Wall clock time and date at job start Mon Mar 30 2020 01:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00304 * 2 1 4 4 H 1.48498 * 109.47254 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46710 * 300.00374 * 3 2 1 6 6 H 1.48500 * 109.47005 * 60.00032 * 3 2 1 7 7 C 1.38820 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.46496 * 120.00215 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47388 * 187.38325 * 10 9 7 12 12 H 1.08997 * 109.99827 * 313.11375 * 11 10 9 13 13 C 1.54328 * 109.88180 * 192.01674 * 11 10 9 14 14 C 1.55160 * 102.94038 * 218.39086 * 13 11 10 15 15 C 1.54684 * 101.67727 * 35.33996 * 14 13 11 16 16 N 1.47023 * 109.88122 * 74.21265 * 11 10 9 17 17 C 1.34780 * 125.64704 * 298.31962 * 16 11 10 18 18 O 1.21548 * 119.99709 * 3.32655 * 17 16 11 19 19 C 1.47836 * 119.99845 * 183.32570 * 17 16 11 20 20 C 1.40024 * 120.55488 * 158.18502 * 19 17 16 21 21 C 1.38362 * 118.28621 * 180.24433 * 20 19 17 22 22 C 1.38352 * 119.30431 * 359.75378 * 21 20 19 23 23 N 1.31935 * 121.07683 * 0.02562 * 22 21 20 24 24 C 1.31688 * 121.88130 * 359.97438 * 23 22 21 25 25 H 0.96999 * 119.99665 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99601 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.46882 * 67.38090 * 10 9 7 28 28 H 1.09003 * 109.47123 * 307.39008 * 10 9 7 29 29 H 1.08999 * 110.71740 * 336.75589 * 13 11 10 30 30 H 1.08996 * 110.71543 * 100.02734 * 13 11 10 31 31 H 1.09002 * 111.00137 * 153.58022 * 14 13 11 32 32 H 1.09000 * 111.00044 * 277.38804 * 14 13 11 33 33 H 1.09000 * 110.39251 * 204.36591 * 15 14 13 34 34 H 1.08995 * 110.24113 * 82.10795 * 15 14 13 35 35 H 1.07998 * 120.85907 * 0.02562 * 20 19 17 36 36 H 1.07996 * 120.34850 * 179.77545 * 21 20 19 37 37 H 1.07999 * 119.46653 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.71933 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0740 -4.8138 -0.1825 12 1 0.2212 -4.6876 0.4845 13 6 1.7786 -6.1544 0.1144 14 6 1.1806 -7.1057 -0.9555 15 6 1.0162 -6.1540 -2.1638 16 7 0.6145 -4.8621 -1.5782 17 6 -0.0664 -3.8888 -2.2151 18 8 -0.2973 -2.8383 -1.6489 19 6 -0.5325 -4.0989 -3.6023 20 6 -1.5915 -3.3429 -4.1196 21 6 -1.9928 -3.5820 -5.4220 22 6 -1.3379 -4.5472 -6.1660 23 7 -0.3398 -5.2414 -5.6534 24 6 0.0785 -5.0506 -4.4194 25 1 -0.4849 0.8401 0.0004 26 1 0.3556 -2.3880 0.0016 27 1 2.5827 -3.7734 0.9499 28 1 2.7795 -3.6599 -0.8155 29 1 2.8570 -6.0597 -0.0131 30 1 1.5370 -6.5028 1.1186 31 1 1.8708 -7.9172 -1.1862 32 1 0.2148 -7.4962 -0.6349 33 1 0.2413 -6.5233 -2.8355 34 1 1.9626 -6.0518 -2.6948 35 1 -2.0847 -2.5951 -3.5165 36 1 -2.8084 -3.0207 -5.8534 37 1 -1.6492 -4.7363 -7.1827 38 1 0.8985 -5.6390 -4.0351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483918935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:00 Heat of formation + Delta-G solvation = 25.685998 kcal Electronic energy + Delta-G solvation = -21661.330420 eV Core-core repulsion = 18504.430136 eV Total energy + Delta-G solvation = -3156.900284 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.80253 -40.36218 -38.35698 -36.27084 -33.79896 -33.43424 -32.90457 -31.67285 -30.28200 -26.87862 -25.89662 -24.70495 -24.26372 -23.01822 -22.02670 -20.35484 -19.32395 -18.26030 -17.88622 -17.59339 -17.10249 -16.67055 -16.12344 -15.58636 -15.22296 -14.97368 -14.86694 -14.70557 -14.49483 -14.21101 -14.00196 -13.71899 -13.36765 -13.13995 -13.01314 -12.89295 -12.67436 -12.22875 -12.03295 -11.81722 -11.61571 -11.50222 -10.97648 -10.92451 -10.91019 -10.33979 -10.15035 -9.56610 -8.78159 -7.80669 -5.07696 -0.28537 0.17819 1.40213 1.43132 1.52390 1.96845 2.00300 2.58114 2.83469 3.30936 3.46900 3.53382 3.67525 3.77678 3.85225 3.93310 4.02781 4.06471 4.24280 4.37001 4.41253 4.45900 4.59685 4.67399 4.81638 4.83493 4.89030 5.01548 5.03295 5.11947 5.16063 5.18105 5.40635 5.47976 5.55657 5.61893 6.36515 6.60618 6.82319 7.29224 7.50622 8.34663 8.62096 9.41240 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014931 B = 0.006734 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.856759 B = 4156.919126 C = 5633.023513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.077 4.077 3 Si 0.967 3.033 4 H -0.268 1.268 5 H -0.298 1.298 6 H -0.290 1.290 7 C -0.243 4.243 8 H 0.063 0.937 9 N -0.735 5.735 10 C 0.141 3.859 11 C 0.131 3.869 12 H 0.050 0.950 13 C -0.114 4.114 14 C -0.117 4.117 15 C 0.077 3.923 16 N -0.611 5.611 17 C 0.540 3.460 18 O -0.517 6.517 19 C -0.190 4.190 20 C -0.043 4.043 21 C -0.168 4.168 22 C 0.117 3.883 23 N -0.500 5.500 24 C 0.113 3.887 25 H 0.242 0.758 26 H 0.388 0.612 27 H 0.026 0.974 28 H 0.011 0.989 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.124 0.876 36 H 0.172 0.828 37 H 0.200 0.800 38 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 -19.221 -10.146 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.270 4.270 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.226 1.226 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.081 0.919 9 N -0.385 5.385 10 C 0.013 3.987 11 C 0.027 3.973 12 H 0.068 0.932 13 C -0.152 4.152 14 C -0.155 4.155 15 C -0.044 4.044 16 N -0.346 5.346 17 C 0.328 3.672 18 O -0.392 6.392 19 C -0.195 4.195 20 C -0.070 4.070 21 C -0.188 4.188 22 C -0.040 4.040 23 N -0.209 5.209 24 C -0.044 4.044 25 H 0.051 0.949 26 H 0.228 0.772 27 H 0.044 0.956 28 H 0.029 0.971 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.100 0.900 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.142 0.858 36 H 0.190 0.810 37 H 0.217 0.783 38 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.633 -19.129 -10.388 21.777 hybrid contribution -0.465 2.357 0.828 2.541 sum -1.098 -16.772 -9.560 19.336 Atomic orbital electron populations 1.69970 1.06428 1.24694 1.59257 1.25534 0.96328 1.00689 1.04430 0.85169 0.78164 0.80461 0.76572 1.19221 1.22562 1.21761 1.19599 0.90787 0.86223 1.40934 0.91878 1.43145 1.06989 1.00196 1.88169 1.21196 0.93959 0.86268 0.97230 1.21897 0.96064 0.96871 0.82453 0.93230 1.22644 1.00685 0.90584 1.01280 1.22779 1.02958 0.97052 0.92703 1.23012 1.00926 0.82302 0.98146 1.48430 1.55397 1.17674 1.13124 1.18440 0.79106 0.83213 0.86453 1.90958 1.55529 1.25771 1.66935 1.20997 1.01217 1.01958 0.95310 1.21865 0.93440 0.95190 0.96458 1.22460 1.02740 1.00327 0.93250 1.23648 0.89399 0.89715 1.01213 1.67851 1.14004 1.26477 1.12523 1.24017 0.98082 0.93284 0.89030 0.94900 0.77156 0.95639 0.97069 0.89242 0.88296 0.86117 0.90032 0.88767 0.89541 0.85790 0.81009 0.78331 0.79226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -64.81 13.06 21.65 0.28 -64.53 16 2 C -0.08 -4.93 5.50 84.86 0.47 -4.46 16 3 Si 0.97 50.66 29.55 68.60 2.03 52.69 16 4 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.30 -15.64 7.11 99.48 0.71 -14.93 16 6 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 7 C -0.24 -15.24 9.99 84.04 0.84 -14.40 16 8 H 0.06 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.73 -42.59 4.15 -343.45 -1.42 -44.01 16 10 C 0.14 6.25 5.62 86.38 0.49 6.74 16 11 C 0.13 4.47 3.09 45.34 0.14 4.61 16 12 H 0.05 1.93 8.13 -2.39 -0.02 1.91 16 13 C -0.11 -2.34 6.46 31.79 0.21 -2.13 16 14 C -0.12 -1.72 7.07 31.91 0.23 -1.49 16 15 C 0.08 1.56 4.99 86.78 0.43 1.99 16 16 N -0.61 -20.18 3.07 -791.89 -2.43 -22.60 16 17 C 0.54 22.27 7.53 86.78 0.65 22.92 16 18 O -0.52 -28.10 12.71 -3.87 -0.05 -28.15 16 19 C -0.19 -6.32 5.79 -19.99 -0.12 -6.44 16 20 C -0.04 -1.34 9.72 22.73 0.22 -1.12 16 21 C -0.17 -3.66 10.10 22.33 0.23 -3.44 16 22 C 0.12 2.28 11.17 84.70 0.95 3.23 16 23 N -0.50 -12.06 10.35 -194.75 -2.01 -14.07 16 24 C 0.11 2.97 9.21 85.02 0.78 3.75 16 25 H 0.24 15.89 8.31 -92.71 -0.77 15.12 16 26 H 0.39 24.44 4.94 -92.71 -0.46 23.98 16 27 H 0.03 1.10 8.10 -2.39 -0.02 1.08 16 28 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 1.70 7.85 -2.39 -0.02 1.68 16 30 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.12 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.67 5.91 -2.39 -0.01 1.65 16 34 H 0.09 1.51 7.40 -2.39 -0.02 1.49 16 35 H 0.12 4.39 7.88 -2.91 -0.02 4.37 16 36 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 37 H 0.20 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.19 4.09 4.12 -2.91 -0.01 4.08 16 Total: -1.00 -87.01 309.60 2.52 -84.49 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.62 Total: 26.43 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 5.51 Total: 9.75 kcal Atomic # 7 Polarization: -139.63 SS G_CDS: -5.58 Total: -145.21 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.05 Total: -28.15 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 2.03 Total: 52.69 kcal Total: -87.01 2.52 -84.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483918935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.172 kcal (2) G-P(sol) polarization free energy of solvation -87.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds