Wall clock time and date at job start Mon Mar 30 2020 01:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00015 * 2 1 4 4 H 1.48503 * 109.47255 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47189 * 300.00087 * 3 2 1 6 6 H 1.48504 * 109.47055 * 60.00153 * 3 2 1 7 7 C 1.38809 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00179 * 179.72402 * 7 2 1 9 9 N 1.36942 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99583 * 174.68484 * 9 7 2 11 11 C 1.53004 * 115.55024 * 65.27855 * 10 9 7 12 12 N 1.46500 * 109.46948 * 80.38544 * 11 10 9 13 13 C 1.34773 * 120.00008 * 174.94227 * 12 11 10 14 14 O 1.21285 * 119.99891 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00207 * 180.02562 * 13 12 11 16 16 C 1.50702 * 109.47275 * 180.02562 * 15 13 12 17 17 C 1.38683 * 120.41740 * 269.72171 * 16 15 13 18 18 C 1.38622 * 118.42249 * 179.77920 * 17 16 15 19 19 C 1.38233 * 119.15647 * 0.51764 * 18 17 16 20 20 N 1.31850 * 120.76754 * 359.71796 * 19 18 17 21 21 C 1.31886 * 121.72439 * 0.02562 * 20 19 18 22 22 C 1.52999 * 117.49995 * 279.60185 * 10 9 7 23 23 C 1.53002 * 117.49538 * 210.94562 * 10 9 7 24 24 H 0.97000 * 119.99696 * 0.02562 * 1 2 3 25 25 H 0.96998 * 119.99921 * 354.68498 * 9 7 2 26 26 H 1.08994 * 109.47169 * 200.38629 * 11 10 9 27 27 H 1.08999 * 109.47048 * 320.39246 * 11 10 9 28 28 H 0.97001 * 120.00206 * 354.95307 * 12 11 10 29 29 H 1.09002 * 109.47042 * 300.00222 * 15 13 12 30 30 H 1.09002 * 109.47279 * 60.00557 * 15 13 12 31 31 H 1.08001 * 120.78458 * 0.02562 * 17 16 15 32 32 H 1.07997 * 120.42371 * 180.22097 * 18 17 16 33 33 H 1.08003 * 119.61746 * 179.74944 * 19 18 17 34 34 H 1.08003 * 119.61588 * 179.97438 * 21 20 19 35 35 H 1.08998 * 117.49974 * 0.02562 * 22 10 9 36 36 H 1.09000 * 117.49520 * 145.02518 * 22 10 9 37 37 H 1.09000 * 117.49687 * 214.98279 * 23 10 9 38 38 H 1.08995 * 117.49858 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3255 -2.3880 0.0005 10 6 2.0535 -3.6541 -0.1164 11 6 2.9803 -3.9928 1.0528 12 7 2.1924 -4.5505 2.1548 13 6 2.8116 -5.0182 3.2567 14 8 4.0211 -4.9770 3.3362 15 6 2.0012 -5.5925 4.3900 16 6 2.9259 -6.0400 5.4926 17 6 3.4225 -7.3348 5.5102 18 6 4.2737 -7.7010 6.5412 19 6 4.5883 -6.7733 7.5165 20 7 4.0935 -5.5521 7.4704 21 6 3.2850 -5.1675 6.5020 22 6 2.4933 -4.0894 -1.5157 23 6 1.3428 -4.8156 -0.8141 24 1 -0.4850 0.8401 -0.0004 25 1 0.3587 -2.3898 0.0780 26 1 3.7210 -4.7241 0.7293 27 1 3.4861 -3.0879 1.3895 28 1 1.2250 -4.5834 2.0913 29 1 1.3216 -4.8311 4.7730 30 1 1.4256 -6.4451 4.0296 31 1 3.1556 -8.0398 4.7367 32 1 4.6820 -8.6999 6.5846 33 1 5.2475 -7.0520 8.3254 34 1 2.8990 -4.1588 6.4980 35 1 2.2414 -3.4338 -2.3492 36 1 3.4428 -4.6176 -1.6032 37 1 1.5360 -5.8212 -0.4404 38 1 0.3337 -4.6380 -1.1857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483727677.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:53 Heat of formation + Delta-G solvation = 10.143215 kcal Electronic energy + Delta-G solvation = -20329.592526 eV Core-core repulsion = 17172.018257 eV Total energy + Delta-G solvation = -3157.574269 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36384 -40.37241 -38.94164 -35.29170 -34.78678 -34.49588 -32.80242 -31.65397 -29.62626 -27.21261 -25.93830 -24.48910 -23.53972 -23.10646 -21.29112 -20.61630 -19.15267 -18.17561 -17.90411 -17.44389 -17.28752 -16.76275 -16.18281 -15.79133 -15.71055 -15.43055 -15.03928 -14.76009 -14.32811 -14.16105 -13.91775 -13.89004 -13.56044 -13.00776 -12.96626 -12.82952 -12.43948 -12.28262 -12.18448 -11.99755 -11.59743 -11.16019 -10.97314 -10.73519 -10.55757 -10.39004 -9.98839 -9.88646 -9.03353 -7.97610 -5.25949 0.17437 0.38849 1.44409 1.46467 1.54946 1.69695 2.24401 2.51867 2.91512 3.13342 3.37003 3.52047 3.67049 3.74838 3.85313 3.94838 4.05447 4.12181 4.14400 4.21088 4.32124 4.51532 4.59578 4.76280 4.81508 4.83467 4.90875 4.95056 5.04908 5.19628 5.20501 5.33160 5.39243 5.52462 5.54633 5.81649 6.26153 6.65809 7.05007 7.31815 7.32796 8.05812 8.29340 9.24844 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020524 B = 0.003907 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.925563 B = 7165.344154 C = 8020.597765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.230 4.230 8 H 0.067 0.933 9 N -0.699 5.699 10 C 0.101 3.899 11 C 0.160 3.840 12 N -0.705 5.705 13 C 0.509 3.491 14 O -0.589 6.589 15 C -0.090 4.090 16 C -0.122 4.122 17 C -0.071 4.071 18 C -0.169 4.169 19 C 0.078 3.922 20 N -0.517 5.517 21 C 0.086 3.914 22 C -0.189 4.189 23 C -0.149 4.149 24 H 0.251 0.749 25 H 0.379 0.621 26 H 0.071 0.929 27 H 0.034 0.966 28 H 0.412 0.588 29 H 0.123 0.877 30 H 0.141 0.859 31 H 0.156 0.844 32 H 0.166 0.834 33 H 0.177 0.823 34 H 0.151 0.849 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.121 0.879 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.595 -19.154 8.834 21.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.361 4.361 8 H 0.085 0.915 9 N -0.337 5.337 10 C 0.008 3.992 11 C 0.034 3.966 12 N -0.355 5.355 13 C 0.297 3.703 14 O -0.470 6.470 15 C -0.130 4.130 16 C -0.125 4.125 17 C -0.097 4.097 18 C -0.189 4.189 19 C -0.079 4.079 20 N -0.226 5.226 21 C -0.070 4.070 22 C -0.229 4.229 23 C -0.186 4.186 24 H 0.060 0.940 25 H 0.212 0.788 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.248 0.752 29 H 0.141 0.859 30 H 0.159 0.841 31 H 0.174 0.826 32 H 0.184 0.816 33 H 0.194 0.806 34 H 0.168 0.832 35 H 0.095 0.905 36 H 0.123 0.877 37 H 0.139 0.861 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.801 -18.366 9.528 21.037 hybrid contribution -0.535 1.042 -0.863 1.455 sum 3.266 -17.324 8.665 19.644 Atomic orbital electron populations 1.69779 1.06188 1.25905 1.59467 1.25393 0.96275 1.00470 1.03783 0.85248 0.78210 0.80689 0.76692 1.19720 1.21910 1.22184 1.19427 0.91105 0.84910 1.40707 0.91468 1.41823 1.05428 0.99516 1.86972 1.20351 0.99183 0.87857 0.91767 1.20911 0.92913 0.96666 0.86124 1.45852 1.11281 1.61301 1.17076 1.21115 0.88240 0.77397 0.83570 1.90695 1.16572 1.58541 1.81219 1.20646 0.96939 1.04594 0.90786 1.20487 0.99991 0.95392 0.96607 1.21843 0.94383 0.95526 0.97941 1.22477 0.98839 1.02502 0.95042 1.23264 0.97260 0.88459 0.98892 1.67649 1.10011 1.19387 1.25585 1.22787 0.94035 0.99788 0.90368 1.23379 0.99427 1.03669 0.96451 1.23146 0.97138 0.95939 1.02381 0.93999 0.78798 0.91130 0.94745 0.75181 0.85867 0.84089 0.82587 0.81602 0.80580 0.83177 0.90541 0.87703 0.86125 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.74 13.06 21.65 0.28 -56.46 16 2 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 3 Si 0.96 46.04 29.55 68.60 2.03 48.06 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 7 C -0.23 -12.34 9.56 84.03 0.80 -11.54 16 8 H 0.07 3.62 7.77 -2.91 -0.02 3.60 16 9 N -0.70 -32.64 5.49 -303.32 -1.67 -34.31 16 10 C 0.10 3.60 2.15 3.60 0.01 3.61 16 11 C 0.16 5.54 5.73 86.38 0.49 6.03 16 12 N -0.70 -19.86 5.51 -463.06 -2.55 -22.41 16 13 C 0.51 14.38 7.82 87.66 0.69 15.07 16 14 O -0.59 -22.17 16.03 -3.04 -0.05 -22.22 16 15 C -0.09 -1.66 5.86 29.10 0.17 -1.49 16 16 C -0.12 -2.71 4.39 -19.77 -0.09 -2.80 16 17 C -0.07 -1.32 9.86 22.47 0.22 -1.09 16 18 C -0.17 -2.85 10.11 22.36 0.23 -2.63 16 19 C 0.08 1.59 11.18 84.69 0.95 2.54 16 20 N -0.52 -13.89 10.36 -195.84 -2.03 -15.92 16 21 C 0.09 2.25 10.86 84.67 0.92 3.17 16 22 C -0.19 -6.05 10.11 30.62 0.31 -5.74 16 23 C -0.15 -4.07 10.14 30.62 0.31 -3.76 16 24 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 25 H 0.38 18.80 8.04 -92.71 -0.75 18.06 16 26 H 0.07 2.29 7.94 -2.39 -0.02 2.27 16 27 H 0.03 1.46 7.73 -2.39 -0.02 1.44 16 28 H 0.41 9.88 8.48 -92.71 -0.79 9.09 16 29 H 0.12 1.92 8.09 -2.39 -0.02 1.90 16 30 H 0.14 1.55 8.09 -2.39 -0.02 1.53 16 31 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 32 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 33 H 0.18 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.10 2.88 8.08 -2.39 -0.02 2.86 16 37 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -72.79 333.79 1.04 -71.75 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.45 Total: 33.40 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: 5.48 Total: -1.89 kcal Atomic # 7 Polarization: -123.14 SS G_CDS: -5.97 Total: -129.10 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -72.79 1.04 -71.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483727677.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.895 kcal (2) G-P(sol) polarization free energy of solvation -72.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds