Wall clock time and date at job start Mon Mar 30 2020 01:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00320 * 2 1 4 4 H 1.48499 * 109.46957 * 240.00495 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47203 * 120.00199 * 3 2 1 7 7 C 1.38817 * 119.99605 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99479 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99886 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46810 * 179.97438 * 10 9 7 12 12 H 1.08998 * 112.85038 * 43.80987 * 11 10 9 13 13 C 1.53787 * 113.60890 * 175.00176 * 11 10 9 14 14 C 1.53784 * 87.07923 * 139.98364 * 13 11 10 15 15 H 1.09004 * 113.61162 * 220.01809 * 14 13 11 16 16 N 1.46499 * 113.61434 * 89.11404 * 14 13 11 17 17 C 1.34778 * 119.99940 * 155.00095 * 16 14 13 18 18 O 1.21516 * 119.99929 * 359.97438 * 17 16 14 19 19 C 1.48152 * 120.00073 * 179.97438 * 17 16 14 20 20 C 1.39817 * 120.91848 * 359.71864 * 19 17 16 21 21 C 1.38154 * 118.99627 * 179.75391 * 20 19 17 22 22 N 1.31810 * 120.89616 * 0.53436 * 21 20 19 23 23 C 1.31815 * 122.05087 * 359.73739 * 22 21 20 24 24 C 1.38148 * 120.89567 * 359.97438 * 23 22 21 25 25 C 1.53779 * 87.08045 * 334.56667 * 14 13 11 26 26 H 0.97001 * 120.00068 * 359.97438 * 1 2 3 27 27 H 0.96999 * 120.00230 * 0.02562 * 9 7 2 28 28 H 1.09003 * 109.46643 * 60.00071 * 10 9 7 29 29 H 1.08993 * 109.47454 * 300.00167 * 10 9 7 30 30 H 1.09004 * 113.61202 * 254.53117 * 13 11 10 31 31 H 1.08994 * 113.61447 * 25.43549 * 13 11 10 32 32 H 0.97000 * 120.00274 * 334.99936 * 16 14 13 33 33 H 1.07997 * 120.50369 * 359.97438 * 20 19 17 34 34 H 1.08000 * 119.55445 * 180.27371 * 21 20 19 35 35 H 1.08001 * 119.55459 * 180.02562 * 23 22 21 36 36 H 1.07998 * 120.50425 * 180.02562 * 24 23 22 37 37 H 1.09006 * 113.61307 * 270.88660 * 25 14 13 38 38 H 1.08999 * 113.69146 * 139.99146 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0636 -4.8197 0.0001 12 1 0.2373 -4.6705 -0.6950 13 6 1.7302 -6.2002 -0.1226 14 6 0.7049 -6.6997 0.9090 15 1 1.1237 -7.3889 1.6423 16 7 -0.5387 -7.1905 0.3101 17 6 -1.2954 -8.0897 0.9700 18 8 -0.9459 -8.4935 2.0615 19 6 -2.5534 -8.5857 0.3647 20 6 -2.9767 -8.1297 -0.8874 21 6 -4.1537 -8.6227 -1.4169 22 7 -4.8782 -9.5019 -0.7538 23 6 -4.5183 -9.9535 0.4311 24 6 -3.3530 -9.5184 1.0322 25 6 0.6171 -5.2478 1.4080 26 1 -0.4850 0.8400 0.0004 27 1 0.3555 -2.3880 -0.0005 28 1 2.6846 -3.7146 0.8895 29 1 2.6846 -3.7147 -0.8904 30 1 1.6159 -6.6542 -1.1070 31 1 2.7585 -6.2220 0.2380 32 1 -0.8176 -6.8685 -0.5613 33 1 -2.3907 -7.4057 -1.4340 34 1 -4.4869 -8.2800 -2.3853 35 1 -5.1424 -10.6742 0.9386 36 1 -3.0639 -9.8930 2.0030 37 1 1.3413 -5.0093 2.1871 38 1 -0.3952 -4.9317 1.6599 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485672029.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:12 Heat of formation + Delta-G solvation = 9.321099 kcal Electronic energy + Delta-G solvation = -20049.232268 eV Core-core repulsion = 16891.622349 eV Total energy + Delta-G solvation = -3157.609919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.79160 -40.69092 -39.33176 -36.36606 -34.82475 -33.53872 -32.69525 -32.13655 -28.60019 -26.64825 -26.17422 -25.02487 -24.40299 -22.97194 -22.11022 -20.39206 -19.30560 -19.07001 -17.66258 -16.89413 -16.70868 -16.54873 -16.44479 -16.24938 -15.63461 -15.62995 -15.11210 -14.87665 -14.78243 -14.53598 -14.40352 -13.71741 -13.40902 -13.12901 -12.91869 -12.71319 -12.67004 -12.23418 -11.92994 -11.79518 -11.42351 -11.37143 -11.16549 -11.02147 -10.85741 -10.55018 -10.21109 -10.14313 -8.97621 -7.94951 -5.23051 -0.37954 0.08357 1.47075 1.49986 1.56109 1.73591 1.91155 2.56343 2.82715 3.37931 3.41963 3.49670 3.56096 3.58948 3.80163 3.91228 3.92893 3.93917 4.05755 4.33008 4.51928 4.53918 4.71515 4.79157 4.80231 4.84174 4.86775 4.90927 4.98225 5.02116 5.13895 5.24858 5.32756 5.48735 5.59099 5.63370 6.27853 6.35973 6.88629 7.00248 7.33967 8.12186 8.34272 9.28430 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026207 B = 0.003132 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.163556 B = 8938.900591 C = 9564.407646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.746 5.746 10 C 0.159 3.841 11 C -0.112 4.112 12 H 0.088 0.912 13 C -0.115 4.115 14 C 0.124 3.876 15 H 0.098 0.902 16 N -0.690 5.690 17 C 0.558 3.442 18 O -0.570 6.570 19 C -0.103 4.103 20 C -0.135 4.135 21 C 0.094 3.906 22 N -0.491 5.491 23 C 0.094 3.906 24 C -0.125 4.125 25 C -0.143 4.143 26 H 0.251 0.749 27 H 0.373 0.627 28 H 0.020 0.980 29 H 0.023 0.977 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.414 0.586 33 H 0.164 0.836 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.147 0.853 37 H 0.087 0.913 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.948 -21.197 -3.017 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.202 1.202 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.033 3.967 11 C -0.131 4.131 12 H 0.106 0.894 13 C -0.153 4.153 14 C 0.019 3.981 15 H 0.116 0.884 16 N -0.341 5.341 17 C 0.346 3.654 18 O -0.449 6.449 19 C -0.114 4.114 20 C -0.156 4.156 21 C -0.063 4.063 22 N -0.200 5.200 23 C -0.062 4.062 24 C -0.146 4.146 25 C -0.182 4.182 26 H 0.060 0.940 27 H 0.205 0.795 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.252 0.748 33 H 0.182 0.818 34 H 0.207 0.793 35 H 0.205 0.795 36 H 0.165 0.835 37 H 0.105 0.895 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.274 -21.675 -2.622 22.461 hybrid contribution 0.636 1.772 0.280 1.904 sum -4.638 -19.903 -2.342 20.570 Atomic orbital electron populations 1.69803 1.06588 1.26102 1.59562 1.25564 0.96408 1.01104 1.03792 0.85223 0.77222 0.79197 0.78203 1.20236 1.22168 1.20544 1.19624 0.91508 0.85565 1.41181 0.90749 1.42577 1.05604 1.01279 1.89342 1.20832 0.93785 0.84516 0.97539 1.22710 0.98630 0.94373 0.97367 0.89390 1.23237 0.98941 0.93288 0.99851 1.21844 0.84719 0.94547 0.97035 0.88366 1.45509 1.23087 1.42797 1.22706 1.18510 0.83734 0.78692 0.84463 1.90757 1.72774 1.59584 1.21798 1.20392 0.95265 0.99278 0.96506 1.22646 0.98421 1.00111 0.94372 1.23293 0.90426 0.92061 1.00508 1.67638 1.33133 1.10628 1.08649 1.23215 0.94058 0.97923 0.90984 1.22455 0.94932 0.95744 1.01466 1.23432 1.01408 0.95801 0.97574 0.94042 0.79529 0.96242 0.95932 0.88724 0.87336 0.74758 0.81816 0.79277 0.79477 0.83475 0.89494 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 3 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.25 -13.80 9.99 84.04 0.84 -12.96 16 8 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.75 -37.50 5.60 -343.44 -1.92 -39.42 16 10 C 0.16 6.05 6.10 86.38 0.53 6.58 16 11 C -0.11 -3.18 3.63 -10.27 -0.04 -3.21 16 12 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 13 C -0.11 -2.30 7.39 31.12 0.23 -2.07 16 14 C 0.12 2.82 4.32 45.52 0.20 3.02 16 15 H 0.10 2.40 7.47 -2.39 -0.02 2.38 16 16 N -0.69 -14.08 5.22 -442.61 -2.31 -16.39 16 17 C 0.56 13.51 7.80 86.88 0.68 14.19 16 18 O -0.57 -17.98 16.05 -3.77 -0.06 -18.04 16 19 C -0.10 -2.03 5.91 -19.88 -0.12 -2.15 16 20 C -0.14 -1.97 9.62 22.63 0.22 -1.75 16 21 C 0.09 1.35 11.17 84.68 0.95 2.29 16 22 N -0.49 -8.75 10.33 -196.00 -2.03 -10.78 16 23 C 0.09 1.49 11.17 84.67 0.95 2.44 16 24 C -0.13 -2.30 9.68 22.63 0.22 -2.08 16 25 C -0.14 -4.08 7.43 31.12 0.23 -3.84 16 26 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.37 19.95 7.67 -92.71 -0.71 19.24 16 28 H 0.02 0.75 7.84 -2.39 -0.02 0.73 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.11 2.00 8.10 -2.39 -0.02 1.98 16 32 H 0.41 6.29 6.84 -92.71 -0.63 5.65 16 33 H 0.16 1.48 6.54 -2.91 -0.02 1.46 16 34 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.15 2.63 7.74 -2.91 -0.02 2.61 16 37 H 0.09 2.56 7.90 -2.38 -0.02 2.54 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -73.02 325.77 1.07 -71.95 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.26 Total: 27.15 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 5.34 Total: -3.48 kcal Atomic # 7 Polarization: -119.67 SS G_CDS: -5.98 Total: -125.65 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.06 Total: -18.04 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -73.02 1.07 -71.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485672029.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.272 kcal (2) G-P(sol) polarization free energy of solvation -73.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds