Wall clock time and date at job start Mon Mar 30 2020 01:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47241 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47171 * 120.00318 * 3 2 1 6 6 H 1.48501 * 109.47057 * 240.00017 * 3 2 1 7 7 C 1.38807 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00300 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00055 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47050 * 172.91966 * 10 9 7 12 12 H 1.09007 * 109.87700 * 44.69108 * 11 10 9 13 13 C 1.54324 * 109.88287 * 165.70082 * 11 10 9 14 14 C 1.55155 * 102.94277 * 141.60933 * 13 11 10 15 15 C 1.54906 * 101.58471 * 324.49938 * 14 13 11 16 16 N 1.47017 * 109.88534 * 283.51290 * 11 10 9 17 17 C 1.34777 * 125.65219 * 61.62018 * 16 11 10 18 18 O 1.21552 * 119.99553 * 7.92497 * 17 16 11 19 19 C 1.47836 * 120.00127 * 187.92951 * 17 16 11 20 20 C 1.40024 * 120.55658 * 191.69686 * 19 17 16 21 21 C 1.38360 * 118.29081 * 179.97438 * 20 19 17 22 22 C 1.38351 * 119.29872 * 0.02562 * 21 20 19 23 23 N 1.31924 * 121.08057 * 0.02562 * 22 21 20 24 24 C 1.31693 * 121.88251 * 359.65713 * 23 22 21 25 25 H 0.96999 * 119.99962 * 179.97438 * 1 2 3 26 26 H 0.96999 * 120.00282 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47250 * 292.91898 * 10 9 7 28 28 H 1.09000 * 109.47379 * 52.92000 * 10 9 7 29 29 H 1.08998 * 110.72488 * 259.97546 * 13 11 10 30 30 H 1.09003 * 110.71807 * 23.24965 * 13 11 10 31 31 H 1.08998 * 111.00015 * 82.57795 * 14 13 11 32 32 H 1.09000 * 111.00292 * 206.42520 * 14 13 11 33 33 H 1.08995 * 110.36853 * 155.84037 * 15 14 13 34 34 H 1.08997 * 110.36827 * 278.06099 * 15 14 13 35 35 H 1.08000 * 120.85475 * 0.02826 * 20 19 17 36 36 H 1.07995 * 120.35264 * 179.97438 * 21 20 19 37 37 H 1.08003 * 119.46089 * 179.97438 * 22 21 20 38 38 H 1.07996 * 119.72261 * 180.31348 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0736 -4.8141 0.1773 12 1 0.2057 -4.6644 -0.4652 13 6 1.7633 -6.1489 -0.1752 14 6 1.1888 -7.1271 0.8833 15 6 1.0657 -6.2066 2.1231 16 7 0.6504 -4.8992 1.5826 17 6 -0.0078 -3.9408 2.2643 18 8 -0.4270 -2.9598 1.6817 19 6 -0.2196 -4.0825 3.7205 20 6 -1.1011 -3.2310 4.3978 21 6 -1.2643 -3.4056 5.7606 22 6 -0.5577 -4.4058 6.4045 23 7 0.2671 -5.1927 5.7404 24 6 0.4515 -5.0700 4.4423 25 1 -0.4850 -0.8400 -0.0004 26 1 0.3557 -2.3881 -0.0005 27 1 2.5865 -3.7713 -0.9471 28 1 2.7765 -3.6616 0.8193 29 1 1.4938 -6.4683 -1.1819 30 1 2.8452 -6.0625 -0.0735 31 1 0.2127 -7.5039 0.5779 32 1 1.8807 -7.9477 1.0731 33 1 0.3099 -6.5914 2.8077 34 1 2.0272 -6.1215 2.6294 35 1 -1.6405 -2.4585 3.8698 36 1 -1.9355 -2.7674 6.3161 37 1 -0.6828 -4.5441 7.4683 38 1 1.1315 -5.7365 3.9327 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482052218.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:57 Heat of formation + Delta-G solvation = 17.678020 kcal Electronic energy + Delta-G solvation = -21701.733322 eV Core-core repulsion = 18544.485786 eV Total energy + Delta-G solvation = -3157.247536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.91514 -40.44438 -38.51967 -36.63718 -33.92489 -33.50468 -32.96380 -31.73880 -30.17103 -26.78948 -25.89643 -24.82608 -24.39580 -23.19056 -22.11824 -20.51189 -19.36977 -18.54945 -17.94008 -17.74231 -17.29238 -16.82663 -15.85077 -15.61544 -15.50536 -15.21041 -15.08931 -14.84939 -14.52053 -14.31689 -14.08149 -13.88819 -13.60796 -13.25910 -12.88474 -12.58589 -12.57308 -12.21061 -11.94091 -11.88963 -11.63876 -11.23721 -11.11142 -11.01015 -10.92482 -10.48498 -10.24039 -9.68932 -8.97487 -8.34247 -5.23381 -0.38773 0.12140 1.49942 1.62884 1.79070 1.80257 1.92298 2.71459 2.78341 3.22588 3.44588 3.44894 3.57038 3.68586 3.78332 3.86331 3.93173 3.99187 4.14592 4.21970 4.26654 4.38352 4.46814 4.59741 4.68064 4.71743 4.78913 4.93568 4.96808 5.03411 5.07007 5.11508 5.32889 5.43832 5.53629 5.56543 6.46483 6.58333 6.76539 7.06976 7.33144 8.18274 8.28434 9.18802 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014540 B = 0.006872 C = 0.005042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.279368 B = 4073.748766 C = 5552.561192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.108 4.108 3 Si 1.130 2.870 4 H -0.291 1.291 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.339 4.339 8 H 0.056 0.944 9 N -0.751 5.751 10 C 0.147 3.853 11 C 0.130 3.870 12 H 0.048 0.952 13 C -0.114 4.114 14 C -0.116 4.116 15 C 0.076 3.924 16 N -0.611 5.611 17 C 0.554 3.446 18 O -0.546 6.546 19 C -0.196 4.196 20 C -0.042 4.042 21 C -0.169 4.169 22 C 0.120 3.880 23 N -0.499 5.499 24 C 0.110 3.890 25 H 0.246 0.754 26 H 0.373 0.627 27 H 0.027 0.973 28 H 0.012 0.988 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.123 0.877 36 H 0.173 0.827 37 H 0.202 0.798 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 -18.976 10.712 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.300 4.300 3 Si 0.954 3.046 4 H -0.217 1.217 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.471 4.471 8 H 0.074 0.926 9 N -0.401 5.401 10 C 0.020 3.980 11 C 0.026 3.974 12 H 0.066 0.934 13 C -0.152 4.152 14 C -0.154 4.154 15 C -0.044 4.044 16 N -0.345 5.345 17 C 0.343 3.657 18 O -0.424 6.424 19 C -0.202 4.202 20 C -0.069 4.069 21 C -0.188 4.188 22 C -0.036 4.036 23 N -0.208 5.208 24 C -0.046 4.046 25 H 0.057 0.943 26 H 0.211 0.789 27 H 0.045 0.955 28 H 0.029 0.971 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.141 0.859 36 H 0.191 0.809 37 H 0.219 0.781 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.449 -17.423 10.887 20.596 hybrid contribution -0.817 -0.297 -0.786 1.172 sum 0.632 -17.720 10.101 20.406 Atomic orbital electron populations 1.70844 1.07158 1.28293 1.55565 1.27262 0.97245 1.04630 1.00841 0.82643 0.73329 0.71617 0.77019 1.21652 1.20933 1.19932 1.20355 0.91742 0.87850 1.47153 0.92564 1.42967 1.05944 1.01260 1.89916 1.21172 0.93897 0.85613 0.97339 1.21900 0.96251 0.97028 0.82200 0.93365 1.22653 1.00931 0.90352 1.01259 1.22834 1.03289 0.97116 0.92123 1.23090 1.01028 0.81676 0.98651 1.48415 1.56440 1.17241 1.12399 1.18320 0.78260 0.81996 0.87125 1.90807 1.50120 1.31234 1.70190 1.20980 1.03695 1.01754 0.93739 1.21882 0.93739 0.95456 0.95817 1.22481 1.02321 1.00718 0.93305 1.23698 0.88899 0.88917 1.02097 1.67880 1.17523 1.27014 1.08335 1.24310 0.95782 0.94287 0.90265 0.94314 0.78928 0.95535 0.97050 0.88245 0.89103 0.89899 0.85778 0.88526 0.89125 0.85943 0.80909 0.78113 0.78609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -68.20 13.70 21.65 0.30 -67.90 16 2 C -0.11 -7.03 5.50 84.86 0.47 -6.56 16 3 Si 1.13 57.29 29.92 68.60 2.05 59.34 16 4 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 5 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.34 -21.64 9.99 84.03 0.84 -20.80 16 8 H 0.06 3.48 7.83 -2.91 -0.02 3.45 16 9 N -0.75 -43.99 4.46 -343.46 -1.53 -45.53 16 10 C 0.15 6.63 5.61 86.38 0.48 7.11 16 11 C 0.13 4.49 3.02 45.34 0.14 4.62 16 12 H 0.05 1.91 8.10 -2.38 -0.02 1.89 16 13 C -0.11 -2.34 6.44 31.78 0.20 -2.14 16 14 C -0.12 -1.65 7.08 31.98 0.23 -1.43 16 15 C 0.08 1.51 4.90 86.85 0.43 1.93 16 16 N -0.61 -20.20 3.07 -791.43 -2.43 -22.63 16 17 C 0.55 22.95 7.47 86.78 0.65 23.59 16 18 O -0.55 -29.39 13.17 -3.88 -0.05 -29.45 16 19 C -0.20 -6.64 5.84 -20.00 -0.12 -6.75 16 20 C -0.04 -1.35 9.71 22.73 0.22 -1.13 16 21 C -0.17 -3.75 10.10 22.33 0.23 -3.52 16 22 C 0.12 2.37 11.17 84.71 0.95 3.31 16 23 N -0.50 -12.03 10.35 -194.76 -2.01 -14.05 16 24 C 0.11 2.90 9.45 85.02 0.80 3.71 16 25 H 0.25 17.85 6.73 -92.71 -0.62 17.23 16 26 H 0.37 23.44 3.93 -92.71 -0.36 23.07 16 27 H 0.03 1.16 8.08 -2.39 -0.02 1.14 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 1.72 7.85 -2.39 -0.02 1.70 16 31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 1.64 6.32 -2.39 -0.02 1.62 16 34 H 0.09 1.52 7.12 -2.39 -0.02 1.51 16 35 H 0.12 4.47 7.78 -2.91 -0.02 4.44 16 36 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 37 H 0.20 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.20 4.14 3.57 -2.91 -0.01 4.13 16 Total: -1.00 -90.65 308.25 2.70 -87.95 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.86 Total: 30.31 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.51 Total: 1.95 kcal Atomic # 7 Polarization: -144.43 SS G_CDS: -5.68 Total: -150.10 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.05 Total: -29.45 kcal Atomic # 14 Polarization: 57.29 SS G_CDS: 2.05 Total: 59.34 kcal Total: -90.65 2.70 -87.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482052218.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.630 kcal (2) G-P(sol) polarization free energy of solvation -90.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds