Wall clock time and date at job start Mon Mar 30 2020 01:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00228 * 2 1 4 4 H 1.48502 * 109.46990 * 85.01337 * 3 2 1 5 5 H 1.48491 * 109.47236 * 205.01783 * 3 2 1 6 6 H 1.48506 * 109.46777 * 325.01736 * 3 2 1 7 7 C 1.38818 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99673 * 186.42530 * 7 2 1 9 9 N 1.36929 * 120.00175 * 6.43003 * 7 2 1 10 10 C 1.47067 * 136.05682 * 6.12098 * 9 7 2 11 11 C 1.53754 * 87.88776 * 152.96867 * 10 9 7 12 12 N 1.46504 * 114.39066 * 272.67505 * 11 10 9 13 13 C 1.34778 * 119.99900 * 248.58307 * 12 11 10 14 14 O 1.21282 * 120.00013 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99793 * 180.02562 * 13 12 11 16 16 C 1.53004 * 109.46790 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.46790 * 179.97438 * 16 15 13 18 18 C 1.38668 * 120.41756 * 269.71902 * 17 16 15 19 19 C 1.38630 * 118.41582 * 179.78238 * 18 17 16 20 20 C 1.38227 * 119.16453 * 0.51396 * 19 18 17 21 21 N 1.31855 * 120.76010 * 359.72709 * 20 19 18 22 22 C 1.31879 * 121.72691 * 359.97438 * 21 20 19 23 23 C 1.47064 * 136.05710 * 186.49548 * 9 7 2 24 24 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 25 25 H 1.09005 * 113.46771 * 267.69760 * 10 9 7 26 26 H 1.09002 * 113.46911 * 38.13600 * 10 9 7 27 27 H 1.09002 * 114.27057 * 139.79527 * 11 10 9 28 28 H 0.96994 * 120.00205 * 68.58951 * 12 11 10 29 29 H 1.08999 * 109.47054 * 300.00082 * 15 13 12 30 30 H 1.09002 * 109.46665 * 60.00578 * 15 13 12 31 31 H 1.08999 * 109.47114 * 299.99708 * 16 15 13 32 32 H 1.08993 * 109.47093 * 60.00643 * 16 15 13 33 33 H 1.08000 * 120.79566 * 0.02712 * 18 17 16 34 34 H 1.08008 * 120.41635 * 180.22096 * 19 18 17 35 35 H 1.07996 * 119.61935 * 179.74562 * 20 19 18 36 36 H 1.08004 * 119.61813 * 179.97438 * 22 21 20 37 37 H 1.08996 * 113.46819 * 321.85844 * 23 9 7 38 38 H 1.09007 * 113.47055 * 92.24673 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 1.3948 5 1 3.5964 1.4120 -0.5920 6 1 1.5042 2.6200 -0.8027 7 6 2.0102 -1.2022 0.0005 8 1 3.0851 -1.2051 0.1052 9 7 1.3320 -2.3844 -0.1317 10 6 -0.0579 -2.7836 -0.3992 11 6 0.4926 -4.0843 -1.0069 12 7 0.8294 -3.9921 -2.4297 13 6 0.0975 -4.6642 -3.3404 14 8 -0.8401 -5.3449 -2.9820 15 6 0.4443 -4.5699 -4.8039 16 6 -0.5348 -5.4202 -5.6158 17 6 -0.1884 -5.3254 -7.0795 18 6 -0.7584 -4.3418 -7.8735 19 6 -0.4068 -4.2898 -9.2135 20 6 0.4856 -5.2201 -9.7124 21 7 1.0042 -6.1449 -8.9286 22 6 0.6972 -6.2207 -7.6483 23 6 1.6717 -3.8136 -0.0623 24 1 -0.4850 0.8401 -0.0004 25 1 -0.6458 -2.9419 0.5050 26 1 -0.5617 -2.1435 -1.1235 27 1 -0.0846 -4.9747 -0.7576 28 1 1.5790 -3.4475 -2.7164 29 1 0.3772 -3.5310 -5.1270 30 1 1.4595 -4.9345 -4.9609 31 1 -0.4681 -6.4591 -5.2929 32 1 -1.5497 -5.0552 -5.4588 33 1 -1.4565 -3.6307 -7.4572 34 1 -0.8285 -3.5348 -9.8606 35 1 0.7615 -5.1889 -10.7560 36 1 1.1420 -6.9925 -7.0375 37 1 2.6415 -4.0509 -0.4996 38 1 1.5408 -4.2432 0.9310 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481569522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:10 Heat of formation + Delta-G solvation = 26.630245 kcal Electronic energy + Delta-G solvation = -20141.523366 eV Core-core repulsion = 16984.664028 eV Total energy + Delta-G solvation = -3156.859338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26044 -40.84251 -39.31784 -35.48093 -34.91954 -33.74466 -32.93368 -31.00959 -29.48031 -26.41176 -26.32712 -24.82678 -24.44956 -22.68427 -21.32551 -20.95452 -18.75280 -18.24192 -17.83075 -17.40525 -16.94891 -16.85111 -16.24179 -15.90656 -15.60438 -15.32072 -14.74111 -14.64580 -14.48849 -14.15437 -13.94741 -13.83678 -13.35055 -13.21049 -13.09577 -12.78948 -12.48346 -12.41608 -12.10347 -11.97600 -11.78829 -11.28302 -11.01146 -10.84338 -10.66303 -10.35260 -9.87682 -9.84545 -8.96397 -7.92856 -5.26020 0.19509 0.37575 1.46757 1.47696 1.57296 1.69665 2.27823 2.46805 2.90778 3.29889 3.45058 3.55328 3.74652 3.81621 3.94087 4.03825 4.10312 4.13439 4.29517 4.36897 4.50743 4.56478 4.65520 4.70761 4.80684 4.89382 4.92244 4.98823 5.12690 5.19270 5.21035 5.25674 5.43244 5.46358 5.73525 5.83092 5.88298 6.68761 6.87994 7.06384 7.33094 7.58658 8.58614 9.25636 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.003485 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.791331 B = 8031.619752 C = 8814.051333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.067 4.067 3 Si 0.979 3.021 4 H -0.291 1.291 5 H -0.262 1.262 6 H -0.297 1.297 7 C -0.227 4.227 8 H 0.091 0.909 9 N -0.633 5.633 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.691 5.691 13 C 0.512 3.488 14 O -0.585 6.585 15 C -0.124 4.124 16 C -0.052 4.052 17 C -0.133 4.133 18 C -0.082 4.082 19 C -0.168 4.168 20 C 0.079 3.921 21 N -0.512 5.512 22 C 0.089 3.911 23 C 0.114 3.886 24 H 0.247 0.753 25 H 0.022 0.978 26 H 0.027 0.973 27 H 0.106 0.894 28 H 0.410 0.590 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.146 0.854 34 H 0.160 0.840 35 H 0.176 0.824 36 H 0.166 0.834 37 H 0.066 0.934 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 -10.115 -17.046 19.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.260 4.260 3 Si 0.807 3.193 4 H -0.218 1.218 5 H -0.186 1.186 6 H -0.223 1.223 7 C -0.355 4.355 8 H 0.109 0.891 9 N -0.360 5.360 10 C 0.017 3.983 11 C 0.002 3.998 12 N -0.341 5.341 13 C 0.301 3.699 14 O -0.466 6.466 15 C -0.163 4.163 16 C -0.091 4.091 17 C -0.135 4.135 18 C -0.108 4.108 19 C -0.188 4.188 20 C -0.077 4.077 21 N -0.221 5.221 22 C -0.067 4.067 23 C -0.012 4.012 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.124 0.876 28 H 0.246 0.754 29 H 0.122 0.878 30 H 0.135 0.865 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.164 0.836 34 H 0.178 0.822 35 H 0.193 0.807 36 H 0.183 0.817 37 H 0.084 0.916 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.663 -10.861 -17.134 20.355 hybrid contribution -0.302 2.084 0.884 2.284 sum 1.361 -8.777 -16.251 18.520 Atomic orbital electron populations 1.70054 1.06715 1.25632 1.57931 1.25681 0.96397 1.01082 1.02837 0.85052 0.78011 0.79059 0.77131 1.21781 1.18631 1.22345 1.19379 0.91082 0.82671 1.42406 0.89143 1.46118 1.06109 1.00680 1.83047 1.22458 0.88208 0.91852 0.95745 1.22277 0.98174 0.97766 0.81553 1.45511 1.33863 1.49056 1.05643 1.21241 0.81387 0.77973 0.89323 1.90657 1.30637 1.42807 1.82497 1.21628 1.02611 1.03540 0.88541 1.20152 0.99050 1.01318 0.88550 1.20899 0.98633 0.97132 0.96878 1.21865 0.97948 0.96904 0.94094 1.22461 0.99114 1.00905 0.96284 1.23224 0.93362 0.90386 1.00740 1.67708 1.24876 1.23446 1.06066 1.22939 0.94620 0.97921 0.91243 1.22884 0.97116 0.84231 0.96945 0.94401 0.96034 0.95409 0.87605 0.75419 0.87833 0.86489 0.89937 0.90876 0.83579 0.82211 0.80697 0.81698 0.91563 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.52 11.81 21.65 0.26 -57.27 16 2 C -0.07 -3.72 5.50 84.86 0.47 -3.26 16 3 Si 0.98 44.54 29.56 68.60 2.03 46.56 16 4 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 7 C -0.23 -12.22 10.73 84.04 0.90 -11.32 16 8 H 0.09 4.57 7.84 -2.91 -0.02 4.55 16 9 N -0.63 -31.03 3.76 -738.02 -2.78 -33.81 16 10 C 0.14 6.90 7.06 83.27 0.59 7.49 16 11 C 0.11 4.03 4.61 45.55 0.21 4.24 16 12 N -0.69 -22.02 5.40 -441.51 -2.38 -24.40 16 13 C 0.51 15.22 7.83 87.66 0.69 15.90 16 14 O -0.59 -21.43 15.57 -3.04 -0.05 -21.48 16 15 C -0.12 -2.51 5.68 29.85 0.17 -2.34 16 16 C -0.05 -1.03 4.66 29.85 0.14 -0.89 16 17 C -0.13 -2.43 5.15 -19.77 -0.10 -2.53 16 18 C -0.08 -1.35 9.86 22.47 0.22 -1.13 16 19 C -0.17 -2.39 10.11 22.36 0.23 -2.16 16 20 C 0.08 1.29 11.18 84.69 0.95 2.24 16 21 N -0.51 -10.69 10.36 -195.84 -2.03 -12.72 16 22 C 0.09 1.70 10.86 84.67 0.92 2.62 16 23 C 0.11 4.26 8.44 83.18 0.70 4.97 16 24 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 25 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 26 H 0.03 1.50 7.57 -2.39 -0.02 1.48 16 27 H 0.11 3.76 7.45 -2.39 -0.02 3.74 16 28 H 0.41 12.22 8.76 -92.71 -0.81 11.41 16 29 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.65 8.05 -2.39 -0.02 1.63 16 32 H 0.07 1.59 8.05 -2.39 -0.02 1.58 16 33 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -71.52 328.45 1.37 -70.15 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.25 Total: 19.13 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.08 Total: 13.83 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -6.93 Total: -128.20 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.05 Total: -21.48 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -71.52 1.37 -70.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481569522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.779 kcal (2) G-P(sol) polarization free energy of solvation -71.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds