.13 -27.36 -0.14 -1.66 16 18 C 0.11 0.86 6.47 -3.67 -0.02 0.83 16 19 N -0.73 -6.86 5.27 -59.90 -0.32 -7.18 16 20 C 0.52 6.67 7.06 -11.25 -0.08 6.59 16 21 O -0.56 -9.49 17.92 5.56 0.10 -9.39 16 22 C -0.14 -1.57 5.57 -27.49 -0.15 -1.72 16 23 C -0.13 -1.77 4.91 -27.31 -0.13 -1.90 16 24 N -0.53 -14.31 7.92 -10.33 -0.08 -14.39 16 25 H 0.27 6.41 8.29 -40.82 -0.34 6.07 16 26 H 0.09 2.19 8.06 -52.48 -0.42 1.77 16 27 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.09 1.72 5.88 -52.49 -0.31 1.41 16 29 H 0.39 7.42 8.69 -40.82 -0.35 7.07 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.80 8.05 -51.93 -0.42 0.38 16 32 H 0.08 0.56 6.71 -51.93 -0.35 0.21 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.40 3.28 8.91 -40.82 -0.36 2.92 16 35 H 0.09 0.84 6.77 -51.93 -0.35 0.49 16 36 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.40 7.01 -51.93 -0.36 1.04 16 38 H 0.06 0.96 7.86 -51.93 -0.41 0.55 16 LS Contribution 309.46 15.07 4.66 4.66 Total: -1.00 -31.87 309.46 -9.13 -41.00 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -4.90 Total: 11.65 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -3.92 Total: -7.88 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.05 Total: -53.59 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.10 Total: -9.39 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.87 -9.13 -41.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351354411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.697 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds