Wall clock time and date at job start Mon Mar 30 2020 01:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99615 * 2 1 4 4 H 1.48498 * 109.46764 * 239.99570 * 3 2 1 5 5 H 1.48494 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46783 * 119.99954 * 3 2 1 7 7 C 1.38806 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99825 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00486 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00609 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.46705 * 34.99259 * 10 9 7 12 12 C 1.52996 * 109.47400 * 154.99951 * 10 9 7 13 13 N 1.46501 * 109.46867 * 304.99816 * 12 10 9 14 14 C 1.34780 * 119.99775 * 180.02562 * 13 12 10 15 15 O 1.21506 * 120.00220 * 0.02562 * 14 13 12 16 16 C 1.48175 * 119.99946 * 180.02562 * 14 13 12 17 17 C 1.39302 * 119.72217 * 179.97438 * 16 14 13 18 18 C 1.38596 * 119.05879 * 179.97438 * 17 16 14 19 19 C 1.38630 * 118.48552 * 0.02562 * 18 17 16 20 20 C 1.38558 * 119.35539 * 0.25409 * 19 18 17 21 21 N 1.31532 * 120.90059 * 359.49177 * 20 19 18 22 22 C 1.52997 * 109.47012 * 275.00122 * 10 9 7 23 23 C 1.53001 * 117.50216 * 128.74489 * 22 10 9 24 24 C 1.52997 * 117.50447 * 60.08221 * 22 10 9 25 25 H 0.97000 * 119.99993 * 0.02562 * 1 2 3 26 26 H 0.97005 * 119.99808 * 359.97438 * 9 7 2 27 27 H 1.08997 * 109.47139 * 185.00313 * 12 10 9 28 28 H 1.08996 * 109.47421 * 65.00156 * 12 10 9 29 29 H 0.97001 * 120.00408 * 0.02562 * 13 12 10 30 30 H 1.07999 * 120.47505 * 0.02670 * 17 16 14 31 31 H 1.07999 * 120.75338 * 180.02562 * 18 17 16 32 32 H 1.08002 * 120.31909 * 179.97438 * 19 18 17 33 33 H 1.07995 * 119.54967 * 179.74631 * 20 19 18 34 34 H 1.09002 * 115.55228 * 274.41194 * 22 10 9 35 35 H 1.09000 * 117.49674 * 359.97438 * 23 22 10 36 36 H 1.09000 * 117.49882 * 145.02105 * 23 22 10 37 37 H 1.09001 * 117.50552 * 214.98511 * 24 22 10 38 38 H 1.09010 * 117.49553 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9689 -3.5504 0.5899 12 6 1.1810 -4.7521 0.6101 13 7 0.7344 -4.3354 1.9418 14 6 -0.0546 -5.1477 2.6727 15 8 -0.3951 -6.2257 2.2275 16 6 -0.5067 -4.7261 4.0194 17 6 -1.3225 -5.5699 4.7696 18 6 -1.7368 -5.1620 6.0277 19 6 -1.3211 -3.9235 6.4915 20 6 -0.5144 -3.1333 5.6885 21 7 -0.1317 -3.5472 4.5001 22 6 2.4220 -4.0356 -1.4364 23 6 3.8822 -4.3891 -1.7257 24 6 3.3028 -3.0622 -2.2223 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 0.0005 27 1 1.7559 -5.6745 0.6919 28 1 0.3134 -4.9201 -0.0280 29 1 1.0066 -3.4750 2.2975 30 1 -1.6270 -6.5288 4.3770 31 1 -2.3692 -5.7946 6.6329 32 1 -1.6268 -3.5760 7.4673 33 1 -0.1920 -2.1662 6.0450 34 1 1.6541 -4.5774 -1.9886 35 1 4.5837 -4.3515 -0.8924 36 1 4.0749 -5.1633 -2.4685 37 1 3.1146 -2.9638 -3.2914 38 1 3.6227 -2.1516 -1.7156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479997748.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:40 Heat of formation + Delta-G solvation = 16.924095 kcal Electronic energy + Delta-G solvation = -20705.825828 eV Core-core repulsion = 17548.545600 eV Total energy + Delta-G solvation = -3157.280228 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.55357 -40.06159 -38.94119 -36.14149 -35.19372 -33.61443 -32.75468 -32.24592 -29.70444 -26.21216 -25.18666 -24.42703 -23.56598 -23.01191 -21.71877 -21.05296 -19.52109 -18.82049 -17.76148 -16.99312 -16.87356 -16.50576 -16.32689 -16.15974 -15.79671 -15.48818 -15.12764 -14.86669 -14.59059 -14.39798 -13.98481 -13.65506 -12.95686 -12.90692 -12.87602 -12.66604 -12.42842 -12.25819 -12.02424 -11.72719 -11.44148 -10.99455 -10.93493 -10.90728 -10.77434 -10.45312 -10.28897 -9.97276 -8.98658 -7.86630 -5.14604 -0.32587 0.29890 1.49916 1.51404 1.56894 1.72261 2.14838 2.59130 2.91270 3.08141 3.19875 3.49944 3.77952 3.85475 3.99062 3.99767 4.08615 4.12787 4.18092 4.33543 4.39361 4.50548 4.57992 4.65903 4.79311 4.82968 4.90821 5.08925 5.13840 5.16412 5.17176 5.41043 5.44364 5.49730 5.61976 5.67682 6.32073 6.44400 6.85582 7.13695 7.40101 8.10811 8.36565 9.36170 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014450 B = 0.005517 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.290986 B = 5074.175012 C = 6653.547461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.071 4.071 3 Si 0.962 3.038 4 H -0.281 1.281 5 H -0.302 1.302 6 H -0.279 1.279 7 C -0.219 4.219 8 H 0.076 0.924 9 N -0.723 5.723 10 C 0.197 3.803 11 H 0.055 0.945 12 C 0.124 3.876 13 N -0.694 5.694 14 C 0.560 3.440 15 O -0.575 6.575 16 C 0.048 3.952 17 C -0.121 4.121 18 C -0.077 4.077 19 C -0.134 4.134 20 C 0.082 3.918 21 N -0.486 5.486 22 C -0.173 4.173 23 C -0.161 4.161 24 C -0.173 4.173 25 H 0.247 0.753 26 H 0.371 0.629 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.415 0.585 30 H 0.148 0.852 31 H 0.181 0.819 32 H 0.183 0.817 33 H 0.181 0.819 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.469 -10.403 11.611 15.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.263 4.263 3 Si 0.793 3.207 4 H -0.208 1.208 5 H -0.228 1.228 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.362 5.362 10 C 0.088 3.912 11 H 0.073 0.927 12 C 0.000 4.000 13 N -0.343 5.343 14 C 0.346 3.654 15 O -0.456 6.456 16 C -0.089 4.089 17 C -0.142 4.142 18 C -0.102 4.102 19 C -0.153 4.153 20 C -0.078 4.078 21 N -0.198 5.198 22 C -0.194 4.194 23 C -0.198 4.198 24 C -0.210 4.210 25 H 0.056 0.944 26 H 0.203 0.797 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.253 0.747 30 H 0.165 0.835 31 H 0.199 0.801 32 H 0.200 0.800 33 H 0.198 0.802 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.946 -10.506 10.730 15.047 hybrid contribution -0.529 1.140 0.137 1.264 sum 0.417 -9.365 10.867 14.352 Atomic orbital electron populations 1.69819 1.06487 1.25609 1.59934 1.25394 0.96083 1.00524 1.04323 0.85375 0.77208 0.80139 0.78019 1.20781 1.22840 1.20523 1.19409 0.91076 0.84622 1.40001 0.90571 1.42529 1.05204 1.00421 1.88065 1.20146 0.93945 0.84710 0.92433 0.92700 1.21606 0.98236 0.97781 0.82417 1.45904 1.49154 1.21813 1.17431 1.18352 0.78427 0.83806 0.84847 1.90695 1.58823 1.23411 1.72622 1.21053 0.99879 0.92753 0.95174 1.22289 0.95776 1.00694 0.95448 1.22085 0.97429 0.96683 0.94045 1.22841 0.95925 0.94236 1.02331 1.23386 0.94741 1.01032 0.88599 1.67543 1.22147 1.14142 1.15989 1.22897 0.94099 1.04044 0.98401 1.23038 0.95000 0.98315 1.03459 1.22734 1.04726 0.94279 0.99298 0.94449 0.79692 0.89714 0.92617 0.74733 0.83453 0.80132 0.79987 0.80206 0.88630 0.88674 0.87327 0.89471 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.57 13.06 21.65 0.28 -58.28 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.96 45.59 29.55 68.60 2.03 47.62 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 7 C -0.22 -11.53 8.63 84.03 0.73 -10.80 16 8 H 0.08 3.85 6.91 -2.91 -0.02 3.83 16 9 N -0.72 -34.77 4.54 -322.96 -1.47 -36.24 16 10 C 0.20 7.54 2.70 44.99 0.12 7.67 16 11 H 0.06 2.12 7.84 -2.39 -0.02 2.10 16 12 C 0.12 4.47 5.22 86.38 0.45 4.92 16 13 N -0.69 -26.38 5.38 -465.67 -2.50 -28.89 16 14 C 0.56 21.11 7.81 86.88 0.68 21.79 16 15 O -0.57 -23.44 16.32 -3.74 -0.06 -23.51 16 16 C 0.05 1.57 6.75 41.91 0.28 1.86 16 17 C -0.12 -3.02 9.63 22.61 0.22 -2.80 16 18 C -0.08 -1.26 10.17 22.45 0.23 -1.03 16 19 C -0.13 -2.07 10.11 22.44 0.23 -1.84 16 20 C 0.08 1.88 11.18 84.81 0.95 2.83 16 21 N -0.49 -15.56 9.54 -184.91 -1.76 -17.32 16 22 C -0.17 -5.96 5.36 -10.80 -0.06 -6.02 16 23 C -0.16 -4.52 10.18 30.62 0.31 -4.20 16 24 C -0.17 -6.04 9.78 30.62 0.30 -5.74 16 25 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 26 H 0.37 19.95 7.80 -92.70 -0.72 19.22 16 27 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.42 16.91 7.47 -92.71 -0.69 16.21 16 30 H 0.15 3.52 7.64 -2.91 -0.02 3.50 16 31 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 32 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 33 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.10 3.21 8.11 -2.39 -0.02 3.19 16 35 H 0.09 2.54 8.05 -2.39 -0.02 2.52 16 36 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.08 3.20 6.23 -2.38 -0.01 3.18 16 Total: -1.00 -69.09 327.83 1.09 -68.01 By element: Atomic # 1 Polarization: 45.84 SS G_CDS: -0.33 Total: 45.51 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 4.90 Total: 3.10 kcal Atomic # 7 Polarization: -135.28 SS G_CDS: -5.45 Total: -140.73 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.06 Total: -23.51 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -69.09 1.09 -68.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479997748.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.930 kcal (2) G-P(sol) polarization free energy of solvation -69.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds