Wall clock time and date at job start Mon Mar 30 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 119.99684 * 2 1 4 4 H 1.48493 * 109.47029 * 270.00094 * 3 2 1 5 5 H 1.48499 * 109.47003 * 29.99857 * 3 2 1 6 6 H 1.48496 * 109.46747 * 150.00341 * 3 2 1 7 7 C 1.38801 * 120.00350 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00019 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00458 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47071 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47589 * 295.00690 * 11 10 9 13 13 N 1.46500 * 109.47003 * 55.00255 * 11 10 9 14 14 C 1.34773 * 120.00509 * 204.99732 * 13 11 10 15 15 O 1.21560 * 119.99586 * 0.02562 * 14 13 11 16 16 C 1.47837 * 120.00601 * 179.97438 * 14 13 11 17 17 C 1.40020 * 120.56394 * 179.72394 * 16 14 13 18 18 C 1.38353 * 118.29170 * 179.73423 * 17 16 14 19 19 C 1.38357 * 119.30217 * 0.56680 * 18 17 16 20 20 N 1.31923 * 121.07796 * 359.69420 * 19 18 17 21 21 C 1.31699 * 121.88060 * 0.02562 * 20 19 18 22 22 C 1.52996 * 109.47215 * 175.00179 * 11 10 9 23 23 C 1.53002 * 117.49888 * 111.25646 * 22 11 10 24 24 C 1.53000 * 117.50107 * 179.91408 * 22 11 10 25 25 H 0.97001 * 120.00478 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99631 * 0.02562 * 9 7 2 27 27 H 1.08997 * 109.46694 * 60.00472 * 10 9 7 28 28 H 1.08996 * 109.47259 * 300.00462 * 10 9 7 29 29 H 0.97006 * 119.99923 * 24.99965 * 13 11 10 30 30 H 1.08005 * 120.85563 * 0.02562 * 17 16 14 31 31 H 1.08005 * 120.35235 * 180.25485 * 18 17 16 32 32 H 1.07993 * 119.45969 * 179.71744 * 19 18 17 33 33 H 1.08000 * 119.71547 * 180.02562 * 21 20 19 34 34 H 1.09002 * 115.54951 * 325.58620 * 22 11 10 35 35 H 1.09000 * 117.49996 * 215.00804 * 23 22 11 36 36 H 1.08999 * 117.49664 * 0.02562 * 23 22 11 37 37 H 1.09008 * 117.49673 * 359.97438 * 24 22 11 38 38 H 1.08999 * 117.49942 * 144.97366 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1911 -0.0011 12 1 5.8943 -1.6976 -0.9323 13 7 5.9517 -1.3230 1.1304 14 6 7.0496 -0.5430 1.0792 15 8 7.7614 -0.5594 0.0940 16 6 7.3876 0.3334 2.2208 17 6 8.5285 1.1443 2.1825 18 6 8.7971 1.9503 3.2744 19 6 7.9447 1.9209 4.3638 20 7 6.8796 1.1426 4.3742 21 6 6.5786 0.3619 3.3572 22 6 6.3804 -3.5107 0.1246 23 6 7.1796 -3.9829 -1.0917 24 6 7.9089 -3.4433 0.1412 25 1 -0.4851 0.8400 -0.0004 26 1 3.8646 -0.3620 -0.0007 27 1 3.8486 -3.0424 -0.8909 28 1 3.8492 -3.0422 0.8891 29 1 5.3835 -1.3097 1.9165 30 1 9.1795 1.1441 1.3207 31 1 9.6659 2.5920 3.2785 32 1 8.1544 2.5457 5.2193 33 1 5.6975 -0.2611 3.4028 34 1 5.9036 -4.2732 0.7405 35 1 7.2284 -5.0561 -1.2761 36 1 7.1613 -3.3532 -1.9812 37 1 8.3701 -2.4587 0.0621 38 1 8.4375 -4.1611 0.7683 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483542616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:16 Heat of formation + Delta-G solvation = 43.509373 kcal Electronic energy + Delta-G solvation = -21086.967234 eV Core-core repulsion = 17930.839830 eV Total energy + Delta-G solvation = -3156.127404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.74622 -39.39919 -37.25918 -35.25040 -33.70427 -32.67752 -31.88097 -31.06185 -28.48709 -24.84719 -23.92673 -23.55168 -22.23086 -21.38571 -20.98431 -20.23054 -18.32718 -17.55041 -17.05082 -16.52201 -15.84536 -15.45434 -14.96396 -14.94859 -14.52261 -14.12381 -13.82488 -13.49070 -13.31268 -13.21337 -12.82945 -12.44826 -12.27169 -11.97467 -11.36600 -11.31292 -11.10274 -10.90061 -10.35250 -10.22952 -10.13719 -10.10708 -9.95635 -9.64648 -9.54078 -9.41002 -8.98617 -8.86152 -7.31676 -5.82132 -3.18887 0.48471 1.01021 2.81947 3.10130 3.33256 3.37784 3.42790 3.71186 3.99340 4.14048 4.54294 4.56266 4.64738 4.69370 4.72063 4.83432 5.05310 5.16663 5.17765 5.27576 5.39350 5.47068 5.54723 5.69950 5.77106 5.80927 5.85262 5.88919 6.02396 6.23171 6.30841 6.34210 6.39898 6.51690 6.72793 7.56682 7.66353 7.92518 8.22335 8.36313 9.14410 9.86647 10.05378 11.35904 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.011943 B = 0.007201 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.889375 B = 3887.184113 C = 5679.435819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.009 3.991 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.755 5.755 10 C 0.152 3.848 11 C 0.164 3.836 12 H 0.091 0.909 13 N -0.704 5.704 14 C 0.564 3.436 15 O -0.538 6.538 16 C -0.184 4.184 17 C -0.019 4.019 18 C -0.183 4.183 19 C 0.118 3.882 20 N -0.486 5.486 21 C 0.138 3.862 22 C -0.164 4.164 23 C -0.169 4.169 24 C -0.186 4.186 25 H 0.260 0.740 26 H 0.362 0.638 27 H 0.047 0.953 28 H 0.035 0.965 29 H 0.404 0.596 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.161 0.839 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.411 -1.343 6.168 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.187 4.187 3 Si 0.712 3.288 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.402 5.402 10 C 0.025 3.975 11 C 0.060 3.940 12 H 0.109 0.891 13 N -0.354 5.354 14 C 0.350 3.650 15 O -0.418 6.418 16 C -0.189 4.189 17 C -0.045 4.045 18 C -0.203 4.203 19 C -0.039 4.039 20 N -0.194 5.194 21 C -0.020 4.020 22 C -0.183 4.183 23 C -0.207 4.207 24 C -0.222 4.222 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.240 0.760 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.179 0.821 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.134 0.866 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 19.086 -1.449 6.190 20.117 hybrid contribution 0.722 1.236 -0.341 1.471 sum 19.808 -0.213 5.849 20.654 Atomic orbital electron populations 1.69689 1.05055 1.25893 1.57194 1.24644 0.95181 0.97087 1.01819 0.86603 0.79107 0.85189 0.77890 1.21072 1.21624 1.20510 1.19028 0.80398 0.94784 1.43483 0.89029 1.42703 1.04143 1.02022 1.91309 1.20912 0.86704 0.89895 1.00019 1.20932 0.95421 0.88073 0.89552 0.89146 1.45969 1.26112 1.42251 1.21070 1.17984 0.81104 0.79519 0.86343 1.90689 1.50658 1.67362 1.33046 1.21082 0.98941 1.01893 0.96962 1.21736 0.94114 0.90678 0.97994 1.22161 1.02079 1.01245 0.94781 1.23025 0.89211 0.94270 0.97404 1.67731 1.17634 1.05993 1.28083 1.23107 0.97222 0.94052 0.87665 1.22624 0.93708 0.98999 1.03004 1.22906 1.04227 1.00840 0.92681 1.23263 0.93979 1.04045 1.00958 0.92967 0.80487 0.93566 0.94754 0.76003 0.83537 0.84078 0.82268 0.82149 0.87545 0.89022 0.88699 0.86645 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 2 C 0.01 0.26 5.50 -17.44 -0.10 0.16 16 3 Si 0.88 22.25 27.74 -169.99 -4.71 17.53 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 7 C -0.25 -6.82 10.47 -15.06 -0.16 -6.98 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 9 N -0.76 -17.25 5.24 -59.91 -0.31 -17.57 16 10 C 0.15 2.76 5.80 -4.04 -0.02 2.73 16 11 C 0.16 2.55 2.43 -67.93 -0.17 2.38 16 12 H 0.09 1.56 7.33 -51.93 -0.38 1.18 16 13 N -0.70 -10.42 4.45 -54.76 -0.24 -10.66 16 14 C 0.56 8.57 7.11 -12.33 -0.09 8.48 16 15 O -0.54 -9.23 13.45 5.31 0.07 -9.16 16 16 C -0.18 -2.46 5.89 -104.82 -0.62 -3.07 16 17 C -0.02 -0.21 9.72 -38.87 -0.38 -0.59 16 18 C -0.18 -1.67 10.10 -39.50 -0.40 -2.07 16 19 C 0.12 1.18 11.17 -17.47 -0.20 0.98 16 20 N -0.49 -6.28 10.35 -12.91 -0.13 -6.41 16 21 C 0.14 1.80 10.71 -17.13 -0.18 1.62 16 22 C -0.16 -2.15 5.36 -90.62 -0.49 -2.63 16 23 C -0.17 -2.06 10.18 -26.69 -0.27 -2.33 16 24 C -0.19 -2.37 9.73 -26.70 -0.26 -2.63 16 25 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 26 H 0.36 8.31 5.20 -40.82 -0.21 8.10 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.40 5.59 6.67 -40.82 -0.27 5.31 16 30 H 0.15 1.56 7.74 -52.48 -0.41 1.15 16 31 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.16 1.90 6.42 -52.49 -0.34 1.57 16 34 H 0.11 1.29 8.11 -51.93 -0.42 0.87 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 37 H 0.12 1.71 5.02 -51.92 -0.26 1.45 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 319.69 15.07 4.82 4.82 Total: -1.00 -32.95 319.69 -7.90 -40.84 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -4.84 Total: 12.73 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -3.32 Total: -3.96 kcal Atomic # 7 Polarization: -62.89 SS G_CDS: 0.08 Total: -62.80 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.95 -7.90 -40.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483542616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.353 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds