Wall clock time and date at job start Mon Mar 30 2020 01:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47196 * 64.99810 * 11 10 9 13 13 N 1.46503 * 109.47269 * 304.99931 * 11 10 9 14 14 C 1.34773 * 120.00358 * 154.99590 * 13 11 10 15 15 O 1.21560 * 119.99774 * 0.02562 * 14 13 11 16 16 C 1.47838 * 120.00110 * 180.02562 * 14 13 11 17 17 C 1.40028 * 120.55947 * 179.72657 * 16 14 13 18 18 C 1.38349 * 118.28886 * 179.73451 * 17 16 14 19 19 C 1.38354 * 119.30272 * 0.54147 * 18 17 16 20 20 N 1.31922 * 121.08079 * 359.71563 * 19 18 17 21 21 C 1.31698 * 121.87734 * 0.02562 * 20 19 18 22 22 C 1.52997 * 109.47504 * 184.99959 * 11 10 9 23 23 C 1.53002 * 117.50022 * 248.74910 * 22 11 10 24 24 C 1.52997 * 117.50076 * 180.08715 * 22 11 10 25 25 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 29 29 H 0.97007 * 119.99919 * 335.00159 * 13 11 10 30 30 H 1.08010 * 120.85323 * 359.97141 * 17 16 14 31 31 H 1.08006 * 120.35068 * 180.24081 * 18 17 16 32 32 H 1.08004 * 119.45656 * 179.74233 * 19 18 17 33 33 H 1.07997 * 119.71270 * 179.97438 * 21 20 19 34 34 H 1.09003 * 115.54905 * 34.41348 * 22 11 10 35 35 H 1.09000 * 117.49650 * 359.97438 * 23 22 11 36 36 H 1.09001 * 117.49817 * 145.01411 * 23 22 11 37 37 H 1.08996 * 117.49862 * 214.97497 * 24 22 11 38 38 H 1.08996 * 117.50355 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4981 -4.8134 -0.9338 13 7 0.1441 -4.6764 1.1289 14 6 -1.0803 -5.2372 1.0770 15 8 -1.4212 -5.8623 0.0917 16 6 -2.0089 -5.0921 2.2182 17 6 -3.2858 -5.6650 2.1744 18 6 -4.1142 -5.5049 3.2708 19 6 -3.6633 -4.7811 4.3603 20 7 -2.4568 -4.2477 4.3714 21 6 -1.6299 -4.3768 3.3545 22 6 1.8248 -6.1411 0.1235 23 6 1.8349 -7.0690 -1.0930 24 6 1.0023 -7.4311 0.1394 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0016 27 1 2.6855 -3.7140 -0.8911 28 1 2.6842 -3.7148 0.8888 29 1 0.4162 -4.1777 1.9152 30 1 -3.6140 -6.2210 1.3085 31 1 -5.1044 -5.9362 3.2742 32 1 -4.3096 -4.6509 5.2158 33 1 -0.6500 -3.9252 3.4008 34 1 2.7234 -6.1095 0.7397 35 1 1.2991 -6.7382 -1.9828 36 1 2.7399 -7.6481 -1.2769 37 1 1.3599 -8.2483 0.7658 38 1 -0.0809 -7.3384 0.0608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483542617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:19 Heat of formation + Delta-G solvation = 39.478165 kcal Electronic energy + Delta-G solvation = -20952.468768 eV Core-core repulsion = 17796.166557 eV Total energy + Delta-G solvation = -3156.302210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.58663 -39.24315 -37.12042 -35.05838 -33.56250 -32.53094 -31.75581 -30.76876 -28.04230 -24.68148 -23.92392 -23.46758 -22.16328 -21.53147 -20.83475 -20.08341 -18.04876 -17.15282 -16.87478 -16.39352 -15.68957 -15.27450 -14.97561 -14.81450 -14.36116 -14.05599 -13.56990 -13.32387 -13.19688 -13.11641 -12.86714 -12.30464 -12.11776 -11.71200 -11.26934 -11.05627 -10.91453 -10.82836 -10.23217 -10.18996 -10.02183 -9.96450 -9.89734 -9.70064 -9.39278 -9.25867 -8.93787 -8.69282 -6.99055 -5.79890 -3.10301 0.63957 1.15546 2.98824 3.26584 3.42094 3.47152 3.48892 3.86538 4.09585 4.28093 4.53942 4.70045 4.80505 4.86317 4.87073 4.98151 5.15043 5.26056 5.31614 5.41693 5.52925 5.54449 5.75335 5.83425 5.87529 5.94761 6.02602 6.07164 6.20070 6.34148 6.43322 6.47435 6.50700 6.63857 6.87667 7.66427 7.74599 7.81059 8.37282 8.40669 9.49471 10.04269 10.39622 11.42241 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.005972 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.192641 B = 4687.652912 C = 6451.368286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.169 3.831 12 H 0.090 0.910 13 N -0.699 5.699 14 C 0.566 3.434 15 O -0.541 6.541 16 C -0.180 4.180 17 C -0.019 4.019 18 C -0.184 4.184 19 C 0.116 3.884 20 N -0.487 5.487 21 C 0.141 3.859 22 C -0.164 4.164 23 C -0.170 4.170 24 C -0.186 4.186 25 H 0.256 0.744 26 H 0.386 0.614 27 H 0.037 0.963 28 H 0.026 0.974 29 H 0.404 0.596 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.022 -14.578 6.168 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.019 3.981 11 C 0.064 3.936 12 H 0.108 0.892 13 N -0.349 5.349 14 C 0.353 3.647 15 O -0.421 6.421 16 C -0.185 4.185 17 C -0.046 4.046 18 C -0.204 4.204 19 C -0.041 4.041 20 N -0.195 5.195 21 C -0.017 4.017 22 C -0.183 4.183 23 C -0.208 4.208 24 C -0.222 4.222 25 H 0.065 0.935 26 H 0.220 0.780 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.240 0.760 30 H 0.164 0.836 31 H 0.158 0.842 32 H 0.176 0.824 33 H 0.178 0.822 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.832 -14.395 6.198 16.134 hybrid contribution 0.048 0.804 -0.381 0.891 sum -3.784 -13.591 5.817 15.260 Atomic orbital electron populations 1.69664 1.05118 1.25747 1.57303 1.24751 0.95499 0.97732 1.02732 0.86188 0.78639 0.83785 0.77533 1.21705 1.21776 1.20720 1.19200 0.91039 0.83988 1.43257 0.91081 1.42350 1.05971 0.99724 1.89650 1.20931 0.92987 0.85013 0.99120 1.20854 0.90092 0.92940 0.89692 0.89214 1.45882 1.14210 1.53849 1.20921 1.17944 0.81580 0.78970 0.86250 1.90679 1.76298 1.41994 1.33084 1.21069 0.96850 1.03653 0.96917 1.21725 0.91322 0.93584 0.97934 1.22133 1.01466 1.02000 0.94792 1.22990 0.92258 0.91399 0.97410 1.67720 1.04181 1.19422 1.28217 1.23082 0.98921 0.92080 0.87648 1.22653 1.01524 0.91363 1.02791 1.22899 1.02022 1.03081 0.92764 1.23262 1.00639 0.97469 1.00878 0.93460 0.78037 0.94523 0.95644 0.76039 0.83628 0.84219 0.82421 0.82166 0.87776 0.88705 0.89168 0.89881 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.06 55.49 0.72 -27.14 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -17.85 5.43 -59.91 -0.33 -18.17 16 10 C 0.15 2.82 5.80 -4.04 -0.02 2.80 16 11 C 0.17 2.80 2.43 -67.93 -0.17 2.63 16 12 H 0.09 1.69 7.33 -51.93 -0.38 1.31 16 13 N -0.70 -11.09 4.45 -54.75 -0.24 -11.33 16 14 C 0.57 9.21 7.11 -12.33 -0.09 9.12 16 15 O -0.54 -9.90 13.44 5.31 0.07 -9.83 16 16 C -0.18 -2.58 5.89 -104.82 -0.62 -3.20 16 17 C -0.02 -0.24 9.72 -38.87 -0.38 -0.61 16 18 C -0.18 -1.85 10.10 -39.50 -0.40 -2.25 16 19 C 0.12 1.27 11.17 -17.47 -0.20 1.07 16 20 N -0.49 -6.71 10.35 -12.91 -0.13 -6.85 16 21 C 0.14 1.97 10.71 -17.13 -0.18 1.79 16 22 C -0.16 -2.28 5.36 -90.62 -0.49 -2.77 16 23 C -0.17 -2.20 10.18 -26.69 -0.27 -2.47 16 24 C -0.19 -2.52 9.74 -26.69 -0.26 -2.78 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.39 10.08 7.33 -40.82 -0.30 9.78 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.40 6.07 6.67 -40.82 -0.27 5.80 16 30 H 0.15 1.69 7.74 -52.48 -0.41 1.29 16 31 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.16 1.19 8.06 -52.48 -0.42 0.77 16 33 H 0.16 2.08 6.42 -52.49 -0.34 1.74 16 34 H 0.10 1.35 8.11 -51.93 -0.42 0.92 16 35 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.12 1.82 5.02 -51.93 -0.26 1.56 16 LS Contribution 322.81 15.07 4.86 4.86 Total: -1.00 -32.03 322.81 -8.26 -40.28 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -4.88 Total: 14.89 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -3.31 Total: -3.87 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: 0.02 Total: -63.48 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.03 -8.26 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483542617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.761 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds