Wall clock time and date at job start Mon Mar 30 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86809 * 119.99684 * 2 1 4 4 H 1.48493 * 109.47029 * 270.00094 * 3 2 1 5 5 H 1.48499 * 109.47003 * 29.99857 * 3 2 1 6 6 H 1.48496 * 109.46747 * 150.00341 * 3 2 1 7 7 C 1.38801 * 120.00350 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00019 * 359.97438 * 7 2 1 9 9 N 1.36942 * 120.00458 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47071 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47589 * 295.00690 * 11 10 9 13 13 N 1.46500 * 109.47003 * 55.00255 * 11 10 9 14 14 C 1.34773 * 120.00509 * 204.99732 * 13 11 10 15 15 O 1.21560 * 119.99586 * 0.02562 * 14 13 11 16 16 C 1.47837 * 120.00601 * 179.97438 * 14 13 11 17 17 C 1.40020 * 120.56394 * 179.72394 * 16 14 13 18 18 C 1.38353 * 118.29170 * 179.73423 * 17 16 14 19 19 C 1.38357 * 119.30217 * 0.56680 * 18 17 16 20 20 N 1.31923 * 121.07796 * 359.69420 * 19 18 17 21 21 C 1.31699 * 121.88060 * 0.02562 * 20 19 18 22 22 C 1.52996 * 109.47215 * 175.00179 * 11 10 9 23 23 C 1.53002 * 117.49888 * 111.25646 * 22 11 10 24 24 C 1.53000 * 117.50107 * 179.91408 * 22 11 10 25 25 H 0.97001 * 120.00478 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99631 * 0.02562 * 9 7 2 27 27 H 1.08997 * 109.46694 * 60.00472 * 10 9 7 28 28 H 1.08996 * 109.47259 * 300.00462 * 10 9 7 29 29 H 0.97006 * 119.99923 * 24.99965 * 13 11 10 30 30 H 1.08005 * 120.85563 * 0.02562 * 17 16 14 31 31 H 1.08005 * 120.35235 * 180.25485 * 18 17 16 32 32 H 1.07993 * 119.45969 * 179.71744 * 19 18 17 33 33 H 1.08000 * 119.71547 * 180.02562 * 21 20 19 34 34 H 1.09002 * 115.54951 * 325.58620 * 22 11 10 35 35 H 1.09000 * 117.49996 * 215.00804 * 23 22 11 36 36 H 1.08999 * 117.49664 * 0.02562 * 23 22 11 37 37 H 1.09008 * 117.49673 * 359.97438 * 24 22 11 38 38 H 1.08999 * 117.49942 * 144.97366 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 6 5.6164 -2.1911 -0.0011 12 1 5.8943 -1.6976 -0.9323 13 7 5.9517 -1.3230 1.1304 14 6 7.0496 -0.5430 1.0792 15 8 7.7614 -0.5594 0.0940 16 6 7.3876 0.3334 2.2208 17 6 8.5285 1.1443 2.1825 18 6 8.7971 1.9503 3.2744 19 6 7.9447 1.9209 4.3638 20 7 6.8796 1.1426 4.3742 21 6 6.5786 0.3619 3.3572 22 6 6.3804 -3.5107 0.1246 23 6 7.1796 -3.9829 -1.0917 24 6 7.9089 -3.4433 0.1412 25 1 -0.4851 0.8400 -0.0004 26 1 3.8646 -0.3620 -0.0007 27 1 3.8486 -3.0424 -0.8909 28 1 3.8492 -3.0422 0.8891 29 1 5.3835 -1.3097 1.9165 30 1 9.1795 1.1441 1.3207 31 1 9.6659 2.5920 3.2785 32 1 8.1544 2.5457 5.2193 33 1 5.6975 -0.2611 3.4028 34 1 5.9036 -4.2732 0.7405 35 1 7.2284 -5.0561 -1.2761 36 1 7.1613 -3.3532 -1.9812 37 1 8.3701 -2.4587 0.0621 38 1 8.4375 -4.1611 0.7683 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483542616.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:16 Heat of formation + Delta-G solvation = 20.937192 kcal Electronic energy + Delta-G solvation = -21087.946037 eV Core-core repulsion = 17930.839830 eV Total energy + Delta-G solvation = -3157.106207 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.75448 -40.43619 -38.43231 -36.78292 -35.18145 -33.61250 -33.45350 -32.37369 -29.98496 -26.14149 -25.29797 -24.50887 -23.25840 -23.01392 -22.05629 -21.39940 -19.95511 -18.95984 -18.04540 -17.48445 -16.94080 -16.68398 -16.51456 -16.11848 -15.91884 -15.36030 -15.02436 -14.80817 -14.64812 -14.44843 -14.15219 -13.87180 -13.56932 -13.23701 -12.95200 -12.75400 -12.60793 -12.30958 -12.11022 -11.86057 -11.45018 -11.19562 -11.06707 -11.00551 -10.99030 -10.49186 -10.29791 -10.04084 -9.34838 -8.05696 -5.38944 -0.41298 0.17078 1.31939 1.34482 1.40681 1.76131 1.97932 2.42743 2.80672 2.97236 3.26523 3.28400 3.40580 3.68920 3.78384 3.82049 3.90065 3.98580 4.03819 4.13092 4.23930 4.38915 4.43089 4.57853 4.63256 4.81987 4.86527 4.97668 5.03456 5.03864 5.09256 5.28064 5.31950 5.46671 5.56201 5.74041 6.17815 6.41510 6.81199 7.03613 7.07529 7.78727 7.96645 9.15557 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.011943 B = 0.007201 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.889375 B = 3887.184113 C = 5679.435819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.055 4.055 3 Si 0.944 3.056 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.258 1.258 7 C -0.229 4.229 8 H 0.066 0.934 9 N -0.757 5.757 10 C 0.152 3.848 11 C 0.175 3.825 12 H 0.071 0.929 13 N -0.704 5.704 14 C 0.563 3.437 15 O -0.563 6.563 16 C -0.202 4.202 17 C -0.028 4.028 18 C -0.167 4.167 19 C 0.117 3.883 20 N -0.511 5.511 21 C 0.127 3.873 22 C -0.167 4.167 23 C -0.162 4.162 24 C -0.182 4.182 25 H 0.258 0.742 26 H 0.363 0.637 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.408 0.592 30 H 0.151 0.849 31 H 0.180 0.820 32 H 0.195 0.805 33 H 0.162 0.838 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.956 -0.828 7.173 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.247 4.247 3 Si 0.773 3.227 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.183 1.183 7 C -0.360 4.360 8 H 0.084 0.916 9 N -0.403 5.403 10 C 0.026 3.974 11 C 0.071 3.929 12 H 0.089 0.911 13 N -0.354 5.354 14 C 0.351 3.649 15 O -0.444 6.444 16 C -0.208 4.208 17 C -0.054 4.054 18 C -0.187 4.187 19 C -0.039 4.039 20 N -0.220 5.220 21 C -0.031 4.031 22 C -0.187 4.187 23 C -0.200 4.200 24 C -0.219 4.219 25 H 0.067 0.933 26 H 0.196 0.804 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.245 0.755 30 H 0.168 0.832 31 H 0.198 0.802 32 H 0.212 0.788 33 H 0.179 0.821 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 21.676 -0.965 7.206 22.862 hybrid contribution -0.009 1.021 -0.627 1.199 sum 21.667 0.056 6.578 22.644 Atomic orbital electron populations 1.69847 1.06842 1.26541 1.59686 1.25342 0.95914 1.00572 1.02871 0.85574 0.78593 0.80805 0.77739 1.21240 1.22054 1.18285 1.19031 0.82370 0.93623 1.40968 0.91641 1.42693 1.02618 1.03884 1.91085 1.21054 0.88070 0.87931 1.00375 1.20684 0.93677 0.89385 0.89162 0.91075 1.45954 1.26304 1.42272 1.20906 1.18280 0.80647 0.79368 0.86587 1.90673 1.51400 1.68186 1.34139 1.21001 1.00356 1.02861 0.96534 1.21965 0.93584 0.90795 0.99082 1.22550 1.02648 1.00260 0.93196 1.23690 0.88113 0.93437 0.98693 1.67762 1.19204 1.06864 1.28176 1.23140 0.97514 0.94609 0.87851 1.22554 0.93848 0.97996 1.04274 1.22997 1.03038 1.02001 0.91958 1.23203 0.93470 1.03559 1.01682 0.93311 0.80381 0.93511 0.93521 0.75498 0.83150 0.80215 0.78833 0.82086 0.86075 0.86756 0.89605 0.88642 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.15 13.97 21.65 0.30 -61.85 16 2 C -0.05 -3.21 5.50 84.86 0.47 -2.75 16 3 Si 0.94 46.18 27.74 68.60 1.90 48.08 16 4 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 5 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.26 -11.55 6.52 99.48 0.65 -10.90 16 7 C -0.23 -12.72 10.47 84.03 0.88 -11.84 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 N -0.76 -34.18 5.24 -343.46 -1.80 -35.98 16 10 C 0.15 5.38 5.80 86.38 0.50 5.88 16 11 C 0.18 5.30 2.43 44.99 0.11 5.41 16 12 H 0.07 2.45 7.33 -2.39 -0.02 2.43 16 13 N -0.70 -20.37 4.45 -445.43 -1.98 -22.35 16 14 C 0.56 16.82 7.11 86.78 0.62 17.44 16 15 O -0.56 -19.19 13.45 -3.91 -0.05 -19.24 16 16 C -0.20 -5.20 5.89 -19.99 -0.12 -5.32 16 17 C -0.03 -0.58 9.72 22.73 0.22 -0.36 16 18 C -0.17 -2.49 10.10 22.33 0.23 -2.26 16 19 C 0.12 1.97 11.17 84.71 0.95 2.92 16 20 N -0.51 -12.26 10.35 -194.75 -2.01 -14.27 16 21 C 0.13 3.18 10.71 85.02 0.91 4.09 16 22 C -0.17 -4.12 5.36 -10.79 -0.06 -4.18 16 23 C -0.16 -3.67 10.18 30.62 0.31 -3.36 16 24 C -0.18 -4.37 9.73 30.62 0.30 -4.08 16 25 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 26 H 0.36 16.29 5.20 -92.71 -0.48 15.81 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.41 11.02 6.67 -92.70 -0.62 10.40 16 30 H 0.15 2.96 7.74 -2.91 -0.02 2.94 16 31 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.16 3.77 6.42 -2.91 -0.02 3.75 16 34 H 0.12 2.66 8.11 -2.39 -0.02 2.64 16 35 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.09 2.10 8.05 -2.39 -0.02 2.08 16 37 H 0.10 2.76 5.02 -2.38 -0.01 2.75 16 38 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -71.64 319.69 1.60 -70.03 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.07 Total: 33.99 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.31 Total: 1.59 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -5.49 Total: -134.45 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.05 Total: -19.24 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.08 kcal Total: -71.64 1.60 -70.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483542616.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.971 kcal (2) G-P(sol) polarization free energy of solvation -71.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds