Wall clock time and date at job start Mon Mar 30 2020 01:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99559 * 2 1 4 4 H 1.48500 * 109.46951 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47313 * 30.00170 * 3 2 1 6 6 H 1.48501 * 109.46991 * 150.00211 * 3 2 1 7 7 C 1.38801 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00073 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99992 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47196 * 64.99810 * 11 10 9 13 13 N 1.46503 * 109.47269 * 304.99931 * 11 10 9 14 14 C 1.34773 * 120.00358 * 154.99590 * 13 11 10 15 15 O 1.21560 * 119.99774 * 0.02562 * 14 13 11 16 16 C 1.47838 * 120.00110 * 180.02562 * 14 13 11 17 17 C 1.40028 * 120.55947 * 179.72657 * 16 14 13 18 18 C 1.38349 * 118.28886 * 179.73451 * 17 16 14 19 19 C 1.38354 * 119.30272 * 0.54147 * 18 17 16 20 20 N 1.31922 * 121.08079 * 359.71563 * 19 18 17 21 21 C 1.31698 * 121.87734 * 0.02562 * 20 19 18 22 22 C 1.52997 * 109.47504 * 184.99959 * 11 10 9 23 23 C 1.53002 * 117.50022 * 248.74910 * 22 11 10 24 24 C 1.52997 * 117.50076 * 180.08715 * 22 11 10 25 25 H 0.97001 * 120.00803 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00401 * 359.97438 * 9 7 2 27 27 H 1.09002 * 109.47068 * 299.99856 * 10 9 7 28 28 H 1.09001 * 109.47372 * 59.99943 * 10 9 7 29 29 H 0.97007 * 119.99919 * 335.00159 * 13 11 10 30 30 H 1.08010 * 120.85323 * 359.97141 * 17 16 14 31 31 H 1.08006 * 120.35068 * 180.24081 * 18 17 16 32 32 H 1.08004 * 119.45656 * 179.74233 * 19 18 17 33 33 H 1.07997 * 119.71270 * 179.97438 * 21 20 19 34 34 H 1.09003 * 115.54905 * 34.41348 * 22 11 10 35 35 H 1.09000 * 117.49650 * 359.97438 * 23 22 11 36 36 H 1.09001 * 117.49817 * 145.01411 * 23 22 11 37 37 H 1.08996 * 117.49862 * 214.97497 * 24 22 11 38 38 H 1.08996 * 117.50355 * 359.97438 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 6 1.0640 -4.8197 -0.0022 12 1 0.4981 -4.8134 -0.9338 13 7 0.1441 -4.6764 1.1289 14 6 -1.0803 -5.2372 1.0770 15 8 -1.4212 -5.8623 0.0917 16 6 -2.0089 -5.0921 2.2182 17 6 -3.2858 -5.6650 2.1744 18 6 -4.1142 -5.5049 3.2708 19 6 -3.6633 -4.7811 4.3603 20 7 -2.4568 -4.2477 4.3714 21 6 -1.6299 -4.3768 3.3545 22 6 1.8248 -6.1411 0.1235 23 6 1.8349 -7.0690 -1.0930 24 6 1.0023 -7.4311 0.1394 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0016 27 1 2.6855 -3.7140 -0.8911 28 1 2.6842 -3.7148 0.8888 29 1 0.4162 -4.1777 1.9152 30 1 -3.6140 -6.2210 1.3085 31 1 -5.1044 -5.9362 3.2742 32 1 -4.3096 -4.6509 5.2158 33 1 -0.6500 -3.9252 3.4008 34 1 2.7234 -6.1095 0.7397 35 1 1.2991 -6.7382 -1.9828 36 1 2.7399 -7.6481 -1.2769 37 1 1.3599 -8.2483 0.7658 38 1 -0.0809 -7.3384 0.0608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483542617.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:19 Heat of formation + Delta-G solvation = 18.035399 kcal Electronic energy + Delta-G solvation = -20953.398596 eV Core-core repulsion = 17796.166557 eV Total energy + Delta-G solvation = -3157.232038 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.69637 -40.38109 -38.37215 -36.63754 -35.12031 -33.53956 -33.23982 -32.18848 -29.62710 -26.16289 -25.37219 -24.48356 -23.29299 -23.06416 -21.99980 -21.34694 -19.45807 -18.82798 -17.99834 -17.45587 -16.83399 -16.69791 -16.54293 -15.88548 -15.82259 -15.33816 -15.05230 -14.78075 -14.57248 -14.31644 -14.11158 -13.72790 -13.21690 -13.17135 -12.80089 -12.71770 -12.49527 -12.29372 -12.07826 -11.85441 -11.40535 -11.17363 -11.01130 -10.95265 -10.94825 -10.45265 -10.25023 -9.97066 -9.02447 -7.94652 -5.24609 -0.36163 0.20993 1.48550 1.49757 1.58202 1.81989 2.04756 2.55734 2.84993 3.00190 3.32600 3.39989 3.57287 3.73775 3.83352 3.90787 3.95985 4.04724 4.11417 4.16912 4.32783 4.44610 4.46766 4.62053 4.66817 4.82080 4.89086 5.01142 5.04278 5.08319 5.12956 5.29128 5.34990 5.49500 5.52930 5.60242 6.25427 6.48045 6.85091 7.14027 7.33121 8.05594 8.29566 9.28242 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.005972 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.192641 B = 4687.652912 C = 6451.368286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.073 4.073 3 Si 0.973 3.027 4 H -0.290 1.290 5 H -0.298 1.298 6 H -0.266 1.266 7 C -0.243 4.243 8 H 0.080 0.920 9 N -0.743 5.743 10 C 0.149 3.851 11 C 0.179 3.821 12 H 0.062 0.938 13 N -0.698 5.698 14 C 0.564 3.436 15 O -0.568 6.568 16 C -0.199 4.199 17 C -0.030 4.030 18 C -0.168 4.168 19 C 0.116 3.884 20 N -0.511 5.511 21 C 0.130 3.870 22 C -0.167 4.167 23 C -0.162 4.162 24 C -0.183 4.183 25 H 0.249 0.751 26 H 0.373 0.627 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.407 0.593 30 H 0.149 0.851 31 H 0.181 0.819 32 H 0.196 0.804 33 H 0.159 0.841 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.696 -15.505 7.263 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.217 1.217 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.386 5.386 10 C 0.023 3.977 11 C 0.074 3.926 12 H 0.080 0.920 13 N -0.347 5.347 14 C 0.352 3.648 15 O -0.449 6.449 16 C -0.205 4.205 17 C -0.056 4.056 18 C -0.187 4.187 19 C -0.040 4.040 20 N -0.220 5.220 21 C -0.028 4.028 22 C -0.186 4.186 23 C -0.199 4.199 24 C -0.220 4.220 25 H 0.058 0.942 26 H 0.205 0.795 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.243 0.757 30 H 0.167 0.833 31 H 0.198 0.802 32 H 0.213 0.787 33 H 0.176 0.824 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.135 0.865 37 H 0.122 0.878 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.457 -15.352 7.301 17.348 hybrid contribution -0.109 1.012 -0.700 1.235 sum -3.566 -14.341 6.601 16.185 Atomic orbital electron populations 1.69831 1.06684 1.25955 1.59438 1.25550 0.96284 1.01089 1.03646 0.85149 0.77824 0.79546 0.77269 1.21729 1.22485 1.19086 1.19628 0.91625 0.85023 1.41196 0.90174 1.42520 1.05606 1.00942 1.89562 1.21061 0.93322 0.83723 0.99635 1.20617 0.89509 0.93595 0.88890 0.92027 1.45854 1.14293 1.53868 1.20708 1.18277 0.81688 0.78338 0.86535 1.90657 1.76770 1.43245 1.34245 1.20988 0.97555 1.05447 0.96474 1.21957 0.90980 0.93569 0.99098 1.22537 1.02494 1.00523 0.93132 1.23689 0.91543 0.90057 0.98737 1.67750 1.05519 1.20498 1.28228 1.23070 0.99319 0.92482 0.87892 1.22571 1.01882 0.89957 1.04201 1.22988 1.02668 1.02405 0.91884 1.23202 0.99412 0.97660 1.01717 0.94182 0.79465 0.94238 0.94008 0.75665 0.83315 0.80178 0.78745 0.82351 0.85968 0.89908 0.86525 0.87835 0.88838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 3 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 4 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.24 -13.22 9.99 84.03 0.84 -12.38 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.74 -36.67 5.43 -343.45 -1.87 -38.53 16 10 C 0.15 5.67 5.80 86.38 0.50 6.17 16 11 C 0.18 6.00 2.43 44.99 0.11 6.11 16 12 H 0.06 2.42 7.33 -2.39 -0.02 2.41 16 13 N -0.70 -22.77 4.45 -445.41 -1.98 -24.75 16 14 C 0.56 19.01 7.11 86.78 0.62 19.63 16 15 O -0.57 -21.62 13.44 -3.91 -0.05 -21.67 16 16 C -0.20 -5.82 5.89 -19.99 -0.12 -5.94 16 17 C -0.03 -0.71 9.72 22.73 0.22 -0.49 16 18 C -0.17 -2.94 10.10 22.32 0.23 -2.71 16 19 C 0.12 2.25 11.17 84.71 0.95 3.19 16 20 N -0.51 -13.66 10.35 -194.76 -2.01 -15.67 16 21 C 0.13 3.69 10.71 85.02 0.91 4.60 16 22 C -0.17 -4.48 5.36 -10.80 -0.06 -4.53 16 23 C -0.16 -3.97 10.18 30.62 0.31 -3.66 16 24 C -0.18 -4.79 9.74 30.62 0.30 -4.49 16 25 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.37 20.12 7.33 -92.71 -0.68 19.44 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.41 12.63 6.67 -92.70 -0.62 12.01 16 30 H 0.15 3.42 7.74 -2.91 -0.02 3.39 16 31 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.20 2.20 8.06 -2.91 -0.02 2.17 16 33 H 0.16 4.30 6.42 -2.91 -0.02 4.29 16 34 H 0.12 2.87 8.11 -2.39 -0.02 2.85 16 35 H 0.08 2.24 8.05 -2.39 -0.02 2.22 16 36 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.10 2.27 8.14 -2.39 -0.02 2.26 16 38 H 0.09 2.96 5.02 -2.39 -0.01 2.95 16 Total: -1.00 -69.75 322.81 1.46 -68.29 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: -0.20 Total: 41.71 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 5.27 Total: 1.79 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -5.58 Total: -137.92 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.67 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -69.75 1.46 -68.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483542617.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.325 kcal (2) G-P(sol) polarization free energy of solvation -69.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds