Wall clock time and date at job start Mon Mar 30 2020 01:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34226 * 116.99965 * 2 1 4 4 O 1.20828 * 119.99879 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99890 * 179.97438 * 3 2 1 6 6 C 1.53783 * 113.61012 * 179.97438 * 5 3 2 7 7 C 1.53778 * 87.08032 * 139.98071 * 6 5 3 8 8 N 1.46501 * 113.61500 * 89.11502 * 7 6 5 9 9 C 1.38854 * 120.00183 * 155.00209 * 8 7 6 10 10 C 1.39574 * 119.84093 * 359.72515 * 9 8 7 11 11 C 1.36343 * 120.16106 * 179.72166 * 10 9 8 12 12 C 1.40891 * 119.83398 * 0.54956 * 11 10 9 13 13 C 1.41135 * 120.15327 * 179.70110 * 12 11 10 14 14 H 1.07996 * 120.00081 * 155.10652 * 13 12 11 15 15 C 1.39867 * 120.00145 * 335.11339 * 13 12 11 16 16 N 1.30905 * 119.99810 * 342.12723 * 15 13 12 17 17 Si 1.86801 * 120.00176 * 162.12966 * 15 13 12 18 18 H 1.48493 * 109.46858 * 94.64997 * 17 15 13 19 19 H 1.48496 * 109.47093 * 214.65053 * 17 15 13 20 20 H 1.48501 * 109.47011 * 334.65121 * 17 15 13 21 21 C 1.40882 * 119.68793 * 359.72432 * 12 11 10 22 22 C 1.36335 * 119.84072 * 359.97438 * 21 12 11 23 23 C 1.53774 * 113.61306 * 277.48967 * 5 3 2 24 24 H 1.08989 * 109.47596 * 300.00457 * 1 2 3 25 25 H 1.09002 * 109.47241 * 60.01127 * 1 2 3 26 26 H 1.09006 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.08993 * 112.90702 * 48.75043 * 5 3 2 28 28 H 1.09006 * 113.61327 * 254.52594 * 6 5 3 29 29 H 1.08995 * 113.61812 * 25.43174 * 6 5 3 30 30 H 1.08997 * 113.61376 * 220.01794 * 7 6 5 31 31 H 0.97002 * 120.00190 * 334.99490 * 8 7 6 32 32 H 1.07999 * 119.91882 * 359.97438 * 10 9 8 33 33 H 1.07996 * 120.08228 * 180.27770 * 11 10 9 34 34 H 0.96999 * 120.00182 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.07678 * 179.97438 * 21 12 11 36 36 H 1.08002 * 119.92378 * 179.97438 * 22 21 12 37 37 H 1.09001 * 113.61731 * 334.57423 * 23 5 3 38 38 H 1.09008 * 113.61362 * 105.47226 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1077 2.7142 -0.0001 7 6 5.1805 2.2275 0.9882 8 7 6.3902 1.7182 0.3374 9 6 7.6018 1.7322 1.0155 10 6 7.6646 2.2376 2.3150 11 6 8.8497 2.2493 2.9890 12 6 10.0151 1.7602 2.3662 13 6 11.2466 1.7750 3.0554 14 1 12.0242 1.0754 2.7866 15 6 11.4601 2.6955 4.0866 16 7 10.6938 3.7518 4.1900 17 14 12.8386 2.4176 5.3162 18 1 14.0502 3.1549 4.8763 19 1 12.4170 2.9104 6.6521 20 1 13.1442 0.9667 5.3976 21 6 9.9452 1.2569 1.0523 22 6 8.7521 1.2457 0.3926 23 6 4.1905 1.1239 1.3978 24 1 -0.3634 0.5138 0.8898 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 4.0249 0.6358 -0.7539 28 1 4.5112 3.0285 -0.9627 29 1 3.4170 3.4407 0.4280 30 1 5.3952 2.9395 1.7851 31 1 6.3448 1.3710 -0.5672 32 1 6.7714 2.6166 2.7894 33 1 8.8959 2.6365 3.9961 34 1 10.8420 4.3904 4.9049 35 1 10.8347 0.8809 0.5687 36 1 8.6971 0.8606 -0.6149 37 1 3.5225 1.4154 2.2083 38 1 4.6608 0.1546 1.5636 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462065010.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:54 Heat of formation + Delta-G solvation = -56.306936 kcal Electronic energy + Delta-G solvation = -20211.906599 eV Core-core repulsion = 17019.158084 eV Total energy + Delta-G solvation = -3192.748515 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.88517 -40.22110 -38.99506 -37.43168 -35.83406 -33.93463 -31.32461 -30.38130 -29.19031 -27.01852 -26.71552 -25.85454 -23.36547 -22.47491 -21.79126 -19.92050 -19.13326 -19.01013 -18.09266 -17.50776 -17.26432 -16.76532 -16.57687 -15.79533 -15.23892 -15.11250 -14.49911 -14.45407 -14.35051 -13.98626 -13.78562 -13.52819 -13.39648 -13.27965 -12.88574 -12.75754 -12.70250 -12.46047 -12.26584 -11.83049 -11.73797 -11.66068 -11.54395 -11.29187 -11.08121 -10.94698 -10.26972 -9.36137 -8.53069 -8.13850 -5.98496 1.09115 1.13585 1.22585 1.41465 1.53770 1.60678 1.76370 2.28836 2.80248 2.86504 3.36688 3.49176 3.80506 3.86705 3.98091 4.12688 4.29164 4.31337 4.41545 4.55225 4.65932 4.69373 4.73672 4.86122 4.93427 5.01985 5.06004 5.12122 5.24764 5.33475 5.35259 5.48512 5.73880 5.85503 6.00236 6.22281 6.42714 6.68890 6.69605 6.90221 7.11270 7.18130 7.35302 8.50042 Molecular weight = 275.13amu Principal moments of inertia in cm(-1) A = 0.042644 B = 0.003062 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.442044 B = 9140.663296 C = 9329.954608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.474 3.526 4 O -0.537 6.537 5 C -0.100 4.100 6 C -0.119 4.119 7 C 0.136 3.864 8 N -0.727 5.727 9 C 0.114 3.886 10 C -0.173 4.173 11 C -0.145 4.145 12 C 0.035 3.965 13 C -0.506 4.506 14 H 0.067 0.933 15 C 0.032 3.968 16 N -0.841 5.841 17 Si 0.974 3.026 18 H -0.266 1.266 19 H -0.269 1.269 20 H -0.261 1.261 21 C -0.198 4.198 22 C -0.162 4.162 23 C -0.135 4.135 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.130 0.870 27 H 0.141 0.859 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.400 0.600 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.282 0.718 35 H 0.096 0.904 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.130 -5.542 -6.566 18.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.319 3.681 4 O -0.426 6.426 5 C -0.119 4.119 6 C -0.157 4.157 7 C 0.028 3.972 8 N -0.361 5.361 9 C 0.015 3.985 10 C -0.195 4.195 11 C -0.165 4.165 12 C 0.032 3.968 13 C -0.537 4.537 14 H 0.085 0.915 15 C -0.180 4.180 16 N -0.470 5.470 17 Si 0.796 3.204 18 H -0.191 1.191 19 H -0.194 1.194 20 H -0.185 1.185 21 C -0.218 4.218 22 C -0.184 4.184 23 C -0.174 4.174 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.148 0.852 27 H 0.159 0.841 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.235 0.765 32 H 0.126 0.874 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.138 0.862 37 H 0.111 0.889 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -16.490 -4.974 -6.308 18.342 hybrid contribution 0.442 0.078 0.336 0.561 sum -16.047 -4.896 -5.972 17.809 Atomic orbital electron populations 1.23546 0.75027 1.05646 1.02486 1.86537 1.24888 1.33086 1.83504 1.23999 0.92320 0.81028 0.70799 1.90639 1.67762 1.37355 1.46888 1.22623 0.85848 1.01270 1.02138 1.23299 0.96648 0.94447 1.01303 1.21538 0.84237 0.95386 0.96046 1.43519 1.03524 1.72097 1.16973 1.17377 0.86353 1.02267 0.92493 1.20319 0.97528 1.06527 0.95080 1.20867 0.92088 1.04024 0.99527 1.17829 0.93527 0.93535 0.91866 1.19592 1.00518 1.16876 1.16730 0.91497 1.26595 0.99534 0.93029 0.98862 1.69918 1.38417 1.08571 1.30054 0.85317 0.78060 0.79534 0.77488 1.19100 1.19362 1.18541 1.20756 0.97022 1.09097 0.94898 1.20100 0.91852 1.06598 0.99811 1.23490 0.97976 1.01626 0.94344 0.92106 0.91842 0.85207 0.84145 0.89143 0.88219 0.89776 0.76452 0.87359 0.88506 0.90815 0.88615 0.86178 0.88937 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.36 -7.24 10.56 -51.37 -0.54 -7.78 16 3 C 0.47 10.56 7.48 71.24 0.53 11.09 16 4 O -0.54 -14.68 15.65 21.96 0.34 -14.33 16 5 C -0.10 -1.94 4.14 -11.01 -0.05 -1.98 16 6 C -0.12 -2.48 7.15 31.12 0.22 -2.26 16 7 C 0.14 3.44 4.12 45.53 0.19 3.63 16 8 N -0.73 -21.28 5.41 -316.00 -1.71 -22.99 16 9 C 0.11 4.54 6.67 38.67 0.26 4.80 16 10 C -0.17 -7.80 9.19 22.15 0.20 -7.59 16 11 C -0.14 -7.70 8.63 22.48 0.19 -7.51 16 12 C 0.04 1.94 5.57 -21.27 -0.12 1.82 16 13 C -0.51 -28.33 9.03 23.38 0.21 -28.12 16 14 H 0.07 3.64 7.91 -2.91 -0.02 3.62 16 15 C 0.03 1.67 5.13 85.23 0.44 2.10 16 16 N -0.84 -45.88 10.98 21.82 0.24 -45.64 16 17 Si 0.97 40.08 29.60 68.60 2.03 42.11 16 18 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 19 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 21 C -0.20 -9.68 9.74 22.47 0.22 -9.46 16 22 C -0.16 -6.75 9.82 22.15 0.22 -6.53 16 23 C -0.13 -2.94 7.43 31.13 0.23 -2.71 16 24 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 25 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 26 H 0.13 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.10 2.20 7.43 -2.39 -0.02 2.18 16 30 H 0.08 2.41 6.09 -2.39 -0.01 2.39 16 31 H 0.40 9.70 8.70 -92.71 -0.81 8.90 16 32 H 0.11 4.39 6.00 -2.91 -0.02 4.37 16 33 H 0.10 5.46 6.18 -2.91 -0.02 5.44 16 34 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 35 H 0.10 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 37 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 38 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -64.89 321.82 4.58 -60.31 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.27 Total: 29.47 kcal Atomic # 6 Polarization: -45.10 SS G_CDS: 3.95 Total: -41.15 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -1.47 Total: -68.63 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.20 Total: -22.11 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -64.89 4.58 -60.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462065010.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.004 kcal (2) G-P(sol) polarization free energy of solvation -64.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds