Wall clock time and date at job start Mon Mar 30 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48503 * 109.46734 * 239.99950 * 3 2 1 5 5 H 1.48496 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47376 * 120.00291 * 3 2 1 7 7 C 1.37882 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47235 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47473 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47551 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00258 * 180.02562 * 12 11 10 14 14 O 1.21552 * 120.00341 * 359.97438 * 13 12 11 15 15 C 1.47836 * 119.99800 * 179.97438 * 13 12 11 16 16 C 1.39948 * 120.93999 * 359.72080 * 15 13 12 17 17 N 1.32147 * 118.92164 * 179.73351 * 16 15 13 18 18 C 1.31872 * 120.96680 * 0.53005 * 17 16 15 19 19 C 1.50706 * 118.95350 * 179.71935 * 18 17 16 20 20 C 1.53004 * 117.49617 * 8.64449 * 19 18 17 21 21 C 1.52996 * 117.49651 * 300.02271 * 19 18 17 22 22 N 1.31872 * 122.09511 * 359.74337 * 18 17 16 23 23 C 1.32139 * 120.96942 * 359.97438 * 22 18 17 24 24 H 0.97001 * 120.00657 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47247 * 59.99956 * 9 7 2 26 26 H 1.08996 * 109.47258 * 300.00117 * 9 7 2 27 27 H 1.09000 * 109.46870 * 59.99932 * 10 9 7 28 28 H 1.09004 * 109.47108 * 300.00038 * 10 9 7 29 29 H 1.09000 * 109.47250 * 60.00015 * 11 10 9 30 30 H 1.09004 * 109.46862 * 300.00038 * 11 10 9 31 31 H 0.96999 * 119.99694 * 359.97438 * 12 11 10 32 32 H 1.07995 * 120.54051 * 359.97115 * 16 15 13 33 33 H 1.08998 * 115.54951 * 154.34808 * 19 18 17 34 34 H 1.09002 * 117.50102 * 0.02562 * 20 19 18 35 35 H 1.09000 * 117.49502 * 145.02066 * 20 19 18 36 36 H 1.09005 * 117.49969 * 214.97488 * 21 19 18 37 37 H 1.08997 * 117.50469 * 359.97438 * 21 19 18 38 38 H 1.07996 * 120.54439 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4323 -6.1006 0.0005 13 6 1.9831 -7.3713 -0.0004 14 8 0.7880 -7.5935 -0.0013 15 6 2.9438 -8.4949 -0.0004 16 6 4.3237 -8.2617 -0.0052 17 7 5.1466 -9.2957 0.0004 18 6 4.6844 -10.5307 -0.0001 19 6 5.6637 -11.6762 0.0000 20 6 7.1426 -11.3413 0.2047 21 6 6.6393 -11.7716 -1.1747 22 7 3.3925 -10.7954 -0.0011 23 6 2.4990 -9.8219 -0.0012 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8719 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8540 -5.0446 -0.8903 30 1 0.8534 -5.0450 0.8897 31 1 3.3860 -5.9233 0.0008 32 1 4.7098 -7.2531 -0.0095 33 1 5.2953 -12.6097 0.4254 34 1 7.4071 -10.2925 0.3396 35 1 7.7473 -12.0545 0.7648 36 1 6.9131 -12.7679 -1.5220 37 1 6.5726 -11.0062 -1.9478 38 1 1.4427 -10.0464 -0.0024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001456157054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:34 Heat of formation + Delta-G solvation = 22.123876 kcal Electronic energy + Delta-G solvation = -19549.501588 eV Core-core repulsion = 16392.446839 eV Total energy + Delta-G solvation = -3157.054749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.61499 -39.45702 -37.37274 -35.62279 -34.23336 -33.40973 -32.39341 -31.05088 -27.24664 -25.80244 -24.92925 -23.24313 -22.74517 -21.91653 -20.91331 -20.33874 -18.14975 -18.04322 -17.02035 -16.36926 -15.81630 -15.61390 -15.34670 -14.97359 -14.59496 -14.48117 -14.18814 -13.85590 -13.74776 -12.64700 -12.32555 -11.99196 -11.91698 -11.85469 -11.80033 -11.30583 -11.21729 -10.92238 -10.90133 -10.80724 -10.67337 -10.12960 -9.93891 -9.70029 -9.63017 -9.47617 -9.18437 -8.95978 -8.40824 -6.05455 -4.08961 0.08820 0.68622 2.62217 3.05492 3.25625 3.29585 3.32620 3.34712 3.36500 3.59052 3.80226 4.11740 4.40320 4.42370 4.45140 4.58062 4.61201 4.70158 4.93457 5.25583 5.30325 5.38698 5.41261 5.59784 5.67330 5.67515 5.81077 5.90923 6.06023 6.28329 6.50398 6.51244 6.70499 6.91622 7.44362 7.58212 7.65229 7.70143 7.92450 8.10157 8.33348 8.97366 9.55462 11.05732 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032578 B = 0.002647 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.282038 B =10573.501450 C =11336.827019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.717 5.717 13 C 0.563 3.437 14 O -0.533 6.533 15 C -0.244 4.244 16 C 0.187 3.813 17 N -0.519 5.519 18 C 0.364 3.636 19 C -0.109 4.109 20 C -0.152 4.152 21 C -0.153 4.153 22 N -0.517 5.517 23 C 0.211 3.789 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.397 0.603 32 H 0.174 0.826 33 H 0.132 0.868 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.549 -22.465 -0.384 25.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.006 4.006 12 N -0.367 5.367 13 C 0.347 3.653 14 O -0.410 6.410 15 C -0.252 4.252 16 C 0.020 3.980 17 N -0.232 5.232 18 C 0.099 3.901 19 C -0.129 4.129 20 C -0.189 4.189 21 C -0.191 4.191 22 N -0.230 5.230 23 C 0.044 3.956 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.232 0.768 32 H 0.191 0.809 33 H 0.150 0.850 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 12.146 -23.229 -0.376 26.216 hybrid contribution 0.153 1.876 0.017 1.883 sum 12.299 -21.353 -0.359 24.644 Atomic orbital electron populations 1.69945 1.06069 1.26880 1.50327 1.25029 0.94863 0.99326 0.95210 0.86635 0.79564 0.83056 0.78604 1.20232 1.21253 1.20224 1.21151 0.92953 0.90914 1.51253 0.92675 1.19023 0.93815 0.90779 0.97726 1.21912 0.99863 0.93206 1.01009 1.21750 0.91735 0.84709 1.02435 1.46129 1.11000 1.05673 1.73920 1.17759 0.87663 0.82567 0.77307 1.90803 1.15753 1.84612 1.49864 1.21900 0.96270 0.97233 1.09762 1.23497 0.88554 0.98851 0.87103 1.68143 1.40170 0.99558 1.15350 1.22399 0.89051 0.90749 0.87904 1.20709 0.89266 0.96034 1.06842 1.23059 0.93078 1.03914 0.98884 1.23006 1.00860 1.03454 0.91815 1.68283 1.02596 1.36928 1.15188 1.23530 1.00587 0.86517 0.84936 0.92816 0.96226 0.96210 0.92587 0.92600 0.91308 0.91312 0.76828 0.80873 0.85040 0.86998 0.87977 0.87712 0.88421 0.79936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.12 -2.25 5.27 -26.74 -0.14 -2.39 16 11 C 0.12 1.91 5.67 -4.05 -0.02 1.88 16 12 N -0.72 -9.43 5.51 -61.26 -0.34 -9.77 16 13 C 0.56 7.87 7.79 -12.33 -0.10 7.78 16 14 O -0.53 -9.33 16.45 5.32 0.09 -9.25 16 15 C -0.24 -2.81 5.91 -104.69 -0.62 -3.43 16 16 C 0.19 1.86 10.81 -16.78 -0.18 1.67 16 17 N -0.52 -5.52 9.32 -10.39 -0.10 -5.61 16 18 C 0.36 3.93 7.31 -157.06 -1.15 2.79 16 19 C -0.11 -0.88 6.23 -91.77 -0.57 -1.45 16 20 C -0.15 -0.99 10.01 -26.73 -0.27 -1.26 16 21 C -0.15 -1.00 10.23 -26.73 -0.27 -1.27 16 22 N -0.52 -6.01 10.31 -10.39 -0.11 -6.12 16 23 C 0.21 2.42 10.88 -16.78 -0.18 2.24 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.40 4.01 6.61 -40.82 -0.27 3.74 16 32 H 0.17 1.21 6.54 -52.49 -0.34 0.86 16 33 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.11 0.84 7.53 -51.93 -0.39 0.45 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.18 1.89 7.74 -52.49 -0.41 1.48 16 LS Contribution 331.27 15.07 4.99 4.99 Total: -1.00 -32.49 331.27 -8.98 -41.47 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.18 Total: -0.06 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -4.05 Total: -6.11 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.19 Total: -47.22 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.49 -8.98 -41.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456157054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.591 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds