Wall clock time and date at job start Mon Mar 30 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00304 * 2 1 4 4 H 1.48498 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46710 * 300.00374 * 3 2 1 6 6 H 1.48500 * 109.47005 * 60.00032 * 3 2 1 7 7 C 1.38820 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00215 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47388 * 187.38325 * 10 9 7 12 12 H 1.08997 * 109.99827 * 313.11375 * 11 10 9 13 13 C 1.54328 * 109.88180 * 192.01674 * 11 10 9 14 14 C 1.55160 * 102.94038 * 218.39086 * 13 11 10 15 15 C 1.54684 * 101.67727 * 35.33996 * 14 13 11 16 16 N 1.47023 * 109.88122 * 74.21265 * 11 10 9 17 17 C 1.34780 * 125.64704 * 298.31962 * 16 11 10 18 18 O 1.21548 * 119.99709 * 3.32655 * 17 16 11 19 19 C 1.47836 * 119.99845 * 183.32570 * 17 16 11 20 20 C 1.40024 * 120.55488 * 158.18502 * 19 17 16 21 21 C 1.38362 * 118.28621 * 180.24433 * 20 19 17 22 22 C 1.38352 * 119.30431 * 359.75378 * 21 20 19 23 23 N 1.31935 * 121.07683 * 0.02562 * 22 21 20 24 24 C 1.31688 * 121.88130 * 359.97438 * 23 22 21 25 25 H 0.96999 * 119.99665 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99601 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.46882 * 67.38090 * 10 9 7 28 28 H 1.09003 * 109.47123 * 307.39008 * 10 9 7 29 29 H 1.08999 * 110.71740 * 336.75589 * 13 11 10 30 30 H 1.08996 * 110.71543 * 100.02734 * 13 11 10 31 31 H 1.09002 * 111.00137 * 153.58022 * 14 13 11 32 32 H 1.09000 * 111.00044 * 277.38804 * 14 13 11 33 33 H 1.09000 * 110.39251 * 204.36591 * 15 14 13 34 34 H 1.08995 * 110.24113 * 82.10795 * 15 14 13 35 35 H 1.07998 * 120.85907 * 0.02562 * 20 19 17 36 36 H 1.07996 * 120.34850 * 179.77545 * 21 20 19 37 37 H 1.07999 * 119.46653 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.71933 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0740 -4.8138 -0.1825 12 1 0.2212 -4.6876 0.4845 13 6 1.7786 -6.1544 0.1144 14 6 1.1806 -7.1057 -0.9555 15 6 1.0162 -6.1540 -2.1638 16 7 0.6145 -4.8621 -1.5782 17 6 -0.0664 -3.8888 -2.2151 18 8 -0.2973 -2.8383 -1.6489 19 6 -0.5325 -4.0989 -3.6023 20 6 -1.5915 -3.3429 -4.1196 21 6 -1.9928 -3.5820 -5.4220 22 6 -1.3379 -4.5472 -6.1660 23 7 -0.3398 -5.2414 -5.6534 24 6 0.0785 -5.0506 -4.4194 25 1 -0.4849 0.8401 0.0004 26 1 0.3556 -2.3880 0.0016 27 1 2.5827 -3.7734 0.9499 28 1 2.7795 -3.6599 -0.8155 29 1 2.8570 -6.0597 -0.0131 30 1 1.5370 -6.5028 1.1186 31 1 1.8708 -7.9172 -1.1862 32 1 0.2148 -7.4962 -0.6349 33 1 0.2413 -6.5233 -2.8355 34 1 1.9626 -6.0518 -2.6948 35 1 -2.0847 -2.5951 -3.5165 36 1 -2.8084 -3.0207 -5.8534 37 1 -1.6492 -4.7363 -7.1827 38 1 0.8985 -5.6390 -4.0351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483918935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:00 Heat of formation + Delta-G solvation = 52.563210 kcal Electronic energy + Delta-G solvation = -21660.164937 eV Core-core repulsion = 18504.430136 eV Total energy + Delta-G solvation = -3155.734800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.61391 -39.19886 -36.98059 -34.31134 -32.39043 -32.30181 -31.19717 -30.50456 -28.71771 -25.34690 -24.46966 -23.51622 -22.75949 -21.53144 -20.99933 -18.99933 -17.60619 -16.87122 -16.56877 -16.40928 -15.98105 -14.85123 -14.43669 -14.35810 -13.94341 -13.55248 -13.54082 -13.33164 -12.99895 -12.91246 -12.81024 -12.44255 -12.03833 -11.69684 -11.48725 -11.14129 -10.95845 -10.70769 -10.61286 -10.45982 -9.96454 -9.83187 -9.72584 -9.48399 -9.12011 -8.87987 -8.66051 -8.16971 -6.56497 -5.46500 -2.73225 0.80662 1.24994 3.23766 3.28641 3.55116 3.59976 3.62326 3.96883 4.28427 4.54664 4.63341 4.78144 4.80598 4.92820 4.97456 4.99874 5.08256 5.32702 5.40633 5.44176 5.50332 5.63942 5.74903 5.80036 5.85945 5.98938 6.05015 6.11397 6.16436 6.24026 6.45279 6.57883 6.65234 6.84027 7.00492 7.84564 7.88743 7.92857 8.62361 8.83295 9.84199 10.49966 10.89988 11.74504 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.006734 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.856759 B = 4156.919126 C = 5633.023513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.895 3.105 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.061 0.939 9 N -0.719 5.719 10 C 0.145 3.855 11 C 0.132 3.868 12 H 0.074 0.926 13 C -0.124 4.124 14 C -0.133 4.133 15 C 0.087 3.913 16 N -0.612 5.612 17 C 0.550 3.450 18 O -0.444 6.444 19 C -0.163 4.163 20 C -0.020 4.020 21 C -0.180 4.180 22 C 0.106 3.894 23 N -0.492 5.492 24 C 0.105 3.895 25 H 0.247 0.753 26 H 0.399 0.601 27 H 0.018 0.982 28 H 0.019 0.981 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.156 0.844 38 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.081 -16.713 -8.324 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.728 3.272 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.221 1.221 7 C -0.366 4.366 8 H 0.079 0.921 9 N -0.371 5.371 10 C 0.016 3.984 11 C 0.029 3.971 12 H 0.092 0.908 13 C -0.163 4.163 14 C -0.171 4.171 15 C -0.036 4.036 16 N -0.350 5.350 17 C 0.335 3.665 18 O -0.312 6.312 19 C -0.169 4.169 20 C -0.046 4.046 21 C -0.199 4.199 22 C -0.051 4.051 23 N -0.201 5.201 24 C -0.052 4.052 25 H 0.058 0.942 26 H 0.242 0.758 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.173 0.827 38 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.771 -16.525 -8.562 18.695 hybrid contribution -0.117 1.672 0.338 1.709 sum -1.887 -14.854 -8.223 17.083 Atomic orbital electron populations 1.69755 1.04740 1.24359 1.57579 1.24667 0.95359 0.97030 1.03693 0.86284 0.78778 0.85191 0.76983 1.20877 1.22240 1.22143 1.19187 0.90507 0.84731 1.42211 0.92102 1.42893 1.07130 0.98806 1.88306 1.20985 0.93240 0.86720 0.97497 1.21909 0.97572 0.95570 0.82091 0.90755 1.22644 1.00662 0.93606 0.99358 1.22748 1.01770 0.97339 0.95218 1.22636 0.99827 0.84375 0.96744 1.48302 1.56913 1.16521 1.13248 1.17792 0.79746 0.83632 0.85305 1.91008 1.52354 1.22798 1.65087 1.21127 0.99579 0.99699 0.96465 1.21820 0.92909 0.95099 0.94811 1.22133 1.02346 1.00417 0.95045 1.22912 0.90983 0.91372 0.99789 1.67727 1.13222 1.25980 1.13124 1.23833 0.98140 0.94122 0.89124 0.94250 0.75832 0.96477 0.96358 0.90277 0.90089 0.89959 0.90697 0.90247 0.91198 0.83373 0.84283 0.82654 0.81004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.68 13.06 55.49 0.72 -28.96 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.90 23.88 29.55 -169.99 -5.02 18.85 16 4 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 6 H -0.29 -7.80 7.11 56.52 0.40 -7.40 16 7 C -0.23 -7.11 9.99 -15.06 -0.15 -7.26 16 8 H 0.06 1.80 7.83 -52.48 -0.41 1.39 16 9 N -0.72 -19.86 4.15 -59.91 -0.25 -20.11 16 10 C 0.14 3.11 5.62 -4.05 -0.02 3.09 16 11 C 0.13 2.22 3.09 -66.95 -0.21 2.01 16 12 H 0.07 1.37 8.13 -51.93 -0.42 0.94 16 13 C -0.12 -1.43 6.46 -24.89 -0.16 -1.59 16 14 C -0.13 -1.23 7.07 -24.70 -0.17 -1.40 16 15 C 0.09 0.99 4.99 -2.65 -0.01 0.97 16 16 N -0.61 -10.00 3.07 -164.26 -0.50 -10.50 16 17 C 0.55 10.72 7.53 -12.33 -0.09 10.63 16 18 O -0.44 -11.12 12.71 5.32 0.07 -11.05 16 19 C -0.16 -2.66 5.79 -104.82 -0.61 -3.26 16 20 C -0.02 -0.30 9.72 -38.87 -0.38 -0.68 16 21 C -0.18 -2.11 10.10 -39.49 -0.40 -2.51 16 22 C 0.11 1.21 11.17 -17.47 -0.20 1.02 16 23 N -0.49 -6.61 10.35 -12.91 -0.13 -6.75 16 24 C 0.10 1.46 9.21 -17.13 -0.16 1.30 16 25 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 26 H 0.40 11.77 4.94 -40.82 -0.20 11.57 16 27 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.87 7.85 -51.93 -0.41 0.47 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.81 5.91 -51.93 -0.31 0.50 16 34 H 0.07 0.72 7.40 -51.93 -0.38 0.34 16 35 H 0.15 2.36 7.88 -52.49 -0.41 1.94 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.17 2.05 4.12 -52.49 -0.22 1.83 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -37.11 309.60 -7.96 -45.07 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.86 Total: 6.90 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.65 Total: 1.88 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -0.16 Total: -66.32 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.07 Total: -11.05 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.02 Total: 18.85 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -37.11 -7.96 -45.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483918935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.635 kcal (2) G-P(sol) polarization free energy of solvation -37.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds