Wall clock time and date at job start Mon Mar 30 2020 02:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86801 * 120.00019 * 2 1 4 4 H 1.48500 * 109.47194 * 274.98544 * 3 2 1 5 5 H 1.48494 * 109.47086 * 34.98878 * 3 2 1 6 6 H 1.48501 * 109.46769 * 154.98935 * 3 2 1 7 7 C 1.40031 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00078 * 173.63468 * 7 2 1 9 9 C 1.41340 * 119.99445 * 353.63516 * 7 2 1 10 10 C 1.40621 * 119.78487 * 186.36084 * 9 7 2 11 11 C 1.38297 * 119.12823 * 179.97438 * 10 9 7 12 12 C 1.38698 * 118.67187 * 359.74751 * 11 10 9 13 13 C 1.39635 * 119.49268 * 0.51721 * 12 11 10 14 14 N 1.39269 * 119.57460 * 179.74712 * 13 12 11 15 15 C 1.34774 * 119.99868 * 340.97003 * 14 13 12 16 16 O 1.21272 * 120.00161 * 354.51094 * 15 14 13 17 17 C 1.50700 * 120.00091 * 174.51694 * 15 14 13 18 18 H 1.08995 * 109.46167 * 320.01808 * 17 15 14 19 19 C 1.53031 * 109.46303 * 79.99833 * 17 15 14 20 20 C 1.53129 * 109.27889 * 179.19767 * 19 17 15 21 21 C 1.53122 * 109.15863 * 302.34363 * 20 19 17 22 22 C 1.53037 * 109.27786 * 57.65184 * 21 20 19 23 23 N 1.46844 * 109.52648 * 300.82039 * 22 21 20 24 24 N 1.31932 * 120.85208 * 359.47104 * 13 12 11 25 25 H 0.97001 * 120.00084 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.43439 * 359.97438 * 10 9 7 27 27 H 1.07999 * 120.66653 * 179.97438 * 11 10 9 28 28 H 1.07996 * 120.25325 * 180.26471 * 12 11 10 29 29 H 0.96995 * 120.00180 * 161.24215 * 14 13 12 30 30 H 1.08994 * 109.50495 * 299.13388 * 19 17 15 31 31 H 1.09001 * 109.50671 * 59.21996 * 19 17 15 32 32 H 1.09003 * 109.52095 * 62.24628 * 20 19 17 33 33 H 1.08999 * 109.51997 * 182.37541 * 20 19 17 34 34 H 1.09001 * 109.50285 * 177.59334 * 21 20 19 35 35 H 1.09006 * 109.50271 * 297.67364 * 21 20 19 36 36 H 1.09001 * 109.46219 * 60.83770 * 22 21 20 37 37 H 1.08999 * 109.46314 * 180.81202 * 22 21 20 38 38 H 1.00893 * 111.00402 * 297.64665 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.3835 2.1073 -1.3948 5 1 1.4955 2.6199 0.8028 6 1 3.5877 1.4119 0.5919 7 6 2.0075 -1.2127 -0.0005 8 1 3.0825 -1.2155 -0.1042 9 6 1.3073 -2.4330 0.1346 10 6 2.0213 -3.6370 0.2683 11 6 1.3224 -4.8231 0.4002 12 6 -0.0640 -4.7819 0.4013 13 6 -0.7154 -3.5551 0.2592 14 7 -2.1075 -3.5124 0.2547 15 6 -2.8151 -4.6311 0.0015 16 8 -2.2428 -5.6508 -0.3200 17 6 -4.3175 -4.6149 0.1178 18 1 -4.6081 -4.0250 0.9871 19 6 -4.9200 -3.9939 -1.1444 20 6 -6.4470 -3.9978 -1.0305 21 6 -6.9317 -5.4352 -0.8220 22 6 -6.2708 -6.0145 0.4309 23 7 -4.8112 -5.9894 0.2722 24 7 -0.0293 -2.4351 0.1347 25 1 -0.4850 0.8400 0.0004 26 1 3.1013 -3.6355 0.2680 27 1 1.8456 -5.7621 0.5041 28 1 -0.6353 -5.6923 0.5070 29 1 -2.5677 -2.6767 0.4299 30 1 -4.5657 -2.9686 -1.2503 31 1 -4.6181 -4.5751 -2.0157 32 1 -6.7505 -3.3843 -0.1821 33 1 -6.8815 -3.5949 -1.9453 34 1 -8.0145 -5.4397 -0.6974 35 1 -6.6625 -6.0393 -1.6885 36 1 -6.5521 -5.4180 1.2987 37 1 -6.6028 -7.0428 0.5741 38 1 -4.5217 -6.5667 -0.5030 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353149399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:25 Heat of formation + Delta-G solvation = -20.130109 kcal Electronic energy + Delta-G solvation = -20973.467716 eV Core-core repulsion = 17814.580697 eV Total energy + Delta-G solvation = -3158.887019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.68499 -39.99039 -38.74434 -36.02889 -35.12571 -32.76017 -32.48143 -32.29588 -30.82207 -27.51828 -25.82023 -24.21435 -23.53941 -23.21319 -21.44548 -21.25173 -19.38010 -18.90555 -17.87281 -16.90113 -16.54588 -16.30955 -16.21328 -15.72028 -15.54797 -15.33946 -15.12752 -14.73289 -14.37038 -14.09620 -13.85262 -13.62203 -13.12354 -12.94513 -12.86675 -12.67122 -12.61567 -12.45162 -12.23820 -11.85913 -11.75477 -11.58426 -11.50624 -11.04057 -10.53521 -9.99481 -9.65949 -9.34989 -8.99458 -8.32346 -6.51702 0.70860 1.08352 1.43109 1.51229 1.57639 1.73878 1.97548 2.24611 2.86190 3.29298 3.52015 3.80998 3.85692 3.91476 4.11160 4.17905 4.24203 4.34090 4.48456 4.63270 4.72249 4.82885 4.86587 4.91862 4.92179 4.97295 5.06321 5.09762 5.16369 5.23832 5.35826 5.60505 5.65829 5.92191 5.92494 6.08217 6.25245 6.33304 6.50764 6.77053 6.92762 7.20050 8.08460 8.44399 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.004439 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.679798 B = 6306.119351 C = 7291.892384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.467 4.467 8 H 0.091 0.909 9 C 0.244 3.756 10 C -0.307 4.307 11 C -0.049 4.049 12 C -0.328 4.328 13 C 0.347 3.653 14 N -0.642 5.642 15 C 0.517 3.483 16 O -0.546 6.546 17 C 0.090 3.910 18 H 0.121 0.879 19 C -0.145 4.145 20 C -0.112 4.112 21 C -0.155 4.155 22 C 0.059 3.941 23 N -0.682 5.682 24 N -0.532 5.532 25 H 0.280 0.720 26 H 0.114 0.886 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.415 0.585 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.251 -3.174 -0.200 14.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.498 4.498 8 H 0.109 0.891 9 C 0.118 3.882 10 C -0.330 4.330 11 C -0.073 4.073 12 C -0.353 4.353 13 C 0.111 3.889 14 N -0.288 5.288 15 C 0.305 3.695 16 O -0.422 6.422 17 C -0.024 4.024 18 H 0.138 0.862 19 C -0.185 4.185 20 C -0.149 4.149 21 C -0.195 4.195 22 C -0.070 4.070 23 N -0.313 5.313 24 N -0.252 5.252 25 H 0.091 0.909 26 H 0.132 0.868 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.252 0.748 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.401 -3.047 0.191 14.721 hybrid contribution 0.653 0.374 -0.858 1.141 sum -13.748 -2.672 -0.667 14.021 Atomic orbital electron populations 1.70184 1.08821 1.29145 1.29357 1.26953 0.95782 1.04374 0.92356 0.85103 0.79118 0.75694 0.79220 1.18884 1.19101 1.18043 1.19953 0.95255 0.90292 1.44324 0.89061 1.18713 0.87198 0.93384 0.88903 1.21903 0.99591 0.93701 1.17805 1.21172 0.93669 0.97559 0.94923 1.21824 0.95237 0.98124 1.20084 1.18899 0.84856 0.91047 0.94062 1.43257 1.03942 1.13220 1.68371 1.21338 0.90899 0.82005 0.75254 1.90562 1.72055 1.33164 1.46399 1.21399 0.87270 0.93057 1.00632 0.86151 1.22180 0.98208 1.01772 0.96356 1.21551 0.92418 0.97672 1.03308 1.22262 1.02099 0.96155 0.98941 1.22169 0.84452 1.02608 0.97767 1.60404 1.13032 1.07838 1.50021 1.68099 1.08685 1.25636 1.22747 0.90927 0.86829 0.85210 0.84991 0.74799 0.90737 0.92530 0.90326 0.90578 0.89224 0.92315 0.89971 0.89120 0.83417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.31 11.49 21.84 0.25 -39.06 16 2 C 0.03 1.37 5.49 85.29 0.47 1.84 16 3 Si 0.99 37.41 29.56 68.60 2.03 39.44 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 6 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 7 C -0.47 -25.43 9.13 23.47 0.21 -25.21 16 8 H 0.09 4.65 7.85 -2.91 -0.02 4.62 16 9 C 0.24 13.92 6.54 40.21 0.26 14.18 16 10 C -0.31 -15.92 9.83 22.87 0.22 -15.69 16 11 C -0.05 -2.37 10.15 22.39 0.23 -2.15 16 12 C -0.33 -16.65 8.83 22.72 0.20 -16.45 16 13 C 0.35 17.80 7.51 133.23 1.00 18.81 16 14 N -0.64 -26.41 5.41 -308.38 -1.67 -28.08 16 15 C 0.52 19.03 6.92 87.66 0.61 19.64 16 16 O -0.55 -23.79 13.00 -3.00 -0.04 -23.83 16 17 C 0.09 2.29 2.83 44.19 0.12 2.42 16 18 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 19 C -0.15 -3.16 5.34 30.65 0.16 -3.00 16 20 C -0.11 -1.72 6.00 30.68 0.18 -1.53 16 21 C -0.16 -2.13 6.08 30.65 0.19 -1.95 16 22 C 0.06 0.95 6.55 86.33 0.57 1.51 16 23 N -0.68 -16.35 6.28 -495.57 -3.11 -19.47 16 24 N -0.53 -29.98 7.92 -186.35 -1.48 -31.45 16 25 H 0.28 13.04 8.29 -92.71 -0.77 12.27 16 26 H 0.11 5.36 8.06 -2.91 -0.02 5.34 16 27 H 0.13 5.32 8.06 -2.91 -0.02 5.29 16 28 H 0.13 6.64 5.34 -3.10 -0.02 6.62 16 29 H 0.42 15.23 8.83 -92.71 -0.82 14.41 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.35 8.95 8.31 -89.70 -0.75 8.21 16 Total: -1.00 -67.85 314.20 -0.06 -67.91 By element: Atomic # 1 Polarization: 42.59 SS G_CDS: -0.47 Total: 42.12 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 4.43 Total: -7.57 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -6.01 Total: -118.06 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.04 Total: -23.83 kcal Atomic # 14 Polarization: 37.41 SS G_CDS: 2.03 Total: 39.44 kcal Total: -67.85 -0.06 -67.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353149399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.778 kcal (2) G-P(sol) polarization free energy of solvation -67.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds