Wall clock time and date at job start Mon Mar 30 2020 01:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 116.99965 * 2 1 4 4 O 1.20828 * 119.99879 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99890 * 179.97438 * 3 2 1 6 6 C 1.53783 * 113.61012 * 179.97438 * 5 3 2 7 7 C 1.53778 * 87.08032 * 139.98071 * 6 5 3 8 8 N 1.46501 * 113.61500 * 89.11502 * 7 6 5 9 9 C 1.38854 * 120.00183 * 155.00209 * 8 7 6 10 10 C 1.39574 * 119.84093 * 359.72515 * 9 8 7 11 11 C 1.36343 * 120.16106 * 179.72166 * 10 9 8 12 12 C 1.40891 * 119.83398 * 0.54956 * 11 10 9 13 13 C 1.41135 * 120.15327 * 179.70110 * 12 11 10 14 14 H 1.07996 * 120.00081 * 155.10652 * 13 12 11 15 15 C 1.39867 * 120.00145 * 335.11339 * 13 12 11 16 16 N 1.30905 * 119.99810 * 342.12723 * 15 13 12 17 17 Si 1.86801 * 120.00176 * 162.12966 * 15 13 12 18 18 H 1.48493 * 109.46858 * 94.64997 * 17 15 13 19 19 H 1.48496 * 109.47093 * 214.65053 * 17 15 13 20 20 H 1.48501 * 109.47011 * 334.65121 * 17 15 13 21 21 C 1.40882 * 119.68793 * 359.72432 * 12 11 10 22 22 C 1.36335 * 119.84072 * 359.97438 * 21 12 11 23 23 C 1.53774 * 113.61306 * 277.48967 * 5 3 2 24 24 H 1.08989 * 109.47596 * 300.00457 * 1 2 3 25 25 H 1.09002 * 109.47241 * 60.01127 * 1 2 3 26 26 H 1.09006 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.08993 * 112.90702 * 48.75043 * 5 3 2 28 28 H 1.09006 * 113.61327 * 254.52594 * 6 5 3 29 29 H 1.08995 * 113.61812 * 25.43174 * 6 5 3 30 30 H 1.08997 * 113.61376 * 220.01794 * 7 6 5 31 31 H 0.97002 * 120.00190 * 334.99490 * 8 7 6 32 32 H 1.07999 * 119.91882 * 359.97438 * 10 9 8 33 33 H 1.07996 * 120.08228 * 180.27770 * 11 10 9 34 34 H 0.96999 * 120.00182 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.07678 * 179.97438 * 21 12 11 36 36 H 1.08002 * 119.92378 * 179.97438 * 22 21 12 37 37 H 1.09001 * 113.61731 * 334.57423 * 23 5 3 38 38 H 1.09008 * 113.61362 * 105.47226 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1077 2.7142 -0.0001 7 6 5.1805 2.2275 0.9882 8 7 6.3902 1.7182 0.3374 9 6 7.6018 1.7322 1.0155 10 6 7.6646 2.2376 2.3150 11 6 8.8497 2.2493 2.9890 12 6 10.0151 1.7602 2.3662 13 6 11.2466 1.7750 3.0554 14 1 12.0242 1.0754 2.7866 15 6 11.4601 2.6955 4.0866 16 7 10.6938 3.7518 4.1900 17 14 12.8386 2.4176 5.3162 18 1 14.0502 3.1549 4.8763 19 1 12.4170 2.9104 6.6521 20 1 13.1442 0.9667 5.3976 21 6 9.9452 1.2569 1.0523 22 6 8.7521 1.2457 0.3926 23 6 4.1905 1.1239 1.3978 24 1 -0.3634 0.5138 0.8898 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 4.0249 0.6358 -0.7539 28 1 4.5112 3.0285 -0.9627 29 1 3.4170 3.4407 0.4280 30 1 5.3952 2.9395 1.7851 31 1 6.3448 1.3710 -0.5672 32 1 6.7714 2.6166 2.7894 33 1 8.8959 2.6365 3.9961 34 1 10.8420 4.3904 4.9049 35 1 10.8347 0.8809 0.5687 36 1 8.6971 0.8606 -0.6149 37 1 3.5225 1.4154 2.2083 38 1 4.6608 0.1546 1.5636 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462065010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:55 Heat of formation + Delta-G solvation = -40.504385 kcal Electronic energy + Delta-G solvation = -20211.221349 eV Core-core repulsion = 17019.158084 eV Total energy + Delta-G solvation = -3192.063265 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.92092 -38.99762 -37.43356 -36.44598 -34.11471 -32.28356 -29.49725 -28.89843 -28.12122 -25.89123 -25.72498 -24.19073 -21.94536 -20.88225 -20.38161 -18.71630 -18.01549 -17.23275 -17.04731 -16.52667 -15.91453 -15.45392 -14.93923 -14.40152 -14.12670 -13.74745 -13.43593 -13.00684 -12.78297 -12.61068 -12.48290 -12.27648 -12.07729 -11.83022 -11.63570 -11.32272 -11.02018 -11.01281 -10.85924 -10.66614 -10.65621 -10.41128 -10.20480 -9.72474 -9.29123 -9.21194 -8.58387 -7.50880 -6.66001 -6.42470 -4.05255 2.04077 2.57304 2.89777 3.09032 3.14628 3.19381 3.32808 4.04548 4.11948 4.32122 4.48352 4.71250 4.77057 4.85575 4.92007 4.97501 5.01525 5.26877 5.61455 5.67918 5.81236 5.84617 5.95091 6.01518 6.14636 6.21311 6.26158 6.35274 6.91516 6.93001 7.18565 7.33965 7.53810 7.59794 7.67575 7.81998 8.13921 8.26599 8.46444 8.66114 8.77604 9.04708 9.13310 10.35832 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.042644 B = 0.003062 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.442044 B = 9140.663296 C = 9329.954608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.471 3.529 4 O -0.510 6.510 5 C -0.109 4.109 6 C -0.130 4.130 7 C 0.149 3.851 8 N -0.740 5.740 9 C 0.087 3.913 10 C -0.161 4.161 11 C -0.126 4.126 12 C 0.077 3.923 13 C -0.467 4.467 14 H 0.073 0.927 15 C 0.075 3.925 16 N -0.806 5.806 17 Si 0.902 3.098 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.189 4.189 22 C -0.155 4.155 23 C -0.143 4.143 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.385 0.615 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.276 0.724 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.753 -4.667 -5.511 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.315 3.685 4 O -0.398 6.398 5 C -0.128 4.128 6 C -0.169 4.169 7 C 0.040 3.960 8 N -0.373 5.373 9 C -0.009 4.009 10 C -0.183 4.183 11 C -0.146 4.146 12 C 0.074 3.926 13 C -0.498 4.498 14 H 0.091 0.909 15 C -0.141 4.141 16 N -0.433 5.433 17 Si 0.727 3.273 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.209 4.209 22 C -0.177 4.177 23 C -0.183 4.183 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.118 0.882 27 H 0.139 0.861 28 H 0.098 0.902 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.218 0.782 32 H 0.108 0.892 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.062 -4.078 -5.217 16.453 hybrid contribution 0.250 -0.149 0.152 0.328 sum -14.812 -4.227 -5.065 16.215 Atomic orbital electron populations 1.23250 0.76758 1.03577 1.02428 1.86553 1.23141 1.33814 1.83988 1.23886 0.92014 0.81089 0.71530 1.90643 1.67114 1.36473 1.45542 1.22636 0.86250 1.01532 1.02425 1.23424 0.97876 0.93962 1.01596 1.21397 0.84504 0.94618 0.95494 1.43564 1.04438 1.72799 1.16533 1.17309 0.84824 1.05447 0.93325 1.20140 0.97854 1.06170 0.94105 1.20941 0.90921 1.02798 0.99891 1.17508 0.93091 0.91559 0.90463 1.19373 1.00012 1.15762 1.14607 0.90931 1.25803 0.96963 0.93752 0.97544 1.69854 1.36543 1.07786 1.29166 0.86410 0.81199 0.79759 0.79935 1.19851 1.20274 1.18661 1.20541 0.95566 1.09422 0.95386 1.19797 0.92601 1.06852 0.98426 1.23600 0.98612 1.02716 0.93351 0.91967 0.92034 0.88198 0.86055 0.90188 0.88023 0.88436 0.78198 0.89161 0.86413 0.91299 0.89041 0.89576 0.89569 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -4.02 10.56 -39.25 -0.41 -4.44 16 3 C 0.47 5.82 7.48 36.01 0.27 6.09 16 4 O -0.51 -7.44 15.65 -18.75 -0.29 -7.73 16 5 C -0.11 -1.23 4.14 -90.96 -0.38 -1.60 16 6 C -0.13 -1.54 7.15 -25.92 -0.19 -1.72 16 7 C 0.15 2.06 4.12 -67.10 -0.28 1.79 16 8 N -0.74 -11.90 5.41 -51.23 -0.28 -12.18 16 9 C 0.09 1.81 6.67 -83.69 -0.56 1.25 16 10 C -0.16 -3.65 9.19 -39.77 -0.37 -4.01 16 11 C -0.13 -3.23 8.63 -39.26 -0.34 -3.57 16 12 C 0.08 2.04 5.57 -106.79 -0.59 1.45 16 13 C -0.47 -12.55 9.03 -37.87 -0.34 -12.89 16 14 H 0.07 1.89 7.91 -52.49 -0.41 1.47 16 15 C 0.07 1.91 5.13 -17.34 -0.09 1.82 16 16 N -0.81 -21.22 10.98 55.54 0.61 -20.61 16 17 Si 0.90 19.07 29.60 -169.99 -5.03 14.04 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 21 C -0.19 -4.60 9.74 -39.27 -0.38 -4.98 16 22 C -0.15 -3.37 9.82 -39.77 -0.39 -3.76 16 23 C -0.14 -1.74 7.43 -25.90 -0.19 -1.93 16 24 H 0.06 0.50 8.13 -51.94 -0.42 0.07 16 25 H 0.06 0.48 8.13 -51.93 -0.42 0.05 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 1.23 7.43 -51.93 -0.39 0.84 16 30 H 0.10 1.47 6.09 -51.93 -0.32 1.16 16 31 H 0.39 5.44 8.70 -40.82 -0.36 5.08 16 32 H 0.09 1.84 6.00 -52.49 -0.32 1.53 16 33 H 0.12 3.15 6.18 -52.49 -0.32 2.83 16 34 H 0.28 6.65 8.30 -40.82 -0.34 6.32 16 35 H 0.09 2.11 8.06 -52.49 -0.42 1.68 16 36 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 37 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 38 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 LS Contribution 321.82 15.07 4.85 4.85 Total: -1.00 -29.32 321.82 -8.36 -37.68 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.05 Total: 9.12 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.76 Total: -20.73 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.33 Total: -32.79 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.71 Total: -12.17 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.32 -8.36 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462065010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.820 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds