Wall clock time and date at job start Mon Mar 30 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86808 * 119.99916 * 2 1 4 4 H 1.48496 * 109.46897 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47144 * 120.00108 * 3 2 1 6 6 H 1.48504 * 109.47051 * 240.00332 * 3 2 1 7 7 C 1.38815 * 120.00559 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00247 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99510 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00062 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47274 * 175.01461 * 10 9 7 12 12 H 1.09000 * 109.87246 * 306.79309 * 11 10 9 13 13 C 1.54314 * 109.88275 * 67.97458 * 11 10 9 14 14 C 1.55156 * 102.94510 * 141.60968 * 13 11 10 15 15 C 1.54907 * 101.58055 * 324.49637 * 14 13 11 16 16 N 1.47022 * 109.88103 * 185.78203 * 11 10 9 17 17 C 1.34777 * 125.65098 * 61.60356 * 16 11 10 18 18 O 1.21519 * 120.00131 * 5.33594 * 17 16 11 19 19 C 1.48173 * 120.00168 * 185.32845 * 17 16 11 20 20 C 1.39308 * 119.71983 * 179.72428 * 19 17 16 21 21 C 1.38594 * 119.05291 * 179.77435 * 20 19 17 22 22 C 1.38625 * 118.48922 * 0.49981 * 21 20 19 23 23 C 1.38554 * 119.35131 * 359.74579 * 22 21 20 24 24 N 1.31520 * 120.90438 * 0.02562 * 23 22 21 25 25 H 0.97002 * 119.99942 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00115 * 0.02562 * 9 7 2 27 27 H 1.09005 * 109.47117 * 295.01522 * 10 9 7 28 28 H 1.09000 * 109.47189 * 55.01267 * 10 9 7 29 29 H 1.09003 * 110.72218 * 259.97217 * 13 11 10 30 30 H 1.09003 * 110.72579 * 23.24247 * 13 11 10 31 31 H 1.08997 * 111.00691 * 206.41849 * 14 13 11 32 32 H 1.09001 * 111.00401 * 82.57062 * 14 13 11 33 33 H 1.08996 * 110.36786 * 278.16606 * 15 14 13 34 34 H 1.09004 * 110.46195 * 155.89072 * 15 14 13 35 35 H 1.07991 * 120.47680 * 0.02562 * 20 19 17 36 36 H 1.08005 * 120.75503 * 180.24363 * 21 20 19 37 37 H 1.07999 * 120.32301 * 179.76851 * 22 21 20 38 38 H 1.08010 * 119.54464 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0687 -4.8170 0.1239 12 1 0.4256 -4.6633 0.9904 13 6 0.2140 -4.9189 -1.1568 14 6 0.0779 -6.4506 -1.3629 15 6 1.4608 -6.9537 -0.8791 16 7 1.8000 -6.0849 0.2627 17 6 2.6418 -6.4003 1.2668 18 8 2.7746 -5.6440 2.2087 19 6 3.4053 -7.6695 1.2225 20 6 4.2781 -7.9870 2.2608 21 6 4.9817 -9.1799 2.2076 22 6 4.7957 -10.0090 1.1122 23 6 3.9150 -9.6269 0.1131 24 7 3.2564 -8.4912 0.1911 25 1 -0.4850 -0.8401 0.0004 26 1 0.3557 -2.3881 -0.0005 27 1 2.6154 -3.7537 -0.9335 28 1 2.7508 -3.6771 0.8397 29 1 -0.7638 -4.4617 -1.0053 30 1 0.7285 -4.4604 -2.0014 31 1 -0.0794 -6.6910 -2.4143 32 1 -0.7236 -6.8580 -0.7466 33 1 2.2019 -6.8461 -1.6710 34 1 1.3973 -7.9936 -0.5586 35 1 4.4016 -7.3153 3.0973 36 1 5.6626 -9.4553 2.9994 37 1 5.3317 -10.9436 1.0386 38 1 3.7674 -10.2707 -0.7415 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495540140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:35 Heat of formation + Delta-G solvation = 27.926808 kcal Electronic energy + Delta-G solvation = -20994.454017 eV Core-core repulsion = 17837.650903 eV Total energy + Delta-G solvation = -3156.803115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83130 -39.38036 -37.32584 -34.74109 -33.07817 -31.90467 -31.29663 -31.04595 -28.43245 -25.36804 -24.46924 -23.74904 -22.82594 -22.09554 -20.91417 -19.38742 -17.61977 -17.10950 -16.93062 -16.26328 -16.08083 -15.37418 -14.85828 -14.68991 -14.18778 -13.72567 -13.61151 -13.54301 -13.37526 -13.24210 -12.87261 -12.56951 -12.34774 -12.01084 -11.63536 -11.10836 -10.72826 -10.57318 -10.51716 -10.40833 -10.23683 -10.10746 -9.92394 -9.50503 -9.45964 -9.13744 -8.79415 -8.38937 -6.91992 -6.02819 -3.01410 0.44556 0.93152 2.73487 2.98350 3.57416 3.61974 3.70736 3.78866 3.92235 4.46026 4.50397 4.69264 4.72783 4.76866 4.80322 4.91171 5.08708 5.15610 5.44039 5.48050 5.56928 5.68370 5.69782 5.78605 5.81853 5.91175 5.94497 6.04316 6.12758 6.15991 6.28149 6.41600 6.53220 6.80811 6.95103 7.45768 7.67111 7.89609 8.24942 8.83563 9.30921 10.17019 10.32342 11.46079 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025987 B = 0.004167 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.194151 B = 6717.247292 C = 7462.982539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.046 4.046 3 Si 1.081 2.919 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.326 4.326 8 H 0.063 0.937 9 N -0.739 5.739 10 C 0.153 3.847 11 C 0.128 3.872 12 H 0.077 0.923 13 C -0.122 4.122 14 C -0.139 4.139 15 C 0.112 3.888 16 N -0.591 5.591 17 C 0.577 3.423 18 O -0.524 6.524 19 C 0.090 3.910 20 C -0.113 4.113 21 C -0.082 4.082 22 C -0.156 4.156 23 C 0.093 3.907 24 N -0.454 5.454 25 H 0.254 0.746 26 H 0.366 0.634 27 H 0.016 0.984 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.411 -24.313 -0.981 25.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.243 4.243 3 Si 0.912 3.088 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.223 1.223 7 C -0.457 4.457 8 H 0.081 0.919 9 N -0.385 5.385 10 C 0.024 3.976 11 C 0.025 3.975 12 H 0.095 0.905 13 C -0.160 4.160 14 C -0.177 4.177 15 C -0.011 4.011 16 N -0.324 5.324 17 C 0.363 3.637 18 O -0.399 6.399 19 C -0.049 4.049 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.176 4.176 23 C -0.066 4.066 24 N -0.166 5.166 25 H 0.065 0.935 26 H 0.200 0.800 27 H 0.034 0.966 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.167 0.833 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.029 -21.976 -1.065 22.813 hybrid contribution 0.647 -2.054 0.623 2.242 sum 6.676 -24.030 -0.442 24.944 Atomic orbital electron populations 1.70879 1.05977 1.28283 1.54029 1.25767 0.97077 1.00886 1.00601 0.83230 0.74183 0.75549 0.75853 1.21026 1.22287 1.22318 1.20030 0.92030 0.85700 1.47968 0.91870 1.42201 1.04760 1.00669 1.90848 1.20870 0.93526 0.84696 0.98463 1.21898 0.93674 0.83469 0.98490 0.90466 1.22678 1.00436 0.95589 0.97313 1.22889 0.96990 0.96163 1.01693 1.22496 0.95321 0.95241 0.88034 1.48299 1.43461 1.17269 1.23324 1.17524 0.79410 0.84769 0.82003 1.90844 1.65285 1.50673 1.33108 1.21219 0.96942 0.94848 0.91856 1.22173 0.94669 0.97217 0.99269 1.21641 0.97811 0.93245 0.98066 1.22362 0.99285 1.00920 0.94998 1.22877 0.92454 0.93028 0.98272 1.67857 1.21919 1.03720 1.23104 0.93504 0.80038 0.96586 0.94621 0.90015 0.89968 0.90009 0.91008 0.91461 0.88783 0.83319 0.84093 0.84364 0.82095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -30.20 13.70 55.49 0.76 -29.44 16 2 C -0.05 -1.40 5.50 -17.43 -0.10 -1.50 16 3 Si 1.08 27.08 29.92 -169.99 -5.09 21.99 16 4 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.30 -7.05 7.11 56.52 0.40 -6.64 16 7 C -0.33 -9.84 9.99 -15.06 -0.15 -9.99 16 8 H 0.06 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.74 -20.03 5.46 -59.91 -0.33 -20.36 16 10 C 0.15 3.54 5.67 -4.04 -0.02 3.52 16 11 C 0.13 2.38 2.91 -66.96 -0.19 2.19 16 12 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 13 C -0.12 -1.89 6.13 -24.90 -0.15 -2.04 16 14 C -0.14 -1.64 7.08 -24.58 -0.17 -1.82 16 15 C 0.11 1.44 5.73 -2.53 -0.01 1.43 16 16 N -0.59 -9.83 3.07 -164.00 -0.50 -10.33 16 17 C 0.58 10.14 7.55 -12.18 -0.09 10.05 16 18 O -0.52 -11.05 15.51 5.35 0.08 -10.97 16 19 C 0.09 1.24 6.72 -83.01 -0.56 0.69 16 20 C -0.11 -1.30 9.63 -39.05 -0.38 -1.68 16 21 C -0.08 -0.66 10.17 -39.31 -0.40 -1.06 16 22 C -0.16 -1.08 10.11 -39.32 -0.40 -1.47 16 23 C 0.09 0.77 11.18 -17.57 -0.20 0.57 16 24 N -0.45 -5.34 6.74 -9.80 -0.07 -5.40 16 25 H 0.25 7.95 6.77 -40.82 -0.28 7.68 16 26 H 0.37 9.89 6.32 -40.82 -0.26 9.63 16 27 H 0.02 0.38 8.00 -51.93 -0.42 -0.03 16 28 H 0.04 0.92 6.87 -51.93 -0.36 0.57 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.35 7.75 -51.93 -0.40 0.95 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.11 6.26 -51.93 -0.32 0.79 16 35 H 0.15 1.74 7.64 -52.49 -0.40 1.34 16 36 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.16 0.82 8.06 -52.48 -0.42 0.39 16 LS Contribution 316.42 15.07 4.77 4.77 Total: -1.00 -36.43 316.42 -8.22 -44.65 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.02 Total: 6.20 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.83 Total: -1.11 kcal Atomic # 7 Polarization: -65.39 SS G_CDS: -0.14 Total: -65.53 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 27.08 SS G_CDS: -5.09 Total: 21.99 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.43 -8.22 -44.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495540140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.579 kcal (2) G-P(sol) polarization free energy of solvation -36.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds