Wall clock time and date at job start Mon Mar 30 2020 01:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99673 * 186.42530 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 N 1.46504 * 114.39066 * 272.67505 * 11 10 9 13 13 C 1.34778 * 119.99900 * 248.58307 * 12 11 10 14 14 O 1.21282 * 120.00013 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99793 * 180.02562 * 13 12 11 16 16 C 1.53004 * 109.46790 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.46790 * 179.97438 * 16 15 13 18 18 C 1.38668 * 120.41756 * 269.71902 * 17 16 15 19 19 C 1.38630 * 118.41582 * 179.78238 * 18 17 16 20 20 C 1.38227 * 119.16453 * 0.51396 * 19 18 17 21 21 N 1.31855 * 120.76010 * 359.72709 * 20 19 18 22 22 C 1.31879 * 121.72691 * 359.97438 * 21 20 19 23 23 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 24 24 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 25 25 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 26 26 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 27 27 H 1.09002 * 114.27057 * 139.79527 * 11 10 9 28 28 H 0.96994 * 120.00205 * 68.58951 * 12 11 10 29 29 H 1.08999 * 109.47054 * 300.00082 * 15 13 12 30 30 H 1.09002 * 109.46665 * 60.00578 * 15 13 12 31 31 H 1.08999 * 109.47114 * 299.99708 * 16 15 13 32 32 H 1.08993 * 109.47093 * 60.00643 * 16 15 13 33 33 H 1.08000 * 120.79566 * 0.02712 * 18 17 16 34 34 H 1.08008 * 120.41635 * 180.22096 * 19 18 17 35 35 H 1.07996 * 119.61935 * 179.74562 * 20 19 18 36 36 H 1.08004 * 119.61813 * 179.97438 * 22 21 20 37 37 H 1.08996 * 113.46819 * 321.85844 * 23 9 7 38 38 H 1.09007 * 113.47055 * 92.24673 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0851 -1.2051 0.1052 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 7 0.8294 -3.9921 -2.4297 13 6 0.0975 -4.6642 -3.3404 14 8 -0.8401 -5.3449 -2.9820 15 6 0.4443 -4.5699 -4.8039 16 6 -0.5348 -5.4202 -5.6158 17 6 -0.1884 -5.3254 -7.0795 18 6 -0.7584 -4.3418 -7.8735 19 6 -0.4068 -4.2898 -9.2135 20 6 0.4856 -5.2201 -9.7124 21 7 1.0042 -6.1449 -8.9286 22 6 0.6972 -6.2207 -7.6483 23 6 1.6717 -3.8136 -0.0623 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6458 -2.9419 0.5050 26 1 -0.5617 -2.1435 -1.1235 27 1 -0.0846 -4.9747 -0.7576 28 1 1.5790 -3.4475 -2.7164 29 1 0.3772 -3.5310 -5.1270 30 1 1.4595 -4.9345 -4.9609 31 1 -0.4681 -6.4591 -5.2929 32 1 -1.5497 -5.0552 -5.4588 33 1 -1.4565 -3.6307 -7.4572 34 1 -0.8285 -3.5348 -9.8606 35 1 0.7615 -5.1889 -10.7560 36 1 1.1420 -6.9925 -7.0375 37 1 2.6415 -4.0509 -0.4996 38 1 1.5408 -4.2432 0.9310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481569522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:10 Heat of formation + Delta-G solvation = 48.781395 kcal Electronic energy + Delta-G solvation = -20140.562820 eV Core-core repulsion = 16984.664028 eV Total energy + Delta-G solvation = -3155.898792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.42557 -39.54430 -37.74467 -34.61336 -33.28323 -32.26545 -31.89558 -30.09489 -27.63476 -25.29053 -24.64624 -23.75881 -23.14259 -21.76100 -20.10765 -19.31511 -17.36301 -16.96064 -16.69745 -16.64289 -15.46276 -15.23613 -15.09454 -14.82939 -14.20439 -13.86397 -13.68635 -13.46347 -13.25145 -13.13245 -12.74412 -12.56052 -12.22066 -11.73511 -11.57411 -11.36938 -11.12476 -10.90375 -10.64396 -10.25594 -10.01716 -9.95747 -9.66669 -9.57731 -9.44656 -9.12542 -8.86136 -8.36713 -6.96516 -5.84250 -3.16569 0.88554 1.07111 2.95217 3.33893 3.39149 3.41459 3.48270 3.67496 4.24467 4.39943 4.59321 4.61746 4.79481 4.81249 4.94439 5.08392 5.15383 5.21857 5.38513 5.41135 5.50450 5.53443 5.59015 5.75269 5.90183 6.03421 6.12542 6.16586 6.20315 6.37445 6.49498 6.50397 6.79725 7.14599 7.27994 7.49402 7.75858 7.89198 8.00458 8.61217 8.96462 9.63401 10.57232 11.33730 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.003485 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.791331 B = 8031.619752 C = 8814.051333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.081 0.919 9 N -0.608 5.608 10 C 0.149 3.851 11 C 0.083 3.917 12 N -0.691 5.691 13 C 0.512 3.488 14 O -0.553 6.553 15 C -0.135 4.135 16 C -0.060 4.060 17 C -0.129 4.129 18 C -0.073 4.073 19 C -0.171 4.171 20 C 0.088 3.912 21 N -0.485 5.485 22 C 0.100 3.900 23 C 0.107 3.893 24 H 0.254 0.746 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.405 0.595 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.043 0.957 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 -9.843 -15.652 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.216 1.216 7 C -0.351 4.351 8 H 0.099 0.901 9 N -0.335 5.335 10 C 0.022 3.978 11 C -0.024 4.024 12 N -0.340 5.340 13 C 0.298 3.702 14 O -0.432 6.432 15 C -0.175 4.175 16 C -0.099 4.099 17 C -0.131 4.131 18 C -0.099 4.099 19 C -0.191 4.191 20 C -0.069 4.069 21 N -0.194 5.194 22 C -0.057 4.057 23 C -0.020 4.020 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.239 0.761 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.061 0.939 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.175 -10.555 -15.725 18.940 hybrid contribution 0.174 2.062 0.478 2.124 sum 0.349 -8.492 -15.247 17.456 Atomic orbital electron populations 1.69859 1.05069 1.25472 1.55846 1.24843 0.95627 0.97658 1.02134 0.86119 0.78678 0.83472 0.77571 1.21589 1.20497 1.21609 1.18941 0.90360 0.81550 1.44242 0.90096 1.45852 1.05517 0.99196 1.82942 1.22483 0.88630 0.89926 0.96727 1.22650 0.99248 1.00211 0.80252 1.45488 1.33424 1.48605 1.06440 1.20497 0.82468 0.79297 0.87899 1.90669 1.29323 1.41523 1.81694 1.21635 1.01189 1.02640 0.92043 1.20274 0.99863 1.01692 0.88053 1.21001 0.98114 0.96568 0.97386 1.21600 0.97853 0.96885 0.93530 1.22167 0.99788 1.00760 0.96341 1.22748 0.93568 0.90788 0.99761 1.67687 1.23823 1.22314 1.05534 1.22732 0.94342 0.97469 0.91137 1.22779 0.95819 0.87341 0.96046 0.93585 0.94442 0.91839 0.88555 0.76071 0.88799 0.88925 0.89714 0.89783 0.84645 0.84826 0.82965 0.82742 0.93863 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.94 11.81 55.49 0.66 -26.28 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.61 29.56 -169.99 -5.02 16.59 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.22 -6.07 10.73 -15.06 -0.16 -6.23 16 8 H 0.08 2.11 7.84 -52.48 -0.41 1.70 16 9 N -0.61 -15.02 3.76 -184.62 -0.69 -15.72 16 10 C 0.15 3.49 7.06 -8.37 -0.06 3.43 16 11 C 0.08 1.56 4.61 -67.68 -0.31 1.25 16 12 N -0.69 -11.44 5.40 -53.48 -0.29 -11.73 16 13 C 0.51 7.92 7.83 -10.98 -0.09 7.84 16 14 O -0.55 -10.31 15.57 5.56 0.09 -10.22 16 15 C -0.13 -1.50 5.68 -27.88 -0.16 -1.66 16 16 C -0.06 -0.63 4.66 -27.88 -0.13 -0.76 16 17 C -0.13 -1.27 5.15 -104.48 -0.54 -1.81 16 18 C -0.07 -0.66 9.86 -39.28 -0.39 -1.05 16 19 C -0.17 -1.41 10.11 -39.44 -0.40 -1.81 16 20 C 0.09 0.80 11.18 -17.55 -0.20 0.61 16 21 N -0.49 -5.41 10.36 -13.25 -0.14 -5.54 16 22 C 0.10 1.02 10.86 -17.55 -0.19 0.83 16 23 C 0.11 2.10 8.44 -8.51 -0.07 2.03 16 24 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.06 1.66 7.57 -51.93 -0.39 1.26 16 27 H 0.10 1.77 7.45 -51.93 -0.39 1.38 16 28 H 0.40 6.37 8.76 -40.82 -0.36 6.01 16 29 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.89 8.05 -51.93 -0.42 0.47 16 32 H 0.08 0.94 8.05 -51.93 -0.42 0.53 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 35 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -33.03 328.45 -8.57 -41.59 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -5.33 Total: 3.95 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -2.79 Total: 2.42 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.47 Total: -59.28 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.03 -8.57 -41.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481569522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.373 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds