Wall clock time and date at job start Mon Mar 30 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48503 * 109.46734 * 239.99950 * 3 2 1 5 5 H 1.48496 * 109.47319 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47376 * 120.00291 * 3 2 1 7 7 C 1.37882 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47235 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47473 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47551 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00258 * 180.02562 * 12 11 10 14 14 O 1.21552 * 120.00341 * 359.97438 * 13 12 11 15 15 C 1.47836 * 119.99800 * 179.97438 * 13 12 11 16 16 C 1.39948 * 120.93999 * 359.72080 * 15 13 12 17 17 N 1.32147 * 118.92164 * 179.73351 * 16 15 13 18 18 C 1.31872 * 120.96680 * 0.53005 * 17 16 15 19 19 C 1.50706 * 118.95350 * 179.71935 * 18 17 16 20 20 C 1.53004 * 117.49617 * 8.64449 * 19 18 17 21 21 C 1.52996 * 117.49651 * 300.02271 * 19 18 17 22 22 N 1.31872 * 122.09511 * 359.74337 * 18 17 16 23 23 C 1.32139 * 120.96942 * 359.97438 * 22 18 17 24 24 H 0.97001 * 120.00657 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47247 * 59.99956 * 9 7 2 26 26 H 1.08996 * 109.47258 * 300.00117 * 9 7 2 27 27 H 1.09000 * 109.46870 * 59.99932 * 10 9 7 28 28 H 1.09004 * 109.47108 * 300.00038 * 10 9 7 29 29 H 1.09000 * 109.47250 * 60.00015 * 11 10 9 30 30 H 1.09004 * 109.46862 * 300.00038 * 11 10 9 31 31 H 0.96999 * 119.99694 * 359.97438 * 12 11 10 32 32 H 1.07995 * 120.54051 * 359.97115 * 16 15 13 33 33 H 1.08998 * 115.54951 * 154.34808 * 19 18 17 34 34 H 1.09002 * 117.50102 * 0.02562 * 20 19 18 35 35 H 1.09000 * 117.49502 * 145.02066 * 20 19 18 36 36 H 1.09005 * 117.49969 * 214.97488 * 21 19 18 37 37 H 1.08997 * 117.50469 * 359.97438 * 21 19 18 38 38 H 1.07996 * 120.54439 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4323 -6.1006 0.0005 13 6 1.9831 -7.3713 -0.0004 14 8 0.7880 -7.5935 -0.0013 15 6 2.9438 -8.4949 -0.0004 16 6 4.3237 -8.2617 -0.0052 17 7 5.1466 -9.2957 0.0004 18 6 4.6844 -10.5307 -0.0001 19 6 5.6637 -11.6762 0.0000 20 6 7.1426 -11.3413 0.2047 21 6 6.6393 -11.7716 -1.1747 22 7 3.3925 -10.7954 -0.0011 23 6 2.4990 -9.8219 -0.0012 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8902 27 1 2.8719 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.8540 -5.0446 -0.8903 30 1 0.8534 -5.0450 0.8897 31 1 3.3860 -5.9233 0.0008 32 1 4.7098 -7.2531 -0.0095 33 1 5.2953 -12.6097 0.4254 34 1 7.4071 -10.2925 0.3396 35 1 7.7473 -12.0545 0.7648 36 1 6.9131 -12.7679 -1.5220 37 1 6.5726 -11.0062 -1.9478 38 1 1.4427 -10.0464 -0.0024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456157054.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:34 Heat of formation + Delta-G solvation = 1.401659 kcal Electronic energy + Delta-G solvation = -19550.400171 eV Core-core repulsion = 16392.446839 eV Total energy + Delta-G solvation = -3157.953332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.46672 -40.58636 -37.97829 -37.05469 -35.40755 -34.88741 -33.57926 -32.54514 -28.82513 -26.91349 -25.78165 -24.87519 -23.23240 -22.77667 -22.34049 -21.59620 -19.12704 -18.99383 -18.42136 -17.76405 -16.89472 -16.84365 -16.42887 -16.23542 -15.89022 -15.45968 -15.26788 -15.04668 -14.65014 -14.24729 -13.76688 -13.54397 -13.34256 -12.75125 -12.71968 -12.54891 -12.42037 -12.35426 -12.09062 -11.92886 -11.66702 -11.62632 -11.42104 -11.27266 -11.02898 -10.54465 -10.53781 -10.46135 -10.15705 -8.18741 -6.29986 -0.78021 -0.14069 1.42611 1.45177 1.52967 1.61223 1.93565 2.42829 2.47241 2.60164 2.82458 3.12706 3.15247 3.29309 3.54167 3.76616 3.85807 3.93051 4.08361 4.15652 4.21879 4.31571 4.55015 4.61404 4.80199 4.92153 4.93855 4.94728 5.08350 5.17385 5.18320 5.32104 5.32958 5.52837 5.68859 5.72071 5.85376 6.22628 6.37319 6.82475 6.87745 7.01902 7.39637 8.93038 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.032578 B = 0.002647 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.282038 B =10573.501450 C =11336.827019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.103 4.103 11 C 0.129 3.871 12 N -0.704 5.704 13 C 0.568 3.432 14 O -0.573 6.573 15 C -0.253 4.253 16 C 0.198 3.802 17 N -0.525 5.525 18 C 0.359 3.641 19 C -0.128 4.128 20 C -0.142 4.142 21 C -0.144 4.144 22 N -0.532 5.532 23 C 0.208 3.792 24 H 0.263 0.737 25 H -0.007 1.007 26 H -0.007 1.007 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.415 0.585 32 H 0.205 0.795 33 H 0.140 0.860 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.465 -22.931 -0.409 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.141 4.141 11 C 0.006 3.994 12 N -0.355 5.355 13 C 0.354 3.646 14 O -0.454 6.454 15 C -0.261 4.261 16 C 0.031 3.969 17 N -0.238 5.238 18 C 0.095 3.905 19 C -0.148 4.148 20 C -0.179 4.179 21 C -0.182 4.182 22 N -0.245 5.245 23 C 0.041 3.959 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.253 0.747 32 H 0.221 0.779 33 H 0.158 0.842 34 H 0.120 0.880 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.106 0.894 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 15.117 -23.712 -0.401 28.123 hybrid contribution -0.737 1.949 0.019 2.083 sum 14.380 -21.763 -0.382 26.087 Atomic orbital electron populations 1.70096 1.07924 1.27830 1.51683 1.26013 0.95726 1.03524 0.94861 0.85492 0.78197 0.78040 0.79265 1.19036 1.21331 1.19025 1.21663 0.93788 0.92005 1.50431 0.91439 1.18943 0.94481 0.92919 0.95157 1.21617 0.98498 0.91581 1.02417 1.21335 0.91794 0.84982 1.01310 1.45828 1.11459 1.04670 1.73577 1.18016 0.87446 0.83000 0.76113 1.90786 1.17652 1.85174 1.51758 1.21611 0.96467 0.96112 1.11906 1.23961 0.87692 1.00084 0.85201 1.68275 1.40008 0.99660 1.15900 1.23004 0.89281 0.91695 0.86568 1.20905 0.89615 0.95620 1.08675 1.23125 0.91838 1.03939 0.99021 1.23089 0.99468 1.04331 0.91354 1.68357 1.03075 1.36918 1.16158 1.23660 1.00977 0.86763 0.84507 0.92849 0.98895 0.98884 0.91084 0.91089 0.92596 0.92610 0.74702 0.77882 0.84187 0.87995 0.85839 0.85588 0.89411 0.79687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.45 13.29 21.45 0.28 -56.17 16 2 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 3 Si 0.97 43.11 29.54 68.60 2.03 45.13 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 7 C -0.54 -29.43 9.11 25.60 0.23 -29.20 16 8 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.71 5.27 30.59 0.16 -3.55 16 11 C 0.13 4.22 5.67 86.38 0.49 4.71 16 12 N -0.70 -17.53 5.51 -466.00 -2.57 -20.10 16 13 C 0.57 15.56 7.79 86.78 0.68 16.24 16 14 O -0.57 -20.38 16.45 -3.88 -0.06 -20.44 16 15 C -0.25 -5.58 5.91 -19.91 -0.12 -5.70 16 16 C 0.20 3.51 10.81 85.06 0.92 4.43 16 17 N -0.52 -10.21 9.32 -186.79 -1.74 -11.95 16 18 C 0.36 7.29 7.31 138.71 1.01 8.30 16 19 C -0.13 -1.84 6.23 -11.54 -0.07 -1.91 16 20 C -0.14 -1.51 10.01 30.60 0.31 -1.20 16 21 C -0.14 -1.55 10.23 30.59 0.31 -1.24 16 22 N -0.53 -12.00 10.31 -186.79 -1.93 -13.92 16 23 C 0.21 4.70 10.88 85.06 0.93 5.62 16 24 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 28 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.41 7.26 6.61 -92.71 -0.61 6.65 16 32 H 0.20 2.16 6.54 -2.91 -0.02 2.14 16 33 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.10 1.32 7.53 -2.39 -0.02 1.30 16 35 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.19 3.92 7.74 -2.91 -0.02 3.90 16 Total: -1.00 -70.82 331.27 1.93 -68.89 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.46 Total: 10.51 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.46 Total: -1.95 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -5.95 Total: -102.14 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.06 Total: -20.44 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -70.82 1.93 -68.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456157054.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.289 kcal (2) G-P(sol) polarization free energy of solvation -70.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds