Wall clock time and date at job start Mon Mar 30 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86808 * 119.99916 * 2 1 4 4 H 1.48496 * 109.46897 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47144 * 120.00108 * 3 2 1 6 6 H 1.48504 * 109.47051 * 240.00332 * 3 2 1 7 7 C 1.38815 * 120.00559 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00247 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99510 * 359.97438 * 7 2 1 10 10 C 1.46494 * 120.00062 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47274 * 175.01461 * 10 9 7 12 12 H 1.09000 * 109.87246 * 306.79309 * 11 10 9 13 13 C 1.54314 * 109.88275 * 67.97458 * 11 10 9 14 14 C 1.55156 * 102.94510 * 141.60968 * 13 11 10 15 15 C 1.54907 * 101.58055 * 324.49637 * 14 13 11 16 16 N 1.47022 * 109.88103 * 185.78203 * 11 10 9 17 17 C 1.34777 * 125.65098 * 61.60356 * 16 11 10 18 18 O 1.21519 * 120.00131 * 5.33594 * 17 16 11 19 19 C 1.48173 * 120.00168 * 185.32845 * 17 16 11 20 20 C 1.39308 * 119.71983 * 179.72428 * 19 17 16 21 21 C 1.38594 * 119.05291 * 179.77435 * 20 19 17 22 22 C 1.38625 * 118.48922 * 0.49981 * 21 20 19 23 23 C 1.38554 * 119.35131 * 359.74579 * 22 21 20 24 24 N 1.31520 * 120.90438 * 0.02562 * 23 22 21 25 25 H 0.97002 * 119.99942 * 180.02562 * 1 2 3 26 26 H 0.97000 * 120.00115 * 0.02562 * 9 7 2 27 27 H 1.09005 * 109.47117 * 295.01522 * 10 9 7 28 28 H 1.09000 * 109.47189 * 55.01267 * 10 9 7 29 29 H 1.09003 * 110.72218 * 259.97217 * 13 11 10 30 30 H 1.09003 * 110.72579 * 23.24247 * 13 11 10 31 31 H 1.08997 * 111.00691 * 206.41849 * 14 13 11 32 32 H 1.09001 * 111.00401 * 82.57062 * 14 13 11 33 33 H 1.08996 * 110.36786 * 278.16606 * 15 14 13 34 34 H 1.09004 * 110.46195 * 155.89072 * 15 14 13 35 35 H 1.07991 * 120.47680 * 0.02562 * 20 19 17 36 36 H 1.08005 * 120.75503 * 180.24363 * 21 20 19 37 37 H 1.07999 * 120.32301 * 179.76851 * 22 21 20 38 38 H 1.08010 * 119.54464 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0687 -4.8170 0.1239 12 1 0.4256 -4.6633 0.9904 13 6 0.2140 -4.9189 -1.1568 14 6 0.0779 -6.4506 -1.3629 15 6 1.4608 -6.9537 -0.8791 16 7 1.8000 -6.0849 0.2627 17 6 2.6418 -6.4003 1.2668 18 8 2.7746 -5.6440 2.2087 19 6 3.4053 -7.6695 1.2225 20 6 4.2781 -7.9870 2.2608 21 6 4.9817 -9.1799 2.2076 22 6 4.7957 -10.0090 1.1122 23 6 3.9150 -9.6269 0.1131 24 7 3.2564 -8.4912 0.1911 25 1 -0.4850 -0.8401 0.0004 26 1 0.3557 -2.3881 -0.0005 27 1 2.6154 -3.7537 -0.9335 28 1 2.7508 -3.6771 0.8397 29 1 -0.7638 -4.4617 -1.0053 30 1 0.7285 -4.4604 -2.0014 31 1 -0.0794 -6.6910 -2.4143 32 1 -0.7236 -6.8580 -0.7466 33 1 2.2019 -6.8461 -1.6710 34 1 1.3973 -7.9936 -0.5586 35 1 4.4016 -7.3153 3.0973 36 1 5.6626 -9.4553 2.9994 37 1 5.3317 -10.9436 1.0386 38 1 3.7674 -10.2707 -0.7415 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495540140.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:35 Heat of formation + Delta-G solvation = 2.400304 kcal Electronic energy + Delta-G solvation = -20995.560930 eV Core-core repulsion = 17837.650903 eV Total energy + Delta-G solvation = -3157.910027 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.86566 -40.46925 -38.71664 -36.80881 -34.05492 -33.35158 -32.74489 -32.04380 -30.15072 -26.65830 -26.12193 -24.69078 -24.44044 -23.42866 -22.08803 -20.73946 -19.50326 -18.51132 -18.01893 -17.53637 -16.85815 -16.74898 -16.25378 -15.87764 -15.72185 -15.41927 -15.12821 -15.08510 -14.54853 -14.25438 -14.06236 -13.87254 -13.73561 -13.21966 -12.89697 -12.77210 -12.62950 -12.14474 -11.98614 -11.89317 -11.73566 -11.44111 -11.35723 -11.00561 -10.95710 -10.39689 -10.27184 -9.75941 -9.21933 -8.48330 -5.42424 -0.39967 0.24694 1.54212 1.60151 1.65545 1.75996 1.83044 2.66786 2.83281 2.98953 3.31920 3.52783 3.56846 3.72813 3.81589 3.91520 3.95610 4.03553 4.07564 4.19146 4.23286 4.41138 4.48236 4.67722 4.75241 4.79587 4.89495 4.93656 5.01163 5.05267 5.06014 5.15120 5.27236 5.34318 5.48542 5.65312 6.36342 6.42467 6.67143 6.96829 7.01614 7.88503 8.01502 9.03722 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.025987 B = 0.004167 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.194151 B = 6717.247292 C = 7462.982539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.097 4.097 3 Si 1.131 2.869 4 H -0.285 1.285 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.345 4.345 8 H 0.057 0.943 9 N -0.747 5.747 10 C 0.162 3.838 11 C 0.133 3.867 12 H 0.053 0.947 13 C -0.118 4.118 14 C -0.122 4.122 15 C 0.113 3.887 16 N -0.594 5.594 17 C 0.565 3.435 18 O -0.579 6.579 19 C 0.057 3.943 20 C -0.127 4.127 21 C -0.078 4.078 22 C -0.131 4.131 23 C 0.090 3.910 24 N -0.468 5.468 25 H 0.245 0.755 26 H 0.365 0.635 27 H 0.015 0.985 28 H 0.002 0.998 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.132 0.868 36 H 0.174 0.826 37 H 0.184 0.816 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 -27.311 -2.377 28.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.288 4.288 3 Si 0.955 3.045 4 H -0.210 1.210 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.476 4.476 8 H 0.075 0.925 9 N -0.392 5.392 10 C 0.034 3.966 11 C 0.029 3.971 12 H 0.072 0.928 13 C -0.156 4.156 14 C -0.160 4.160 15 C -0.008 4.008 16 N -0.325 5.325 17 C 0.354 3.646 18 O -0.458 6.458 19 C -0.079 4.079 20 C -0.149 4.149 21 C -0.103 4.103 22 C -0.151 4.151 23 C -0.070 4.070 24 N -0.180 5.180 25 H 0.055 0.945 26 H 0.198 0.802 27 H 0.033 0.967 28 H 0.020 0.980 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.191 0.809 37 H 0.202 0.798 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 7.187 -25.035 -2.487 26.164 hybrid contribution 0.377 -1.289 1.067 1.715 sum 7.564 -26.323 -1.420 27.425 Atomic orbital electron populations 1.70985 1.06918 1.27909 1.55611 1.27343 0.97167 1.04535 0.99764 0.82612 0.73446 0.71337 0.77151 1.21015 1.20817 1.19982 1.20348 0.92128 0.87157 1.47952 0.92454 1.42303 1.04802 1.01351 1.90758 1.20814 0.93937 0.85226 0.96633 1.21656 0.92716 0.83231 0.99479 0.92840 1.22610 0.99381 0.98833 0.94782 1.22911 0.96602 0.92501 1.03975 1.22718 0.95982 0.95418 0.86722 1.48459 1.43021 1.16767 1.24244 1.18344 0.79156 0.85873 0.81226 1.90787 1.67038 1.52841 1.35174 1.20682 0.98740 0.94347 0.94180 1.22218 0.95380 0.98797 0.98476 1.22036 0.97213 0.91604 0.99488 1.22894 0.97499 1.01617 0.93080 1.23624 0.91657 0.91945 0.99744 1.67732 1.23161 1.04804 1.22339 0.94493 0.80240 0.96731 0.98001 0.89923 0.90946 0.86689 0.89822 0.91051 0.87070 0.84991 0.80879 0.79846 0.78315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.95 13.70 21.65 0.30 -62.65 16 2 C -0.10 -5.96 5.50 84.86 0.47 -5.49 16 3 Si 1.13 54.80 29.92 68.60 2.05 56.85 16 4 H -0.28 -13.71 7.11 99.48 0.71 -13.01 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.34 -21.47 9.99 84.03 0.84 -20.63 16 8 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 9 N -0.75 -42.51 5.46 -343.46 -1.88 -44.38 16 10 C 0.16 8.00 5.67 86.38 0.49 8.49 16 11 C 0.13 5.27 2.91 45.34 0.13 5.40 16 12 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 13 C -0.12 -3.67 6.13 31.78 0.19 -3.47 16 14 C -0.12 -2.63 7.08 31.98 0.23 -2.40 16 15 C 0.11 2.77 5.73 86.85 0.50 3.27 16 16 N -0.59 -20.54 3.07 -791.07 -2.42 -22.97 16 17 C 0.57 21.24 7.55 86.88 0.66 21.89 16 18 O -0.58 -26.83 15.51 -3.77 -0.06 -26.89 16 19 C 0.06 1.60 6.72 41.91 0.28 1.88 16 20 C -0.13 -2.98 9.63 22.61 0.22 -2.76 16 21 C -0.08 -1.04 10.17 22.45 0.23 -0.81 16 22 C -0.13 -1.19 10.11 22.44 0.23 -0.96 16 23 C 0.09 1.13 11.18 84.81 0.95 2.08 16 24 N -0.47 -10.19 6.74 -184.91 -1.25 -11.44 16 25 H 0.24 15.85 6.77 -92.71 -0.63 15.22 16 26 H 0.36 20.72 6.32 -92.71 -0.59 20.13 16 27 H 0.01 0.73 8.00 -2.38 -0.02 0.71 16 28 H 0.00 0.11 6.87 -2.39 -0.02 0.09 16 29 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.07 2.40 7.75 -2.39 -0.02 2.38 16 31 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.11 2.40 6.26 -2.38 -0.01 2.39 16 35 H 0.13 3.40 7.64 -2.92 -0.02 3.38 16 36 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 38 H 0.20 0.91 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -84.73 316.42 2.78 -81.95 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.63 Total: 23.04 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 5.41 Total: 6.48 kcal Atomic # 7 Polarization: -136.19 SS G_CDS: -5.25 Total: -141.44 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.06 Total: -26.89 kcal Atomic # 14 Polarization: 54.80 SS G_CDS: 2.05 Total: 56.85 kcal Total: -84.73 2.78 -81.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495540140.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.354 kcal (2) G-P(sol) polarization free energy of solvation -84.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds