Wall clock time and date at job start Mon Mar 30 2020 02:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86799 * 120.00154 * 2 1 4 4 H 1.48504 * 109.46980 * 274.98453 * 3 2 1 5 5 H 1.48494 * 109.47084 * 34.98260 * 3 2 1 6 6 H 1.48498 * 109.47235 * 154.98587 * 3 2 1 7 7 C 1.40031 * 119.99926 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00040 * 186.28600 * 7 2 1 9 9 C 1.41318 * 119.99952 * 6.28710 * 7 2 1 10 10 C 1.40585 * 119.78336 * 173.66454 * 9 7 2 11 11 C 1.38350 * 119.14900 * 180.02562 * 10 9 7 12 12 C 1.38638 * 118.67829 * 359.74117 * 11 10 9 13 13 C 1.39760 * 119.49009 * 0.50316 * 12 11 10 14 14 N 1.38823 * 119.58127 * 179.76725 * 13 12 11 15 15 C 1.46504 * 120.00581 * 359.72812 * 14 13 12 16 16 H 1.09009 * 108.55955 * 322.93746 * 15 14 13 17 17 C 1.51769 * 108.62059 * 205.00226 * 15 14 13 18 18 C 1.52989 * 110.88059 * 172.02369 * 17 15 14 19 19 N 1.47186 * 108.66422 * 86.45716 * 18 17 15 20 20 C 1.33369 * 120.43844 * 288.02720 * 19 18 17 21 21 O 1.21279 * 119.89943 * 180.31030 * 20 19 18 22 22 C 1.51433 * 120.20840 * 0.30283 * 20 19 18 23 23 C 1.51789 * 108.50331 * 80.80174 * 15 14 13 24 24 N 1.31976 * 120.83277 * 359.48913 * 13 12 11 25 25 H 0.97003 * 119.99950 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.42920 * 0.04029 * 10 9 7 27 27 H 1.08000 * 120.66166 * 180.02562 * 11 10 9 28 28 H 1.07998 * 120.25181 * 180.27395 * 12 11 10 29 29 H 0.97004 * 120.00400 * 179.72565 * 14 13 12 30 30 H 1.09005 * 109.19906 * 51.66093 * 17 15 14 31 31 H 1.09003 * 109.15855 * 292.36382 * 17 15 14 32 32 H 1.09001 * 109.60236 * 326.70344 * 18 17 15 33 33 H 1.09003 * 109.73815 * 206.29230 * 18 17 15 34 34 H 0.97006 * 119.78672 * 107.75302 * 19 18 17 35 35 H 1.09004 * 109.63061 * 311.52140 * 22 20 19 36 36 H 1.08991 * 109.79930 * 191.01937 * 22 20 19 37 37 H 1.09001 * 109.22605 * 308.18820 * 23 15 14 38 38 H 1.09005 * 109.22151 * 67.58273 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3836 2.1072 -1.3948 5 1 1.4956 2.6199 0.8027 6 1 3.5877 1.4120 0.5920 7 6 2.0076 -1.2127 -0.0005 8 1 3.0827 -1.2156 0.1019 9 6 1.3073 -2.4328 -0.1351 10 6 2.0211 -3.6365 -0.2693 11 6 1.3223 -4.8233 -0.4007 12 6 -0.0634 -4.7841 -0.3900 13 6 -0.7160 -3.5552 -0.2584 14 7 -2.1035 -3.5133 -0.2522 15 6 -2.8746 -4.7514 -0.3892 16 1 -2.3566 -5.4071 -1.0893 17 6 -4.2386 -4.4121 -0.9616 18 6 -5.0151 -5.6833 -1.3106 19 7 -5.7307 -6.1429 -0.1094 20 6 -5.0622 -6.6853 0.9092 21 8 -5.6624 -7.0659 1.8920 22 6 -3.5561 -6.8279 0.8425 23 6 -2.9310 -5.4360 0.9644 24 7 -0.0296 -2.4348 -0.1344 25 1 -0.4850 0.8401 -0.0004 26 1 3.1012 -3.6349 -0.2696 27 1 1.8460 -5.7621 -0.5050 28 1 -0.6343 -5.6958 -0.4863 29 1 -2.5628 -2.6641 -0.1572 30 1 -4.1101 -3.8119 -1.8624 31 1 -4.8025 -3.8382 -0.2262 32 1 -4.3214 -6.4563 -1.6413 33 1 -5.7314 -5.4709 -2.1043 34 1 -6.6946 -6.0469 -0.0565 35 1 -3.2724 -7.2746 -0.1105 36 1 -3.2084 -7.4585 1.6606 37 1 -1.9202 -5.5302 1.3614 38 1 -3.5298 -4.8329 1.6469 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351354411.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:19 Heat of formation + Delta-G solvation = -25.494461 kcal Electronic energy + Delta-G solvation = -21055.817587 eV Core-core repulsion = 17896.697953 eV Total energy + Delta-G solvation = -3159.119635 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31340 -40.09916 -38.29994 -36.19496 -35.17844 -33.61306 -32.22620 -31.91753 -30.08153 -27.29739 -26.68269 -25.01995 -23.38896 -22.51220 -21.44571 -20.63644 -19.26243 -18.36159 -18.06320 -17.61125 -16.66925 -16.46560 -16.19654 -15.82974 -15.30118 -15.12315 -14.94708 -14.70444 -14.25445 -14.18613 -13.66989 -13.48433 -13.22636 -12.97509 -12.83350 -12.70236 -12.55991 -12.43731 -12.20905 -11.98464 -11.69587 -11.60558 -11.25476 -10.88283 -10.59533 -10.15271 -9.79687 -9.40453 -8.26203 -8.21994 -6.45014 1.08755 1.38911 1.41950 1.55391 1.58517 1.62219 2.25832 2.39542 2.62129 2.94070 3.50376 3.74792 3.88219 4.11600 4.11750 4.23177 4.40300 4.43284 4.43813 4.49280 4.68962 4.79822 4.82652 4.99154 5.03348 5.04477 5.06418 5.16334 5.25549 5.29050 5.42446 5.75917 5.91405 6.01111 6.12083 6.25346 6.26212 6.60502 6.86608 6.98160 7.24576 7.25904 8.37916 8.53336 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.028756 B = 0.004180 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.481268 B = 6697.226981 C = 7202.848518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.029 3.971 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.258 1.258 7 C -0.476 4.476 8 H 0.083 0.917 9 C 0.260 3.740 10 C -0.346 4.346 11 C -0.031 4.031 12 C -0.360 4.360 13 C 0.396 3.604 14 N -0.731 5.731 15 C 0.164 3.836 16 H 0.083 0.917 17 C -0.142 4.142 18 C 0.116 3.884 19 N -0.712 5.712 20 C 0.517 3.483 21 O -0.607 6.607 22 C -0.127 4.127 23 C -0.120 4.120 24 N -0.568 5.568 25 H 0.275 0.725 26 H 0.098 0.902 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.390 0.610 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.406 0.594 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.633 -8.145 -5.516 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.193 4.193 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.508 4.508 8 H 0.101 0.899 9 C 0.133 3.867 10 C -0.369 4.369 11 C -0.055 4.055 12 C -0.386 4.386 13 C 0.155 3.845 14 N -0.365 5.365 15 C 0.058 3.942 16 H 0.101 0.899 17 C -0.181 4.181 18 C -0.007 4.007 19 N -0.362 5.362 20 C 0.304 3.696 21 O -0.490 6.490 22 C -0.168 4.168 23 C -0.160 4.160 24 N -0.290 5.290 25 H 0.086 0.914 26 H 0.116 0.884 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.224 0.776 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.145 0.855 34 H 0.243 0.757 35 H 0.138 0.862 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.366 -7.643 -4.989 13.812 hybrid contribution 0.510 0.503 0.306 0.779 sum -9.856 -7.140 -4.683 13.041 Atomic orbital electron populations 1.70240 1.08686 1.28567 1.30000 1.26897 0.95697 1.04173 0.92515 0.85191 0.79124 0.76155 0.79157 1.18907 1.19383 1.18129 1.19924 0.94929 0.90831 1.45125 0.89859 1.18639 0.87724 0.93016 0.87330 1.21682 0.98880 0.94336 1.22032 1.21032 0.94036 0.96910 0.93553 1.21003 0.94661 0.96622 1.26298 1.18976 0.86032 0.90222 0.89239 1.44517 1.01314 1.08921 1.81730 1.20653 0.92274 0.85692 0.95533 0.89898 1.22054 0.94000 0.99630 1.02455 1.21919 0.97458 0.95019 0.86340 1.45976 1.11481 1.60894 1.17856 1.20896 0.91245 0.75570 0.81862 1.90718 1.71688 1.52478 1.34100 1.21886 0.89975 0.98382 1.06529 1.21666 1.01073 0.94614 0.98604 1.68170 1.08122 1.26356 1.26353 0.91429 0.88366 0.85349 0.85577 0.77595 0.88862 0.91550 0.88504 0.85471 0.75730 0.86196 0.88684 0.91638 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.61 11.49 21.84 0.25 -40.36 16 2 C 0.03 1.49 5.49 85.29 0.47 1.96 16 3 Si 0.98 38.76 29.56 68.60 2.03 40.78 16 4 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.48 -26.52 9.13 23.46 0.21 -26.31 16 8 H 0.08 4.40 7.85 -2.91 -0.02 4.37 16 9 C 0.26 14.73 6.54 40.19 0.26 15.00 16 10 C -0.35 -17.48 9.83 22.87 0.22 -17.26 16 11 C -0.03 -1.35 10.15 22.39 0.23 -1.13 16 12 C -0.36 -15.08 8.46 22.73 0.19 -14.89 16 13 C 0.40 18.33 7.49 133.40 1.00 19.33 16 14 N -0.73 -26.58 5.18 -328.29 -1.70 -28.29 16 15 C 0.16 4.09 1.75 44.19 0.08 4.17 16 16 H 0.08 1.96 6.26 -2.38 -0.01 1.95 16 17 C -0.14 -2.49 5.13 30.19 0.15 -2.33 16 18 C 0.12 1.25 6.47 86.24 0.56 1.81 16 19 N -0.71 -11.33 5.27 -462.61 -2.44 -13.76 16 20 C 0.52 12.29 7.06 88.11 0.62 12.91 16 21 O -0.61 -20.30 17.92 -3.02 -0.05 -20.36 16 22 C -0.13 -2.64 5.57 30.10 0.17 -2.48 16 23 C -0.12 -3.13 4.91 30.22 0.15 -2.98 16 24 N -0.57 -31.34 7.92 -186.59 -1.48 -32.82 16 25 H 0.28 13.41 8.29 -92.71 -0.77 12.64 16 26 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 27 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 28 H 0.13 4.31 5.88 -2.91 -0.02 4.29 16 29 H 0.39 14.78 8.69 -92.71 -0.81 13.98 16 30 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.07 1.30 8.05 -2.39 -0.02 1.28 16 32 H 0.10 0.82 6.71 -2.39 -0.02 0.81 16 33 H 0.13 0.58 8.14 -2.39 -0.02 0.57 16 34 H 0.41 5.55 8.91 -92.70 -0.83 4.72 16 35 H 0.12 1.75 6.77 -2.38 -0.02 1.74 16 36 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 2.02 7.01 -2.39 -0.02 2.01 16 38 H 0.05 1.39 7.86 -2.38 -0.02 1.37 16 Total: -1.00 -72.81 309.46 0.40 -72.41 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: -0.53 Total: 34.59 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 4.32 Total: -12.20 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -5.37 Total: -115.23 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.36 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.78 kcal Total: -72.81 0.40 -72.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351354411.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.913 kcal (2) G-P(sol) polarization free energy of solvation -72.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds