Wall clock time and date at job start Mon Mar 30 2020 02:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86802 * 119.99874 * 2 1 4 4 H 1.48493 * 109.47350 * 273.97912 * 3 2 1 5 5 H 1.48502 * 109.46886 * 33.98210 * 3 2 1 6 6 H 1.48501 * 109.47023 * 153.97707 * 3 2 1 7 7 C 1.38956 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99684 * 339.83287 * 7 2 1 9 9 N 1.37091 * 120.00273 * 160.11073 * 7 2 1 10 10 C 1.34774 * 120.00497 * 147.48621 * 9 7 2 11 11 O 1.21290 * 119.99610 * 355.33114 * 10 9 7 12 12 C 1.50699 * 120.00289 * 175.33699 * 10 9 7 13 13 H 1.08995 * 109.50865 * 325.16227 * 12 10 9 14 14 C 1.53152 * 109.50627 * 205.07106 * 12 10 9 15 15 C 1.53250 * 109.50555 * 170.63343 * 14 12 10 16 16 N 1.46479 * 108.82337 * 50.30569 * 15 14 12 17 17 C 1.36309 * 127.77295 * 162.83471 * 16 15 14 18 18 C 1.34851 * 106.69130 * 180.11035 * 17 16 15 19 19 N 1.34300 * 108.06923 * 359.97438 * 18 17 16 20 20 C 1.30095 * 109.21061 * 359.97438 * 19 18 17 21 21 C 1.51037 * 127.38882 * 180.02562 * 20 19 18 22 22 C 1.46507 * 119.99754 * 327.48432 * 9 7 2 23 23 C 1.52999 * 117.49862 * 315.79521 * 22 9 7 24 24 C 1.52996 * 60.00373 * 252.51525 * 23 22 9 25 25 H 0.96992 * 120.00481 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46743 * 290.59680 * 14 12 10 27 27 H 1.08999 * 109.46503 * 50.58018 * 14 12 10 28 28 H 1.08992 * 109.54257 * 290.52064 * 15 14 12 29 29 H 1.09001 * 109.70615 * 170.18997 * 15 14 12 30 30 H 1.08006 * 126.65556 * 0.06596 * 17 16 15 31 31 H 1.07995 * 125.96903 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.71631 * 44.36896 * 21 20 19 33 33 H 1.09000 * 109.75295 * 283.74909 * 21 20 19 34 34 H 1.08999 * 115.55177 * 101.50969 * 22 9 7 35 35 H 1.09006 * 117.49921 * 0.02562 * 23 22 9 36 36 H 1.09002 * 117.50026 * 145.01965 * 23 22 9 37 37 H 1.08998 * 117.49979 * 252.51726 * 24 23 22 38 38 H 1.08996 * 117.51783 * 107.48134 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4114 2.0951 -1.3966 5 1 1.4901 2.6269 0.7826 6 1 3.5851 1.4174 0.6143 7 6 2.0090 -1.2033 -0.0005 8 1 1.5186 -2.1101 0.3215 9 7 3.3185 -1.2385 -0.4044 10 6 4.1726 -2.1190 0.1539 11 8 3.8052 -2.8215 1.0719 12 6 5.5841 -2.2305 -0.3621 13 1 5.5917 -2.0674 -1.4397 14 6 6.1331 -3.6262 -0.0521 15 6 7.4703 -3.8222 -0.7748 16 7 8.3352 -2.6755 -0.4876 17 6 9.6856 -2.5867 -0.6507 18 6 10.0430 -1.3482 -0.2546 19 7 8.9342 -0.7007 0.1392 20 6 7.9074 -1.4876 0.0022 21 6 6.4644 -1.1766 0.3217 22 6 3.7897 -0.3190 -1.4432 23 6 2.9024 -0.1308 -2.6754 24 6 4.2063 -0.9235 -2.7856 25 1 -0.4850 0.8399 0.0004 26 1 6.2838 -3.7269 1.0227 27 1 5.4223 -4.3797 -0.3914 28 1 7.2978 -3.8897 -1.8488 29 1 7.9475 -4.7369 -0.4231 30 1 10.3421 -3.3587 -1.0241 31 1 11.0455 -0.9467 -0.2548 32 1 6.2101 -0.1853 -0.0533 33 1 6.3099 -1.2124 1.4001 34 1 4.3468 0.5473 -1.0867 35 1 1.9679 -0.6908 -2.7130 36 1 2.8755 0.8596 -3.1297 37 1 5.0374 -0.4546 -3.3123 38 1 4.1303 -2.0052 -2.8957 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001442319715.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:16 Heat of formation + Delta-G solvation = 45.864349 kcal Electronic energy + Delta-G solvation = -22031.346971 eV Core-core repulsion = 18875.321687 eV Total energy + Delta-G solvation = -3156.025285 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.25153 -41.08963 -38.38278 -37.07628 -35.05197 -34.23854 -33.42476 -30.78378 -29.78079 -27.31660 -25.47037 -24.09337 -23.39323 -23.20333 -22.30602 -20.56735 -19.90047 -18.95239 -18.05208 -17.78172 -17.48262 -16.79705 -16.17572 -16.04392 -15.41595 -15.23207 -15.02905 -14.84323 -14.70094 -14.60518 -14.23395 -13.68964 -13.47891 -13.06038 -12.92267 -12.80600 -12.75827 -12.40497 -12.23412 -12.12694 -11.85087 -11.40756 -11.25013 -11.04412 -10.92012 -10.50619 -10.32424 -9.79627 -9.24254 -8.50068 -6.11094 1.14200 1.22540 1.32490 1.41753 1.81764 1.91025 2.19680 2.20823 2.51096 2.74015 3.01014 3.34162 3.52917 3.58652 3.65526 3.83866 3.98045 4.05933 4.17121 4.22222 4.27506 4.30047 4.54176 4.59220 4.61330 4.68460 4.73271 4.84370 4.87933 4.93341 5.08595 5.14042 5.30824 5.41437 5.53445 5.91003 5.99911 6.24016 6.53755 6.92347 7.19341 7.31715 7.83611 8.66424 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025769 B = 0.006033 C = 0.005693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.313613 B = 4640.182120 C = 4917.556880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.031 3.969 3 Si 0.933 3.067 4 H -0.227 1.227 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.331 4.331 8 H 0.049 0.951 9 N -0.445 5.445 10 C 0.468 3.532 11 O -0.612 6.612 12 C -0.093 4.093 13 H 0.119 0.881 14 C -0.113 4.113 15 C 0.110 3.890 16 N -0.453 5.453 17 C -0.037 4.037 18 C -0.061 4.061 19 N -0.528 5.528 20 C 0.194 3.806 21 C -0.015 4.015 22 C 0.008 3.992 23 C -0.165 4.165 24 C -0.147 4.147 25 H 0.279 0.721 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.217 0.783 31 H 0.188 0.812 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.722 -3.786 -9.319 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.756 3.244 4 H -0.150 1.150 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.458 4.458 8 H 0.067 0.933 9 N -0.165 5.165 10 C 0.258 3.742 11 O -0.497 6.497 12 C -0.115 4.115 13 H 0.137 0.863 14 C -0.151 4.151 15 C -0.011 4.011 16 N -0.135 5.135 17 C -0.171 4.171 18 C -0.209 4.209 19 N -0.248 5.248 20 C -0.068 4.068 21 C -0.055 4.055 22 C -0.096 4.096 23 C -0.202 4.202 24 C -0.185 4.185 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.132 0.868 29 H 0.142 0.858 30 H 0.234 0.766 31 H 0.205 0.795 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.130 0.870 35 H 0.101 0.899 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 18.214 -3.380 -8.633 20.438 hybrid contribution -0.611 0.020 0.515 0.799 sum 17.603 -3.360 -8.118 19.674 Atomic orbital electron populations 1.69840 1.07961 1.29162 1.47751 1.25878 0.95542 1.01340 0.94392 0.86057 0.78663 0.78838 0.80798 1.14974 1.22452 1.19312 1.18640 0.85803 0.95202 1.46165 0.93257 1.43328 1.07978 1.32701 1.32483 1.20795 0.87359 0.82871 0.83205 1.90537 1.79244 1.47884 1.32054 1.21333 0.90305 0.96954 1.02871 0.86302 1.21675 0.96219 0.95721 1.01529 1.22238 0.88673 0.87485 1.02698 1.45645 1.08025 1.12687 1.47163 1.23194 0.83488 1.01640 1.08732 1.22848 0.98152 0.93164 1.06695 1.69989 0.99119 1.33087 1.22573 1.22887 0.96099 0.83959 1.03888 1.19857 0.85248 0.99581 1.00803 1.22085 1.05820 0.97181 0.84513 1.23192 0.95819 1.02858 0.98380 1.23490 0.98641 1.00630 0.95711 0.91176 0.91911 0.88592 0.86830 0.85831 0.76640 0.79457 0.89057 0.91197 0.86997 0.89881 0.86497 0.84495 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.56 13.96 21.66 0.30 -53.25 16 2 C 0.03 1.74 4.90 84.93 0.42 2.16 16 3 Si 0.93 42.02 24.05 68.60 1.65 43.67 16 4 H -0.23 -8.65 6.14 99.48 0.61 -8.04 16 5 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.27 -12.04 6.72 99.48 0.67 -11.37 16 7 C -0.33 -19.10 8.95 84.04 0.75 -18.35 16 8 H 0.05 3.34 7.85 -2.91 -0.02 3.32 16 9 N -0.44 -21.01 2.60 -613.11 -1.59 -22.61 16 10 C 0.47 21.05 6.66 87.66 0.58 21.64 16 11 O -0.61 -33.26 16.11 -3.06 -0.05 -33.31 16 12 C -0.09 -2.92 1.84 -11.36 -0.02 -2.94 16 13 H 0.12 3.17 5.14 -2.39 -0.01 3.16 16 14 C -0.11 -2.92 4.64 30.73 0.14 -2.77 16 15 C 0.11 1.82 6.98 86.47 0.60 2.42 16 16 N -0.45 -10.06 3.13 -513.84 -1.61 -11.67 16 17 C -0.04 -0.68 11.64 83.22 0.97 0.29 16 18 C -0.06 -1.44 11.87 83.54 0.99 -0.45 16 19 N -0.53 -16.69 11.24 -187.52 -2.11 -18.80 16 20 C 0.19 5.76 7.65 138.23 1.06 6.81 16 21 C -0.02 -0.50 5.56 30.09 0.17 -0.33 16 22 C 0.01 0.30 2.49 44.99 0.11 0.41 16 23 C -0.17 -5.56 7.91 30.59 0.24 -5.32 16 24 C -0.15 -3.92 8.34 30.60 0.26 -3.66 16 25 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 26 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16 27 H 0.10 2.43 8.11 -2.39 -0.02 2.41 16 28 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.22 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.19 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.09 2.96 7.33 -2.39 -0.02 2.94 16 33 H 0.07 2.54 8.11 -2.39 -0.02 2.52 16 34 H 0.11 3.95 5.77 -2.39 -0.01 3.94 16 35 H 0.08 3.35 7.86 -2.38 -0.02 3.33 16 36 H 0.12 3.37 7.62 -2.39 -0.02 3.35 16 37 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.10 2.63 7.79 -2.39 -0.02 2.61 16 Total: -1.00 -78.06 303.03 3.79 -74.26 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.93 Total: 21.82 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: 6.27 Total: -0.10 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -5.01 Total: -106.33 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.05 Total: -33.31 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.65 Total: 43.67 kcal Total: -78.06 3.79 -74.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001442319715.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.127 kcal (2) G-P(sol) polarization free energy of solvation -78.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds