Wall clock time and date at job start Mon Mar 30 2020 02:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47194 * 274.98544 * 3 2 1 5 5 H 1.48494 * 109.47086 * 34.98878 * 3 2 1 6 6 H 1.48501 * 109.46769 * 154.98935 * 3 2 1 7 7 C 1.40031 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00078 * 173.63468 * 7 2 1 9 9 C 1.41340 * 119.99445 * 353.63516 * 7 2 1 10 10 C 1.40621 * 119.78487 * 186.36084 * 9 7 2 11 11 C 1.38297 * 119.12823 * 179.97438 * 10 9 7 12 12 C 1.38698 * 118.67187 * 359.74751 * 11 10 9 13 13 C 1.39635 * 119.49268 * 0.51721 * 12 11 10 14 14 N 1.39269 * 119.57460 * 179.74712 * 13 12 11 15 15 C 1.34774 * 119.99868 * 340.97003 * 14 13 12 16 16 O 1.21272 * 120.00161 * 354.51094 * 15 14 13 17 17 C 1.50700 * 120.00091 * 174.51694 * 15 14 13 18 18 H 1.08995 * 109.46167 * 320.01808 * 17 15 14 19 19 C 1.53031 * 109.46303 * 79.99833 * 17 15 14 20 20 C 1.53129 * 109.27889 * 179.19767 * 19 17 15 21 21 C 1.53122 * 109.15863 * 302.34363 * 20 19 17 22 22 C 1.53037 * 109.27786 * 57.65184 * 21 20 19 23 23 N 1.46844 * 109.52648 * 300.82039 * 22 21 20 24 24 N 1.31932 * 120.85208 * 359.47104 * 13 12 11 25 25 H 0.97001 * 120.00084 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.43439 * 359.97438 * 10 9 7 27 27 H 1.07999 * 120.66653 * 179.97438 * 11 10 9 28 28 H 1.07996 * 120.25325 * 180.26471 * 12 11 10 29 29 H 0.96995 * 120.00180 * 161.24215 * 14 13 12 30 30 H 1.08994 * 109.50495 * 299.13388 * 19 17 15 31 31 H 1.09001 * 109.50671 * 59.21996 * 19 17 15 32 32 H 1.09003 * 109.52095 * 62.24628 * 20 19 17 33 33 H 1.08999 * 109.51997 * 182.37541 * 20 19 17 34 34 H 1.09001 * 109.50285 * 177.59334 * 21 20 19 35 35 H 1.09006 * 109.50271 * 297.67364 * 21 20 19 36 36 H 1.09001 * 109.46219 * 60.83770 * 22 21 20 37 37 H 1.08999 * 109.46314 * 180.81202 * 22 21 20 38 38 H 1.00893 * 111.00402 * 297.64665 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4955 2.6199 0.8028 6 1 3.5877 1.4119 0.5919 7 6 2.0075 -1.2127 -0.0005 8 1 3.0825 -1.2155 -0.1042 9 6 1.3073 -2.4330 0.1346 10 6 2.0213 -3.6370 0.2683 11 6 1.3224 -4.8231 0.4002 12 6 -0.0640 -4.7819 0.4013 13 6 -0.7154 -3.5551 0.2592 14 7 -2.1075 -3.5124 0.2547 15 6 -2.8151 -4.6311 0.0015 16 8 -2.2428 -5.6508 -0.3200 17 6 -4.3175 -4.6149 0.1178 18 1 -4.6081 -4.0250 0.9871 19 6 -4.9200 -3.9939 -1.1444 20 6 -6.4470 -3.9978 -1.0305 21 6 -6.9317 -5.4352 -0.8220 22 6 -6.2708 -6.0145 0.4309 23 7 -4.8112 -5.9894 0.2722 24 7 -0.0293 -2.4351 0.1347 25 1 -0.4850 0.8400 0.0004 26 1 3.1013 -3.6355 0.2680 27 1 1.8456 -5.7621 0.5041 28 1 -0.6353 -5.6923 0.5070 29 1 -2.5677 -2.6767 0.4299 30 1 -4.5657 -2.9686 -1.2503 31 1 -4.6181 -4.5751 -2.0157 32 1 -6.7505 -3.3843 -0.1821 33 1 -6.8815 -3.5949 -1.9453 34 1 -8.0145 -5.4397 -0.6974 35 1 -6.6625 -6.0393 -1.6885 36 1 -6.5521 -5.4180 1.2987 37 1 -6.6028 -7.0428 0.5741 38 1 -4.5217 -6.5667 -0.5030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353149399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:26 Heat of formation + Delta-G solvation = 0.526028 kcal Electronic energy + Delta-G solvation = -20972.571998 eV Core-core repulsion = 17814.580697 eV Total energy + Delta-G solvation = -3157.991302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22725 -38.51307 -37.29822 -34.27621 -33.28338 -31.89157 -31.36959 -30.38825 -29.05884 -25.64909 -24.55272 -23.37980 -21.72824 -21.52664 -20.52699 -19.73098 -17.59694 -17.32639 -16.18869 -15.51466 -15.20508 -14.84813 -14.60148 -14.55919 -14.27233 -14.20986 -13.53910 -13.33828 -12.95049 -12.63846 -12.37592 -12.11173 -11.94321 -11.71719 -11.41189 -11.26465 -11.13169 -11.01511 -10.81112 -10.69994 -10.66542 -10.12153 -9.80890 -9.20966 -8.94455 -8.39213 -8.03287 -7.68590 -7.09319 -6.42732 -4.50433 2.49301 2.89681 3.08486 3.11937 3.23299 3.37553 3.43449 3.94833 4.29138 4.58641 4.67198 4.75914 4.79602 4.92671 5.13109 5.16457 5.28616 5.48378 5.59630 5.72515 5.76530 5.83396 5.89928 5.91620 6.07737 6.18166 6.43738 6.75444 6.81000 6.83922 6.89928 7.14073 7.31044 7.49119 7.52514 7.87112 7.91199 8.13935 8.30094 8.66849 8.72908 8.97400 10.04668 10.30838 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.004439 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.679798 B = 6306.119351 C = 7291.892384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.724 5.724 2 C 0.072 3.928 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.436 4.436 8 H 0.085 0.915 9 C 0.279 3.721 10 C -0.288 4.288 11 C -0.050 4.050 12 C -0.311 4.311 13 C 0.356 3.644 14 N -0.645 5.645 15 C 0.520 3.480 16 O -0.513 6.513 17 C 0.076 3.924 18 H 0.103 0.897 19 C -0.149 4.149 20 C -0.117 4.117 21 C -0.161 4.161 22 C 0.059 3.941 23 N -0.667 5.667 24 N -0.507 5.507 25 H 0.270 0.730 26 H 0.100 0.900 27 H 0.099 0.901 28 H 0.132 0.868 29 H 0.406 0.594 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.919 -3.984 -0.380 13.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.152 4.152 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.152 3.848 10 C -0.311 4.311 11 C -0.075 4.075 12 C -0.336 4.336 13 C 0.122 3.878 14 N -0.289 5.289 15 C 0.305 3.695 16 O -0.387 6.387 17 C -0.038 4.038 18 H 0.121 0.879 19 C -0.189 4.189 20 C -0.154 4.154 21 C -0.200 4.200 22 C -0.071 4.071 23 N -0.298 5.298 24 N -0.226 5.226 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.149 0.851 29 H 0.242 0.758 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -13.026 -3.838 0.005 13.579 hybrid contribution 0.296 0.714 -0.795 1.109 sum -12.730 -3.124 -0.790 13.132 Atomic orbital electron populations 1.70117 1.07243 1.27480 1.29739 1.26027 0.94861 1.00983 0.93360 0.86331 0.80666 0.80951 0.78968 1.19581 1.20150 1.18484 1.19560 0.94646 0.89362 1.43277 0.89688 1.18187 0.86406 0.92047 0.88138 1.21725 0.98790 0.93754 1.16808 1.20816 0.93723 0.96590 0.96341 1.21621 0.94604 0.98033 1.19351 1.18507 0.82891 0.91355 0.95029 1.43182 1.05566 1.11954 1.68218 1.20306 0.88863 0.83333 0.77031 1.90598 1.70833 1.32160 1.45143 1.21460 0.91445 0.91865 0.99012 0.87911 1.22204 0.96140 1.02568 0.98009 1.21548 0.94850 0.96802 1.02232 1.22310 1.00964 0.96977 0.99780 1.22051 0.86644 1.01450 0.96914 1.60367 1.10676 1.08610 1.50149 1.68058 1.08438 1.24649 1.21420 0.91877 0.88231 0.88319 0.85085 0.75824 0.90370 0.91179 0.91514 0.91586 0.91382 0.91868 0.90793 0.90345 0.82752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.77 11.49 55.55 0.64 -18.13 16 2 C 0.07 1.82 5.49 -17.35 -0.10 1.72 16 3 Si 0.91 18.43 29.56 -169.99 -5.03 13.41 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.44 -11.70 9.13 -37.73 -0.34 -12.05 16 8 H 0.09 2.14 7.85 -52.49 -0.41 1.72 16 9 C 0.28 7.74 6.54 -84.99 -0.56 7.18 16 10 C -0.29 -7.32 9.83 -38.66 -0.38 -7.70 16 11 C -0.05 -1.21 10.15 -39.39 -0.40 -1.61 16 12 C -0.31 -7.75 8.83 -38.89 -0.34 -8.10 16 13 C 0.36 8.93 7.51 -154.97 -1.16 7.77 16 14 N -0.64 -13.02 5.41 -11.40 -0.06 -13.09 16 15 C 0.52 9.49 6.92 -10.99 -0.08 9.41 16 16 O -0.51 -10.98 13.00 5.56 0.07 -10.91 16 17 C 0.08 1.01 2.83 -68.87 -0.19 0.81 16 18 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 19 C -0.15 -1.71 5.34 -26.65 -0.14 -1.85 16 20 C -0.12 -1.05 6.00 -26.60 -0.16 -1.21 16 21 C -0.16 -1.33 6.08 -26.65 -0.16 -1.49 16 22 C 0.06 0.55 6.55 -3.84 -0.03 0.52 16 23 N -0.67 -8.39 6.28 -107.99 -0.68 -9.07 16 24 N -0.51 -13.90 7.92 -10.25 -0.08 -13.99 16 25 H 0.27 6.32 8.29 -40.82 -0.34 5.98 16 26 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 27 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 28 H 0.13 3.23 5.34 -52.50 -0.28 2.95 16 29 H 0.41 7.35 8.83 -40.82 -0.36 6.99 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.35 4.63 8.31 -39.30 -0.33 4.30 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -30.86 314.20 -9.61 -40.47 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -5.16 Total: 13.15 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -4.04 Total: -6.59 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.18 Total: -54.27 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.07 Total: -10.91 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.86 -9.61 -40.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353149399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.998 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds