Wall clock time and date at job start Mon Mar 30 2020 01:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47270 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47022 * 300.00588 * 3 2 1 6 6 H 1.48499 * 109.46777 * 60.00538 * 3 2 1 7 7 C 1.38814 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99983 * 179.97438 * 7 2 1 9 9 N 1.36932 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99996 * 173.69275 * 9 7 2 11 11 C 1.52999 * 112.85060 * 294.88897 * 10 9 7 12 12 N 1.46507 * 109.46692 * 292.10836 * 11 10 9 13 13 C 1.34780 * 119.99695 * 180.85472 * 12 11 10 14 14 O 1.21560 * 120.00192 * 0.02562 * 13 12 11 15 15 C 1.47841 * 120.00018 * 179.97438 * 13 12 11 16 16 C 1.40024 * 120.55765 * 180.02562 * 15 13 12 17 17 C 1.38358 * 118.28465 * 180.25427 * 16 15 13 18 18 C 1.38352 * 119.30339 * 359.45227 * 17 16 15 19 19 N 1.31928 * 121.07890 * 0.56249 * 18 17 16 20 20 C 1.31689 * 121.87834 * 359.71586 * 19 18 17 21 21 C 1.53781 * 113.61589 * 66.08343 * 10 9 7 22 22 C 1.53955 * 87.02221 * 89.22829 * 21 10 9 23 23 C 1.53778 * 113.61472 * 163.69020 * 10 9 7 24 24 H 0.97002 * 119.99966 * 359.97438 * 1 2 3 25 25 H 0.97004 * 120.00485 * 353.69380 * 9 7 2 26 26 H 1.09002 * 109.47508 * 172.11088 * 11 10 9 27 27 H 1.09001 * 109.47408 * 52.10683 * 11 10 9 28 28 H 0.96992 * 120.00185 * 0.85321 * 12 11 10 29 29 H 1.07995 * 120.86056 * 359.97438 * 16 15 13 30 30 H 1.07996 * 120.34925 * 179.72391 * 17 16 15 31 31 H 1.07998 * 119.46158 * 180.27590 * 18 17 16 32 32 H 1.08008 * 119.71518 * 179.97438 * 20 19 18 33 33 H 1.08998 * 113.61391 * 203.75313 * 21 10 9 34 34 H 1.09005 * 113.61124 * 334.64988 * 21 10 9 35 35 H 1.08994 * 113.53713 * 270.81591 * 22 21 10 36 36 H 1.09000 * 113.66317 * 139.93346 * 22 21 10 37 37 H 1.08996 * 113.61451 * 25.35297 * 23 10 9 38 38 H 1.09004 * 113.61292 * 156.25287 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0513 -3.6529 -0.1405 11 6 2.7358 -3.7978 -1.5011 12 7 1.7190 -3.9301 -2.5476 13 6 2.0917 -4.0882 -3.8331 14 8 3.2715 -4.1215 -4.1243 15 6 1.0657 -4.2224 -4.8891 16 6 1.4398 -4.3877 -6.2283 17 6 0.4409 -4.5032 -7.1786 18 6 -0.8828 -4.4636 -6.7779 19 7 -1.2056 -4.3069 -5.5083 20 6 -0.2915 -4.1870 -4.5680 21 6 2.9728 -3.9694 1.0493 22 6 1.7652 -4.6744 1.6936 23 6 1.2267 -4.8848 0.2685 24 1 -0.4850 0.8401 0.0004 25 1 0.3600 -2.3907 0.0921 26 1 3.3699 -4.6844 -1.4964 27 1 3.3458 -2.9159 -1.6968 28 1 0.7777 -3.9040 -2.3152 29 1 2.4812 -4.4196 -6.5126 30 1 0.6917 -4.6274 -8.2216 31 1 -1.6645 -4.5581 -7.5170 32 1 -0.5952 -4.0596 -3.5393 33 1 3.7911 -4.6449 0.8002 34 1 3.3037 -3.0843 1.5927 35 1 1.1475 -4.0125 2.3004 36 1 2.0219 -5.6022 2.2048 37 1 0.1502 -4.7378 0.1824 38 1 1.5668 -5.8112 -0.1944 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484622652.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:33 Heat of formation + Delta-G solvation = 11.318657 kcal Electronic energy + Delta-G solvation = -21030.015432 eV Core-core repulsion = 17872.492133 eV Total energy + Delta-G solvation = -3157.523298 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.62335 -40.52850 -39.56121 -35.49838 -35.21929 -33.54204 -32.58979 -31.85671 -28.80217 -26.72838 -25.93468 -25.18700 -24.47040 -23.05008 -21.67206 -19.85050 -19.23064 -18.97254 -17.82107 -17.50340 -16.85846 -16.34419 -16.28770 -16.05484 -15.80532 -15.44087 -15.08285 -14.80039 -14.54757 -14.23076 -14.08549 -13.67523 -13.17337 -13.09009 -12.97565 -12.94075 -12.56588 -12.15034 -11.94461 -11.62747 -11.50438 -11.34196 -10.98065 -10.93267 -10.78712 -10.47588 -10.30861 -9.96594 -8.99523 -7.94990 -5.21682 -0.37554 0.19350 1.42823 1.45482 1.52919 1.81236 2.16733 2.53577 2.84652 3.30278 3.38364 3.71262 3.74096 3.81007 3.81950 3.92138 3.98595 4.01597 4.10091 4.22454 4.44639 4.60678 4.67349 4.82433 4.88553 4.91531 5.00043 5.00834 5.11413 5.13324 5.29377 5.41315 5.45772 5.58530 5.61678 5.70482 6.29481 6.49998 6.83773 7.13134 7.35774 8.09408 8.33067 9.27587 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.014652 B = 0.005566 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.492274 B = 5029.293285 C = 5913.979603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.066 4.066 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.300 1.300 6 H -0.293 1.293 7 C -0.221 4.221 8 H 0.067 0.933 9 N -0.705 5.705 10 C 0.157 3.843 11 C 0.128 3.872 12 N -0.694 5.694 13 C 0.554 3.446 14 O -0.583 6.583 15 C -0.200 4.200 16 C -0.030 4.030 17 C -0.166 4.166 18 C 0.117 3.883 19 N -0.509 5.509 20 C 0.131 3.869 21 C -0.148 4.148 22 C -0.120 4.120 23 C -0.129 4.129 24 H 0.249 0.751 25 H 0.377 0.623 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.406 0.594 29 H 0.147 0.853 30 H 0.181 0.819 31 H 0.197 0.803 32 H 0.161 0.839 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.344 -13.713 -9.706 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.259 4.259 3 Si 0.786 3.214 4 H -0.197 1.197 5 H -0.227 1.227 6 H -0.220 1.220 7 C -0.353 4.353 8 H 0.085 0.915 9 N -0.345 5.345 10 C 0.065 3.935 11 C 0.002 3.998 12 N -0.343 5.343 13 C 0.342 3.658 14 O -0.465 6.465 15 C -0.205 4.205 16 C -0.057 4.057 17 C -0.185 4.185 18 C -0.039 4.039 19 N -0.218 5.218 20 C -0.027 4.027 21 C -0.188 4.188 22 C -0.157 4.157 23 C -0.167 4.167 24 H 0.058 0.942 25 H 0.211 0.789 26 H 0.093 0.907 27 H 0.052 0.948 28 H 0.242 0.758 29 H 0.165 0.835 30 H 0.199 0.801 31 H 0.214 0.786 32 H 0.178 0.822 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.258 -13.569 -9.635 16.644 hybrid contribution 0.644 1.575 0.166 1.710 sum 0.386 -11.994 -9.469 15.286 Atomic orbital electron populations 1.69772 1.06060 1.25624 1.59732 1.25324 0.96183 1.00220 1.04187 0.85335 0.78338 0.81247 0.76472 1.19690 1.22727 1.22007 1.19340 0.91035 0.84892 1.40036 0.91482 1.42120 1.05800 0.99891 1.86645 1.21141 0.94390 0.87034 0.90920 1.21773 0.90455 0.99875 0.87732 1.45692 1.11220 1.71355 1.05986 1.18444 0.88092 0.76221 0.83060 1.90708 1.19519 1.53428 1.82885 1.20986 0.94806 1.09137 0.95613 1.21957 1.01984 0.90882 0.90878 1.22543 0.92835 1.00879 1.02275 1.23708 0.96908 0.90706 0.92575 1.67767 1.38028 1.13275 1.02736 1.23075 0.87723 0.92087 0.99830 1.23359 0.97520 1.00133 0.97827 1.22585 0.97001 1.00213 0.95944 1.23121 0.99659 0.96933 0.96949 0.94216 0.78935 0.90706 0.94763 0.75760 0.83481 0.80120 0.78603 0.82199 0.88674 0.93323 0.92024 0.89556 0.91417 0.87697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.68 13.07 21.65 0.28 -56.40 16 2 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 3 Si 0.96 46.32 29.55 68.60 2.03 48.35 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.78 7.11 99.48 0.71 -14.08 16 6 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 7 C -0.22 -11.68 9.04 84.03 0.76 -10.92 16 8 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 9 N -0.71 -32.21 5.18 -300.97 -1.56 -33.77 16 10 C 0.16 5.54 0.80 4.13 0.00 5.54 16 11 C 0.13 4.60 5.08 86.38 0.44 5.04 16 12 N -0.69 -23.45 5.37 -465.95 -2.50 -25.96 16 13 C 0.55 19.40 7.78 86.78 0.68 20.07 16 14 O -0.58 -23.86 16.42 -3.91 -0.06 -23.93 16 15 C -0.20 -5.79 5.89 -19.99 -0.12 -5.91 16 16 C -0.03 -0.72 9.72 22.73 0.22 -0.50 16 17 C -0.17 -2.75 10.10 22.33 0.23 -2.52 16 18 C 0.12 2.12 11.17 84.71 0.95 3.07 16 19 N -0.51 -12.90 10.35 -194.75 -2.01 -14.92 16 20 C 0.13 3.56 10.71 85.02 0.91 4.47 16 21 C -0.15 -4.76 7.29 31.18 0.23 -4.53 16 22 C -0.12 -3.37 8.00 31.18 0.25 -3.12 16 23 C -0.13 -3.55 7.05 31.12 0.22 -3.33 16 24 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 25 H 0.38 18.50 7.87 -92.71 -0.73 17.77 16 26 H 0.07 2.43 8.02 -2.39 -0.02 2.41 16 27 H 0.03 1.48 7.80 -2.39 -0.02 1.46 16 28 H 0.41 12.73 6.37 -92.71 -0.59 12.14 16 29 H 0.15 3.37 7.74 -2.91 -0.02 3.35 16 30 H 0.18 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.16 4.14 6.42 -2.91 -0.02 4.12 16 33 H 0.09 2.55 8.01 -2.39 -0.02 2.53 16 34 H 0.05 1.81 7.87 -2.38 -0.02 1.80 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 1.88 8.09 -2.39 -0.02 1.86 16 38 H 0.10 2.38 8.10 -2.39 -0.02 2.36 16 Total: -1.00 -68.89 324.22 1.16 -67.73 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.23 Total: 34.78 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 5.23 Total: 4.11 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -5.80 Total: -131.04 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.06 Total: -23.93 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -68.89 1.16 -67.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484622652.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.050 kcal (2) G-P(sol) polarization free energy of solvation -68.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds