Wall clock time and date at job start Mon Mar 30 2020 01:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99618 * 2 1 4 4 H 1.48497 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47143 * 299.99895 * 3 2 1 6 6 H 1.48500 * 109.47366 * 59.99929 * 3 2 1 7 7 C 1.38808 * 120.00614 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00275 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99716 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.53784 * 113.61694 * 175.00106 * 11 10 9 13 13 C 1.53776 * 87.08118 * 139.98320 * 12 11 10 14 14 N 1.46492 * 113.61481 * 89.11813 * 13 12 11 15 15 C 1.34781 * 119.99838 * 156.52786 * 14 13 12 16 16 O 1.21514 * 120.00459 * 0.02562 * 15 14 13 17 17 C 1.48175 * 119.99986 * 179.97438 * 15 14 13 18 18 C 1.39302 * 119.72256 * 180.02562 * 17 15 14 19 19 C 1.38596 * 119.05902 * 179.97438 * 18 17 15 20 20 C 1.38630 * 118.48529 * 359.97438 * 19 18 17 21 21 C 1.38558 * 119.35539 * 0.28231 * 20 19 18 22 22 N 1.31533 * 120.89638 * 359.41561 * 21 20 19 23 23 C 1.53785 * 87.17635 * 334.52548 * 13 12 11 24 24 H 0.96996 * 120.00444 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99936 * 0.02562 * 9 7 2 26 26 H 1.08995 * 109.47421 * 60.00611 * 10 9 7 27 27 H 1.08998 * 109.47611 * 299.99904 * 10 9 7 28 28 H 1.09001 * 112.84603 * 43.80507 * 11 10 9 29 29 H 1.09007 * 113.61159 * 25.43265 * 12 11 10 30 30 H 1.08994 * 113.69039 * 254.54642 * 12 11 10 31 31 H 1.09007 * 113.61490 * 219.93867 * 13 12 11 32 32 H 0.97001 * 120.00364 * 336.52506 * 14 13 12 33 33 H 1.08000 * 120.47545 * 359.94755 * 18 17 15 34 34 H 1.07991 * 120.75611 * 180.02562 * 19 18 17 35 35 H 1.08002 * 120.31909 * 179.97438 * 20 19 18 36 36 H 1.07994 * 119.54941 * 179.70362 * 21 20 19 37 37 H 1.08997 * 113.61607 * 140.02247 * 23 13 12 38 38 H 1.09001 * 113.61740 * 270.92918 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 6 1.7308 -6.2000 -0.1240 13 6 0.7048 -6.7000 0.9065 14 7 -0.5383 -7.1907 0.3066 15 6 -1.3111 -8.0668 0.9788 16 8 -0.9770 -8.4493 2.0827 17 6 -2.5687 -8.5628 0.3722 18 6 -3.3633 -9.4677 1.0723 19 6 -4.5370 -9.9222 0.4921 20 6 -4.8756 -9.4551 -0.7684 21 6 -4.0348 -8.5593 -1.4092 22 7 -2.9294 -8.1399 -0.8330 23 6 0.6157 -5.2492 1.4087 24 1 -0.4850 0.8400 -0.0004 25 1 0.3557 -2.3881 -0.0005 26 1 2.6849 -3.7144 0.8894 27 1 2.6850 -3.7144 -0.8905 28 1 0.2383 -4.6701 -0.6968 29 1 2.7590 -6.2220 0.2373 30 1 1.6183 -6.6547 -1.1082 31 1 1.1227 -7.3907 1.6391 32 1 -0.8053 -6.8852 -0.5745 33 1 -3.0687 -9.8107 2.0531 34 1 -5.1738 -10.6236 1.0106 35 1 -5.7833 -9.7900 -1.2484 36 1 -4.2931 -8.1971 -2.3933 37 1 -0.3974 -4.9358 1.6606 38 1 1.3395 -5.0117 2.1883 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505476868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:01 Heat of formation + Delta-G solvation = 32.094536 kcal Electronic energy + Delta-G solvation = -20053.748839 eV Core-core repulsion = 16897.126450 eV Total energy + Delta-G solvation = -3156.622388 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86797 -39.66254 -38.08469 -34.53393 -33.46928 -32.55513 -31.66838 -30.72231 -26.92425 -25.45678 -25.00979 -23.82931 -23.20041 -21.48251 -21.08951 -19.02639 -18.32548 -17.09302 -16.88535 -16.25317 -15.73538 -15.29734 -15.18666 -14.77224 -14.40917 -14.10144 -13.80184 -13.70209 -13.44876 -13.25879 -12.72844 -12.33939 -12.29218 -12.08253 -11.59765 -11.00422 -10.81758 -10.54398 -10.33431 -10.33051 -10.28584 -10.03504 -9.83613 -9.75473 -9.57158 -9.54888 -8.95881 -8.80384 -6.85547 -5.71811 -2.99878 0.34992 0.86739 2.57355 2.97230 3.46129 3.51527 3.53949 3.61182 3.88290 4.45270 4.51249 4.61862 4.63516 4.71301 4.72702 4.87453 5.07529 5.16750 5.19437 5.37472 5.60180 5.62525 5.71821 5.79440 5.91934 5.98586 6.06767 6.16444 6.21717 6.29280 6.36205 6.47614 6.66457 6.83911 6.99242 7.29623 7.58653 7.74682 8.10456 8.47414 9.58334 10.18173 10.52559 11.51268 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.003153 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.001134 B = 8877.515648 C = 9486.163973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.163 3.837 11 C -0.114 4.114 12 C -0.137 4.137 13 C 0.113 3.887 14 N -0.687 5.687 15 C 0.572 3.428 16 O -0.536 6.536 17 C 0.081 3.919 18 C -0.113 4.113 19 C -0.083 4.083 20 C -0.152 4.152 21 C 0.099 3.901 22 N -0.457 5.457 23 C -0.138 4.138 24 H 0.254 0.746 25 H 0.383 0.617 26 H 0.020 0.980 27 H 0.018 0.982 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.412 0.588 33 H 0.149 0.851 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.068 0.932 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.366 -22.619 -1.811 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.132 4.132 12 C -0.175 4.175 13 C 0.008 3.992 14 N -0.337 5.337 15 C 0.356 3.644 16 O -0.412 6.412 17 C -0.057 4.057 18 C -0.134 4.134 19 C -0.109 4.109 20 C -0.172 4.172 21 C -0.060 4.060 22 N -0.169 5.169 23 C -0.177 4.177 24 H 0.064 0.936 25 H 0.217 0.783 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.249 0.751 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.181 0.819 37 H 0.087 0.913 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.384 -22.159 -1.428 23.401 hybrid contribution -0.710 0.595 -0.068 0.929 sum -8.094 -21.565 -1.496 23.082 Atomic orbital electron populations 1.69673 1.05097 1.25426 1.58094 1.24742 0.95524 0.97673 1.03256 0.86124 0.78775 0.84207 0.77149 1.20582 1.21913 1.21919 1.19295 0.91050 0.84274 1.42188 0.91190 1.42369 1.05879 1.00021 1.89356 1.20634 0.92995 0.85206 0.97650 1.22820 0.99148 0.94189 0.97077 1.23299 0.98758 0.96606 0.98887 1.22016 0.84309 0.96148 0.96751 1.45535 1.22540 1.44030 1.21579 1.17865 0.82667 0.79066 0.84766 1.90780 1.72212 1.58849 1.19364 1.21205 0.96066 0.96702 0.91764 1.22155 0.94040 0.95784 1.01387 1.21650 0.95882 0.98302 0.95029 1.22406 1.01007 0.97956 0.95877 1.22853 0.89478 0.93835 0.99881 1.67576 1.17036 1.22884 1.09413 1.23459 1.02531 0.93929 0.97734 0.93639 0.78313 0.96204 0.96391 0.89305 0.88597 0.91142 0.88224 0.75111 0.83374 0.84037 0.84170 0.81864 0.91286 0.89000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.05 5.60 -59.91 -0.34 -19.38 16 10 C 0.16 3.32 6.10 -4.04 -0.02 3.29 16 11 C -0.11 -1.84 3.65 -89.66 -0.33 -2.17 16 12 C -0.14 -1.75 7.38 -25.92 -0.19 -1.94 16 13 C 0.11 1.53 4.29 -67.12 -0.29 1.24 16 14 N -0.69 -9.12 5.25 -53.86 -0.28 -9.40 16 15 C 0.57 8.11 7.81 -12.18 -0.10 8.02 16 16 O -0.54 -8.90 15.94 5.35 0.09 -8.81 16 17 C 0.08 0.98 6.75 -83.01 -0.56 0.42 16 18 C -0.11 -1.11 9.63 -39.05 -0.38 -1.49 16 19 C -0.08 -0.58 10.17 -39.30 -0.40 -0.98 16 20 C -0.15 -0.97 10.11 -39.32 -0.40 -1.37 16 21 C 0.10 0.81 11.18 -17.56 -0.20 0.61 16 22 N -0.46 -5.13 9.54 -9.80 -0.09 -5.23 16 23 C -0.14 -2.16 7.45 -25.77 -0.19 -2.35 16 24 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.38 10.50 7.67 -40.82 -0.31 10.19 16 26 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.10 1.37 7.50 -51.93 -0.39 0.98 16 32 H 0.41 5.12 8.03 -40.82 -0.33 4.79 16 33 H 0.15 1.39 7.64 -52.49 -0.40 0.99 16 34 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.16 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.43 7.90 -51.93 -0.41 1.02 16 LS Contribution 327.87 15.07 4.94 4.94 Total: -1.00 -34.09 327.87 -8.45 -42.54 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.18 Total: 9.90 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.29 Total: -4.24 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.01 Total: -62.14 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.09 -8.45 -42.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505476868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.639 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds