Wall clock time and date at job start Mon Mar 30 2020 01:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99615 * 2 1 4 4 H 1.48498 * 109.46764 * 239.99570 * 3 2 1 5 5 H 1.48494 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46783 * 119.99954 * 3 2 1 7 7 C 1.38806 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00486 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00609 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46705 * 34.99259 * 10 9 7 12 12 C 1.52996 * 109.47400 * 154.99951 * 10 9 7 13 13 N 1.46501 * 109.46867 * 304.99816 * 12 10 9 14 14 C 1.34780 * 119.99775 * 180.02562 * 13 12 10 15 15 O 1.21506 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.48175 * 119.99946 * 180.02562 * 14 13 12 17 17 C 1.39302 * 119.72217 * 179.97438 * 16 14 13 18 18 C 1.38596 * 119.05879 * 179.97438 * 17 16 14 19 19 C 1.38630 * 118.48552 * 0.02562 * 18 17 16 20 20 C 1.38558 * 119.35539 * 0.25409 * 19 18 17 21 21 N 1.31532 * 120.90059 * 359.49177 * 20 19 18 22 22 C 1.52997 * 109.47012 * 275.00122 * 10 9 7 23 23 C 1.53001 * 117.50216 * 128.74489 * 22 10 9 24 24 C 1.52997 * 117.50447 * 60.08221 * 22 10 9 25 25 H 0.97000 * 119.99993 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99808 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47139 * 185.00313 * 12 10 9 28 28 H 1.08996 * 109.47421 * 65.00156 * 12 10 9 29 29 H 0.97001 * 120.00408 * 0.02562 * 13 12 10 30 30 H 1.07999 * 120.47505 * 0.02670 * 17 16 14 31 31 H 1.07999 * 120.75338 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.31909 * 179.97438 * 19 18 17 33 33 H 1.07995 * 119.54967 * 179.74631 * 20 19 18 34 34 H 1.09002 * 115.55228 * 274.41194 * 22 10 9 35 35 H 1.09000 * 117.49674 * 359.97438 * 23 22 10 36 36 H 1.09000 * 117.49882 * 145.02105 * 23 22 10 37 37 H 1.09001 * 117.50552 * 214.98511 * 24 22 10 38 38 H 1.09010 * 117.49553 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9689 -3.5504 0.5899 12 6 1.1810 -4.7521 0.6101 13 7 0.7344 -4.3354 1.9418 14 6 -0.0546 -5.1477 2.6727 15 8 -0.3951 -6.2257 2.2275 16 6 -0.5067 -4.7261 4.0194 17 6 -1.3225 -5.5699 4.7696 18 6 -1.7368 -5.1620 6.0277 19 6 -1.3211 -3.9235 6.4915 20 6 -0.5144 -3.1333 5.6885 21 7 -0.1317 -3.5472 4.5001 22 6 2.4220 -4.0356 -1.4364 23 6 3.8822 -4.3891 -1.7257 24 6 3.3028 -3.0622 -2.2223 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 0.0005 27 1 1.7559 -5.6745 0.6919 28 1 0.3134 -4.9201 -0.0280 29 1 1.0066 -3.4750 2.2975 30 1 -1.6270 -6.5288 4.3770 31 1 -2.3692 -5.7946 6.6329 32 1 -1.6268 -3.5760 7.4673 33 1 -0.1920 -2.1662 6.0450 34 1 1.6541 -4.5774 -1.9886 35 1 4.5837 -4.3515 -0.8924 36 1 4.0749 -5.1633 -2.4685 37 1 3.1146 -2.9638 -3.2914 38 1 3.6227 -2.1516 -1.7156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479997748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:40 Heat of formation + Delta-G solvation = 37.730006 kcal Electronic energy + Delta-G solvation = -20704.923616 eV Core-core repulsion = 17548.545600 eV Total energy + Delta-G solvation = -3156.378016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44735 -38.76753 -37.45151 -34.66271 -33.41000 -32.58435 -31.49571 -30.72396 -28.03690 -24.85673 -23.61247 -23.31354 -22.18671 -21.66662 -20.33890 -19.60194 -18.06382 -17.09239 -16.65898 -15.99894 -15.26307 -15.21613 -14.95327 -14.80463 -14.35452 -13.99838 -13.71214 -13.39850 -13.21286 -13.08655 -12.81577 -12.04815 -12.00170 -11.34831 -11.12989 -10.84757 -10.82041 -10.68708 -10.13967 -10.09361 -10.02865 -9.89013 -9.58234 -9.37896 -9.25843 -9.23953 -8.93391 -8.57774 -7.00229 -5.76533 -3.06018 0.67790 1.18137 2.95071 3.42519 3.45159 3.48224 3.48744 3.96980 4.27156 4.44348 4.62887 4.72162 4.87405 4.92101 5.01934 5.25795 5.40453 5.50740 5.54577 5.64221 5.67717 5.77423 5.88703 5.93824 6.00345 6.05913 6.09247 6.19933 6.42870 6.53326 6.57105 6.62657 6.79816 6.91803 7.00497 7.68465 7.70545 8.05390 8.39814 8.54251 9.52004 10.06165 10.42235 11.45259 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.005517 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.290986 B = 5074.175012 C = 6653.547461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.715 5.715 10 C 0.193 3.807 11 H 0.056 0.944 12 C 0.116 3.884 13 N -0.688 5.688 14 C 0.564 3.436 15 O -0.550 6.550 16 C 0.086 3.914 17 C -0.117 4.117 18 C -0.086 4.086 19 C -0.157 4.157 20 C 0.100 3.900 21 N -0.448 5.448 22 C -0.159 4.159 23 C -0.196 4.196 24 C -0.156 4.156 25 H 0.255 0.745 26 H 0.386 0.614 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.422 0.578 30 H 0.146 0.854 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.163 0.837 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.098 -9.529 9.933 13.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.205 4.205 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.356 5.356 10 C 0.082 3.918 11 H 0.074 0.926 12 C -0.008 4.008 13 N -0.339 5.339 14 C 0.348 3.652 15 O -0.428 6.428 16 C -0.053 4.053 17 C -0.138 4.138 18 C -0.112 4.112 19 C -0.177 4.177 20 C -0.059 4.059 21 N -0.160 5.160 22 C -0.181 4.181 23 C -0.234 4.234 24 C -0.193 4.193 25 H 0.065 0.935 26 H 0.220 0.780 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.260 0.740 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.180 0.820 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.326 -9.589 9.060 13.196 hybrid contribution -0.363 0.942 0.557 1.153 sum -0.037 -8.647 9.617 12.933 Atomic orbital electron populations 1.69656 1.05049 1.25701 1.57200 1.24707 0.95408 0.97514 1.02853 0.86338 0.78563 0.83877 0.77803 1.21339 1.21819 1.21300 1.19093 0.90749 0.83842 1.43066 0.91218 1.42424 1.05813 0.99366 1.88021 1.20049 0.94366 0.86129 0.91244 0.92643 1.21684 0.98762 0.97728 0.82665 1.45871 1.48747 1.22024 1.17275 1.17877 0.79164 0.84289 0.83853 1.90737 1.57915 1.22530 1.71660 1.21295 0.97107 0.91289 0.95577 1.22121 0.96349 1.01047 0.94287 1.21591 0.98096 0.96177 0.95297 1.22368 0.98628 0.95300 1.01406 1.22872 0.94114 0.99734 0.89221 1.67670 1.20593 1.13765 1.13923 1.23030 0.92149 1.03083 0.99795 1.22964 0.97300 0.99818 1.03345 1.22780 1.03374 0.94050 0.99071 0.93506 0.78030 0.91402 0.91543 0.73959 0.83582 0.84319 0.84422 0.82026 0.89119 0.89542 0.90101 0.90240 0.87693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.90 21.82 29.55 -169.99 -5.02 16.80 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.14 8.63 -15.06 -0.13 -6.27 16 8 H 0.07 1.76 6.91 -52.49 -0.36 1.40 16 9 N -0.72 -16.81 4.54 -53.43 -0.24 -17.05 16 10 C 0.19 3.68 2.70 -67.94 -0.18 3.50 16 11 H 0.06 1.08 7.84 -51.93 -0.41 0.67 16 12 C 0.12 2.06 5.22 -4.04 -0.02 2.04 16 13 N -0.69 -12.62 5.38 -61.15 -0.33 -12.95 16 14 C 0.56 10.26 7.81 -12.18 -0.10 10.17 16 15 O -0.55 -10.89 16.32 5.36 0.09 -10.80 16 16 C 0.09 1.37 6.75 -83.01 -0.56 0.81 16 17 C -0.12 -1.52 9.63 -39.05 -0.38 -1.89 16 18 C -0.09 -0.85 10.17 -39.30 -0.40 -1.24 16 19 C -0.16 -1.50 10.11 -39.32 -0.40 -1.90 16 20 C 0.10 1.22 11.18 -17.56 -0.20 1.02 16 21 N -0.45 -7.09 9.54 -9.80 -0.09 -7.18 16 22 C -0.16 -2.81 5.36 -90.62 -0.49 -3.29 16 23 C -0.20 -3.02 10.18 -26.69 -0.27 -3.29 16 24 C -0.16 -2.79 9.78 -26.70 -0.26 -3.05 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.39 9.97 7.80 -40.82 -0.32 9.65 16 27 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.42 8.21 7.47 -40.82 -0.30 7.90 16 30 H 0.15 1.77 7.64 -52.49 -0.40 1.37 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.09 1.56 8.11 -51.93 -0.42 1.14 16 35 H 0.09 1.28 8.05 -51.93 -0.42 0.86 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.10 2.11 6.23 -51.92 -0.32 1.79 16 LS Contribution 327.83 15.07 4.94 4.94 Total: -1.00 -30.76 327.83 -8.46 -39.22 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: -5.05 Total: 17.29 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -3.47 Total: -3.72 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: 0.06 Total: -63.72 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.76 -8.46 -39.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479997748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.947 kcal (2) G-P(sol) polarization free energy of solvation -30.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds