Wall clock time and date at job start Mon Mar 30 2020 01:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47270 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47022 * 300.00588 * 3 2 1 6 6 H 1.48499 * 109.46777 * 60.00538 * 3 2 1 7 7 C 1.38814 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99996 * 173.69275 * 9 7 2 11 11 C 1.52999 * 112.85060 * 294.88897 * 10 9 7 12 12 N 1.46507 * 109.46692 * 292.10836 * 11 10 9 13 13 C 1.34780 * 119.99695 * 180.85472 * 12 11 10 14 14 O 1.21560 * 120.00192 * 0.02562 * 13 12 11 15 15 C 1.47841 * 120.00018 * 179.97438 * 13 12 11 16 16 C 1.40024 * 120.55765 * 180.02562 * 15 13 12 17 17 C 1.38358 * 118.28465 * 180.25427 * 16 15 13 18 18 C 1.38352 * 119.30339 * 359.45227 * 17 16 15 19 19 N 1.31928 * 121.07890 * 0.56249 * 18 17 16 20 20 C 1.31689 * 121.87834 * 359.71586 * 19 18 17 21 21 C 1.53781 * 113.61589 * 66.08343 * 10 9 7 22 22 C 1.53955 * 87.02221 * 89.22829 * 21 10 9 23 23 C 1.53778 * 113.61472 * 163.69020 * 10 9 7 24 24 H 0.97002 * 119.99966 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00485 * 353.69380 * 9 7 2 26 26 H 1.09002 * 109.47508 * 172.11088 * 11 10 9 27 27 H 1.09001 * 109.47408 * 52.10683 * 11 10 9 28 28 H 0.96992 * 120.00185 * 0.85321 * 12 11 10 29 29 H 1.07995 * 120.86056 * 359.97438 * 16 15 13 30 30 H 1.07996 * 120.34925 * 179.72391 * 17 16 15 31 31 H 1.07998 * 119.46158 * 180.27590 * 18 17 16 32 32 H 1.08008 * 119.71518 * 179.97438 * 20 19 18 33 33 H 1.08998 * 113.61391 * 203.75313 * 21 10 9 34 34 H 1.09005 * 113.61124 * 334.64988 * 21 10 9 35 35 H 1.08994 * 113.53713 * 270.81591 * 22 21 10 36 36 H 1.09000 * 113.66317 * 139.93346 * 22 21 10 37 37 H 1.08996 * 113.61451 * 25.35297 * 23 10 9 38 38 H 1.09004 * 113.61292 * 156.25287 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0513 -3.6529 -0.1405 11 6 2.7358 -3.7978 -1.5011 12 7 1.7190 -3.9301 -2.5476 13 6 2.0917 -4.0882 -3.8331 14 8 3.2715 -4.1215 -4.1243 15 6 1.0657 -4.2224 -4.8891 16 6 1.4398 -4.3877 -6.2283 17 6 0.4409 -4.5032 -7.1786 18 6 -0.8828 -4.4636 -6.7779 19 7 -1.2056 -4.3069 -5.5083 20 6 -0.2915 -4.1870 -4.5680 21 6 2.9728 -3.9694 1.0493 22 6 1.7652 -4.6744 1.6936 23 6 1.2267 -4.8848 0.2685 24 1 -0.4850 0.8401 0.0004 25 1 0.3600 -2.3907 0.0921 26 1 3.3699 -4.6844 -1.4964 27 1 3.3458 -2.9159 -1.6968 28 1 0.7777 -3.9040 -2.3152 29 1 2.4812 -4.4196 -6.5126 30 1 0.6917 -4.6274 -8.2216 31 1 -1.6645 -4.5581 -7.5170 32 1 -0.5952 -4.0596 -3.5393 33 1 3.7911 -4.6449 0.8002 34 1 3.3037 -3.0843 1.5927 35 1 1.1475 -4.0125 2.3004 36 1 2.0219 -5.6022 2.2048 37 1 0.1502 -4.7378 0.1824 38 1 1.5668 -5.8112 -0.1944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484622652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:33 Heat of formation + Delta-G solvation = 32.788356 kcal Electronic energy + Delta-G solvation = -21029.084436 eV Core-core repulsion = 17872.492133 eV Total energy + Delta-G solvation = -3156.592302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51010 -39.22724 -38.22094 -34.11055 -33.29603 -32.54961 -31.55670 -30.02056 -27.37848 -25.32998 -24.48466 -23.76053 -23.41844 -21.71002 -20.37622 -18.48737 -17.83246 -17.14595 -16.77664 -16.40872 -15.40184 -15.03241 -14.91626 -14.73219 -14.32106 -14.00155 -13.71745 -13.33951 -13.26690 -13.11892 -12.68239 -12.26803 -12.08729 -11.80208 -11.27022 -11.04009 -10.88056 -10.38503 -10.26833 -10.16755 -10.00707 -9.98648 -9.75425 -9.52777 -9.40425 -9.30086 -8.91551 -8.57695 -7.07359 -5.85236 -3.15254 0.62941 1.12637 3.03644 3.39536 3.45076 3.47246 3.47962 3.87893 4.24826 4.51556 4.68137 4.79079 4.85375 4.98354 5.15122 5.23048 5.26604 5.31443 5.40290 5.46464 5.54174 5.74913 5.92698 5.95222 6.05933 6.10962 6.16751 6.29979 6.35404 6.45673 6.49210 6.67074 6.83189 6.92843 7.01359 7.68144 7.76536 7.85299 8.33391 8.47798 9.44900 9.97840 10.33099 11.36738 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014652 B = 0.005566 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.492274 B = 5029.293285 C = 5913.979603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.700 5.700 10 C 0.172 3.828 11 C 0.119 3.881 12 N -0.696 5.696 13 C 0.556 3.444 14 O -0.548 6.548 15 C -0.179 4.179 16 C -0.021 4.021 17 C -0.183 4.183 18 C 0.114 3.886 19 N -0.487 5.487 20 C 0.138 3.862 21 C -0.150 4.150 22 C -0.128 4.128 23 C -0.146 4.146 24 H 0.255 0.745 25 H 0.386 0.614 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.400 0.600 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 -11.942 -8.374 14.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.340 5.340 10 C 0.079 3.921 11 C -0.007 4.007 12 N -0.345 5.345 13 C 0.342 3.658 14 O -0.427 6.427 15 C -0.184 4.184 16 C -0.047 4.047 17 C -0.203 4.203 18 C -0.042 4.042 19 N -0.195 5.195 20 C -0.021 4.021 21 C -0.190 4.190 22 C -0.165 4.165 23 C -0.184 4.184 24 H 0.065 0.935 25 H 0.221 0.779 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.236 0.764 29 H 0.164 0.836 30 H 0.158 0.842 31 H 0.176 0.824 32 H 0.178 0.822 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.140 -11.762 -8.316 14.406 hybrid contribution 0.578 1.120 -0.152 1.269 sum 0.438 -10.642 -8.467 13.607 Atomic orbital electron populations 1.69658 1.05060 1.25690 1.57311 1.24729 0.95471 0.97650 1.02564 0.86168 0.78978 0.84203 0.77160 1.20470 1.21896 1.21846 1.19140 0.91114 0.83586 1.42918 0.91045 1.42077 1.06150 0.99052 1.86736 1.20832 0.93114 0.87509 0.90624 1.21938 0.90363 1.00821 0.87530 1.45707 1.11156 1.71577 1.06050 1.17995 0.87927 0.77290 0.82610 1.90742 1.17980 1.51651 1.82361 1.21144 0.95294 1.06463 0.95467 1.21738 1.00998 0.90837 0.91171 1.22140 0.93928 1.03312 1.00918 1.22987 0.95402 0.92878 0.92981 1.67718 1.37958 1.12346 1.01499 1.23084 0.87927 0.91705 0.99357 1.23338 0.96350 1.00388 0.98957 1.22659 0.98484 0.99536 0.95869 1.23157 0.99944 0.97805 0.97457 0.93500 0.77899 0.92440 0.91032 0.76446 0.83634 0.84210 0.82401 0.82168 0.91291 0.90652 0.90004 0.92695 0.91584 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.76 13.07 55.49 0.73 -26.04 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.14 9.04 -15.06 -0.14 -6.28 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.70 -15.75 5.18 -46.48 -0.24 -15.99 16 10 C 0.17 3.09 0.80 -131.01 -0.10 2.99 16 11 C 0.12 2.15 5.08 -4.04 -0.02 2.13 16 12 N -0.70 -11.70 5.37 -61.24 -0.33 -12.03 16 13 C 0.56 9.63 7.78 -12.33 -0.10 9.53 16 14 O -0.55 -11.03 16.42 5.31 0.09 -10.94 16 15 C -0.18 -2.61 5.89 -104.82 -0.62 -3.23 16 16 C -0.02 -0.26 9.72 -38.87 -0.38 -0.64 16 17 C -0.18 -1.82 10.10 -39.50 -0.40 -2.22 16 18 C 0.11 1.22 11.17 -17.47 -0.20 1.02 16 19 N -0.49 -6.57 10.35 -12.91 -0.13 -6.71 16 20 C 0.14 1.91 10.71 -17.14 -0.18 1.72 16 21 C -0.15 -2.50 7.29 -25.83 -0.19 -2.69 16 22 C -0.13 -1.93 8.00 -25.82 -0.21 -2.14 16 23 C -0.15 -2.16 7.05 -25.92 -0.18 -2.34 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.39 9.29 7.87 -40.82 -0.32 8.96 16 26 H 0.06 0.96 8.02 -51.93 -0.42 0.55 16 27 H 0.07 1.51 7.80 -51.93 -0.41 1.10 16 28 H 0.40 6.23 6.37 -40.82 -0.26 5.97 16 29 H 0.15 1.74 7.74 -52.49 -0.41 1.33 16 30 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.16 2.04 6.42 -52.48 -0.34 1.71 16 33 H 0.07 1.01 8.01 -51.93 -0.42 0.59 16 34 H 0.07 1.41 7.87 -51.93 -0.41 1.00 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.97 8.09 -51.93 -0.42 0.55 16 38 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 324.22 15.07 4.89 4.89 Total: -1.00 -31.09 324.22 -7.88 -38.97 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.05 Total: 13.24 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -2.80 Total: -2.45 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.02 Total: -60.76 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.09 -7.88 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484622652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.759 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds