Wall clock time and date at job start Mon Mar 30 2020 01:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00320 * 2 1 4 4 H 1.48499 * 109.46957 * 240.00495 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47203 * 120.00199 * 3 2 1 7 7 C 1.38817 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99479 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99886 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46810 * 179.97438 * 10 9 7 12 12 H 1.08998 * 112.85038 * 43.80987 * 11 10 9 13 13 C 1.53787 * 113.60890 * 175.00176 * 11 10 9 14 14 C 1.53784 * 87.07923 * 139.98364 * 13 11 10 15 15 H 1.09004 * 113.61162 * 220.01809 * 14 13 11 16 16 N 1.46499 * 113.61434 * 89.11404 * 14 13 11 17 17 C 1.34778 * 119.99940 * 155.00095 * 16 14 13 18 18 O 1.21516 * 119.99929 * 359.97438 * 17 16 14 19 19 C 1.48152 * 120.00073 * 179.97438 * 17 16 14 20 20 C 1.39817 * 120.91848 * 359.71864 * 19 17 16 21 21 C 1.38154 * 118.99627 * 179.75391 * 20 19 17 22 22 N 1.31810 * 120.89616 * 0.53436 * 21 20 19 23 23 C 1.31815 * 122.05087 * 359.73739 * 22 21 20 24 24 C 1.38148 * 120.89567 * 359.97438 * 23 22 21 25 25 C 1.53779 * 87.08045 * 334.56667 * 14 13 11 26 26 H 0.97001 * 120.00068 * 359.97438 * 1 2 3 27 27 H 0.96999 * 120.00230 * 0.02562 * 9 7 2 28 28 H 1.09003 * 109.46643 * 60.00071 * 10 9 7 29 29 H 1.08993 * 109.47454 * 300.00167 * 10 9 7 30 30 H 1.09004 * 113.61202 * 254.53117 * 13 11 10 31 31 H 1.08994 * 113.61447 * 25.43549 * 13 11 10 32 32 H 0.97000 * 120.00274 * 334.99936 * 16 14 13 33 33 H 1.07997 * 120.50369 * 359.97438 * 20 19 17 34 34 H 1.08000 * 119.55445 * 180.27371 * 21 20 19 35 35 H 1.08001 * 119.55459 * 180.02562 * 23 22 21 36 36 H 1.07998 * 120.50425 * 180.02562 * 24 23 22 37 37 H 1.09006 * 113.61307 * 270.88660 * 25 14 13 38 38 H 1.08999 * 113.69146 * 139.99146 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0636 -4.8197 0.0001 12 1 0.2373 -4.6705 -0.6950 13 6 1.7302 -6.2002 -0.1226 14 6 0.7049 -6.6997 0.9090 15 1 1.1237 -7.3889 1.6423 16 7 -0.5387 -7.1905 0.3101 17 6 -1.2954 -8.0897 0.9700 18 8 -0.9459 -8.4935 2.0615 19 6 -2.5534 -8.5857 0.3647 20 6 -2.9767 -8.1297 -0.8874 21 6 -4.1537 -8.6227 -1.4169 22 7 -4.8782 -9.5019 -0.7538 23 6 -4.5183 -9.9535 0.4311 24 6 -3.3530 -9.5184 1.0322 25 6 0.6171 -5.2478 1.4080 26 1 -0.4850 0.8400 0.0004 27 1 0.3555 -2.3880 -0.0005 28 1 2.6846 -3.7146 0.8895 29 1 2.6846 -3.7147 -0.8904 30 1 1.6159 -6.6542 -1.1070 31 1 2.7585 -6.2220 0.2380 32 1 -0.8176 -6.8685 -0.5613 33 1 -2.3907 -7.4057 -1.4340 34 1 -4.4869 -8.2800 -2.3853 35 1 -5.1424 -10.6742 0.9386 36 1 -3.0639 -9.8930 2.0030 37 1 1.3413 -5.0093 2.1871 38 1 -0.3952 -4.9317 1.6599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485672029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:13 Heat of formation + Delta-G solvation = 32.882055 kcal Electronic energy + Delta-G solvation = -20048.210588 eV Core-core repulsion = 16891.622349 eV Total energy + Delta-G solvation = -3156.588239 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.94554 -39.79769 -38.26424 -34.64524 -33.66593 -32.56506 -31.55383 -30.79863 -27.02726 -25.57192 -25.14438 -23.84044 -23.25059 -21.55306 -21.20270 -19.21874 -18.47905 -17.11342 -16.79573 -16.08136 -15.80209 -15.60303 -15.27565 -14.83380 -14.42154 -14.19088 -14.13765 -13.90796 -13.62764 -13.36192 -12.81255 -12.42812 -12.18617 -12.07139 -11.72056 -11.06103 -10.82968 -10.62006 -10.41985 -10.38455 -10.25503 -10.14683 -9.89595 -9.81611 -9.63348 -9.57779 -9.14346 -8.85878 -6.91915 -5.77016 -3.05368 0.37305 0.71955 2.62636 2.80512 3.43491 3.47774 3.48886 3.52515 4.05620 4.22283 4.40405 4.56100 4.58586 4.61284 4.70432 4.75977 5.04028 5.07276 5.13953 5.37770 5.43197 5.56933 5.62482 5.69064 5.80479 5.88028 5.94259 6.05650 6.16489 6.21171 6.24869 6.37692 6.55174 6.75316 6.89358 7.24392 7.53218 7.68765 7.91460 8.42194 9.53121 10.11905 10.46297 11.45899 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.003132 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.163556 B = 8938.900591 C = 9564.407646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.114 4.114 12 H 0.087 0.913 13 C -0.137 4.137 14 C 0.114 3.886 15 H 0.102 0.898 16 N -0.699 5.699 17 C 0.559 3.441 18 O -0.530 6.530 19 C -0.085 4.085 20 C -0.141 4.141 21 C 0.097 3.903 22 N -0.471 5.471 23 C 0.095 3.905 24 C -0.116 4.116 25 C -0.138 4.138 26 H 0.255 0.745 27 H 0.383 0.617 28 H 0.020 0.980 29 H 0.019 0.981 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.402 0.598 33 H 0.141 0.859 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.093 0.907 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 -20.467 -1.831 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.133 4.133 12 H 0.106 0.894 13 C -0.176 4.176 14 C 0.009 3.991 15 H 0.120 0.880 16 N -0.350 5.350 17 C 0.345 3.655 18 O -0.406 6.406 19 C -0.096 4.096 20 C -0.161 4.161 21 C -0.059 4.059 22 N -0.181 5.181 23 C -0.062 4.062 24 C -0.137 4.137 25 C -0.177 4.177 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.238 0.762 33 H 0.159 0.841 34 H 0.181 0.819 35 H 0.181 0.819 36 H 0.166 0.834 37 H 0.111 0.889 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.806 -20.919 -1.408 21.756 hybrid contribution 0.790 1.588 -0.091 1.776 sum -5.016 -19.331 -1.499 20.027 Atomic orbital electron populations 1.69646 1.05117 1.25743 1.57805 1.24740 0.95527 0.97695 1.03075 0.86264 0.78522 0.83541 0.77847 1.21279 1.21683 1.21278 1.19197 0.91000 0.84271 1.42672 0.91287 1.42338 1.05821 0.99991 1.89449 1.20635 0.92978 0.85181 0.97721 1.22776 0.99145 0.94304 0.97050 0.89436 1.23323 0.98929 0.96536 0.98795 1.22017 0.84048 0.96226 0.96802 0.88011 1.45586 1.23618 1.43395 1.22389 1.18166 0.83267 0.79078 0.84974 1.90781 1.71709 1.58100 1.20047 1.20420 0.95746 0.98150 0.95331 1.22415 0.98285 1.00217 0.95230 1.22804 0.90750 0.92727 0.99666 1.67576 1.32464 1.09935 1.08106 1.22837 0.94248 0.97863 0.91230 1.22343 0.94481 0.95580 1.01290 1.23421 1.02647 0.93804 0.97811 0.93488 0.78348 0.96181 0.96371 0.91188 0.88490 0.76225 0.84127 0.81921 0.81944 0.83383 0.88902 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.40 5.60 -59.91 -0.34 -18.74 16 10 C 0.16 3.16 6.10 -4.04 -0.02 3.13 16 11 C -0.11 -1.69 3.63 -89.81 -0.33 -2.02 16 12 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 13 C -0.14 -1.56 7.39 -25.91 -0.19 -1.75 16 14 C 0.11 1.38 4.32 -67.12 -0.29 1.09 16 15 H 0.10 1.30 7.47 -51.93 -0.39 0.91 16 16 N -0.70 -7.64 5.22 -53.86 -0.28 -7.93 16 17 C 0.56 6.93 7.80 -12.19 -0.10 6.83 16 18 O -0.53 -8.30 16.05 5.35 0.09 -8.22 16 19 C -0.09 -0.88 5.91 -104.65 -0.62 -1.49 16 20 C -0.14 -1.16 9.62 -39.02 -0.38 -1.54 16 21 C 0.10 0.80 11.17 -17.59 -0.20 0.61 16 22 N -0.47 -4.59 10.33 -13.30 -0.14 -4.73 16 23 C 0.09 0.81 11.17 -17.59 -0.20 0.61 16 24 C -0.12 -1.10 9.68 -39.02 -0.38 -1.47 16 25 C -0.14 -1.99 7.43 -25.92 -0.19 -2.18 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.38 10.11 7.67 -40.82 -0.31 9.80 16 28 H 0.02 0.40 7.84 -51.93 -0.41 -0.01 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 32 H 0.40 3.51 6.84 -40.82 -0.28 3.23 16 33 H 0.14 0.83 6.54 -52.49 -0.34 0.49 16 34 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.15 1.31 7.74 -52.49 -0.41 0.90 16 37 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 325.77 15.07 4.91 4.91 Total: -1.00 -33.90 325.77 -8.24 -42.14 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.05 Total: 8.30 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -3.13 Total: -5.59 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.03 Total: -58.94 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.90 -8.24 -42.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485672029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.023 kcal (2) G-P(sol) polarization free energy of solvation -33.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds