Wall clock time and date at job start Mon Mar 30 2020 01:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99618 * 2 1 4 4 H 1.48497 * 109.46967 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47143 * 299.99895 * 3 2 1 6 6 H 1.48500 * 109.47366 * 59.99929 * 3 2 1 7 7 C 1.38808 * 120.00614 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00275 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99716 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47072 * 180.02562 * 10 9 7 12 12 C 1.53784 * 113.61694 * 175.00106 * 11 10 9 13 13 C 1.53776 * 87.08118 * 139.98320 * 12 11 10 14 14 N 1.46492 * 113.61481 * 89.11813 * 13 12 11 15 15 C 1.34781 * 119.99838 * 156.52786 * 14 13 12 16 16 O 1.21514 * 120.00459 * 0.02562 * 15 14 13 17 17 C 1.48175 * 119.99986 * 179.97438 * 15 14 13 18 18 C 1.39302 * 119.72256 * 180.02562 * 17 15 14 19 19 C 1.38596 * 119.05902 * 179.97438 * 18 17 15 20 20 C 1.38630 * 118.48529 * 359.97438 * 19 18 17 21 21 C 1.38558 * 119.35539 * 0.28231 * 20 19 18 22 22 N 1.31533 * 120.89638 * 359.41561 * 21 20 19 23 23 C 1.53785 * 87.17635 * 334.52548 * 13 12 11 24 24 H 0.96996 * 120.00444 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99936 * 0.02562 * 9 7 2 26 26 H 1.08995 * 109.47421 * 60.00611 * 10 9 7 27 27 H 1.08998 * 109.47611 * 299.99904 * 10 9 7 28 28 H 1.09001 * 112.84603 * 43.80507 * 11 10 9 29 29 H 1.09007 * 113.61159 * 25.43265 * 12 11 10 30 30 H 1.08994 * 113.69039 * 254.54642 * 12 11 10 31 31 H 1.09007 * 113.61490 * 219.93867 * 13 12 11 32 32 H 0.97001 * 120.00364 * 336.52506 * 14 13 12 33 33 H 1.08000 * 120.47545 * 359.94755 * 18 17 15 34 34 H 1.07991 * 120.75611 * 180.02562 * 19 18 17 35 35 H 1.08002 * 120.31909 * 179.97438 * 20 19 18 36 36 H 1.07994 * 119.54941 * 179.70362 * 21 20 19 37 37 H 1.08997 * 113.61607 * 140.02247 * 23 13 12 38 38 H 1.09001 * 113.61740 * 270.92918 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8914 2.3966 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 6 1.7308 -6.2000 -0.1240 13 6 0.7048 -6.7000 0.9065 14 7 -0.5383 -7.1907 0.3066 15 6 -1.3111 -8.0668 0.9788 16 8 -0.9770 -8.4493 2.0827 17 6 -2.5687 -8.5628 0.3722 18 6 -3.3633 -9.4677 1.0723 19 6 -4.5370 -9.9222 0.4921 20 6 -4.8756 -9.4551 -0.7684 21 6 -4.0348 -8.5593 -1.4092 22 7 -2.9294 -8.1399 -0.8330 23 6 0.6157 -5.2492 1.4087 24 1 -0.4850 0.8400 -0.0004 25 1 0.3557 -2.3881 -0.0005 26 1 2.6849 -3.7144 0.8894 27 1 2.6850 -3.7144 -0.8905 28 1 0.2383 -4.6701 -0.6968 29 1 2.7590 -6.2220 0.2373 30 1 1.6183 -6.6547 -1.1082 31 1 1.1227 -7.3907 1.6391 32 1 -0.8053 -6.8852 -0.5745 33 1 -3.0687 -9.8107 2.0531 34 1 -5.1738 -10.6236 1.0106 35 1 -5.7833 -9.7900 -1.2484 36 1 -4.2931 -8.1971 -2.3933 37 1 -0.3974 -4.9358 1.6606 38 1 1.3395 -5.0117 2.1883 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505476868.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:01 Heat of formation + Delta-G solvation = 8.065220 kcal Electronic energy + Delta-G solvation = -20054.790828 eV Core-core repulsion = 16897.126450 eV Total energy + Delta-G solvation = -3157.664378 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74780 -40.65322 -39.24112 -36.36117 -34.65464 -33.45477 -32.80889 -32.21639 -28.58857 -26.65697 -26.07326 -24.97641 -24.41050 -22.96455 -22.10382 -20.32697 -19.21787 -19.06270 -17.75836 -16.97459 -16.84317 -16.55136 -16.32616 -16.11711 -15.65185 -15.57424 -15.11375 -14.83486 -14.72098 -14.31624 -14.10297 -13.71440 -13.39347 -13.12710 -12.92677 -12.91057 -12.72627 -12.12684 -11.93906 -11.80229 -11.42208 -11.38117 -11.17271 -10.95856 -10.87630 -10.55588 -10.30931 -10.01869 -8.98216 -7.94995 -5.23715 -0.37530 0.25812 1.46688 1.47928 1.58122 1.64869 1.99309 2.56028 2.86295 3.10649 3.37875 3.55501 3.58621 3.79907 3.91464 3.93294 3.97978 4.05371 4.10318 4.32205 4.47410 4.55520 4.72446 4.77110 4.82991 4.86324 4.90449 4.96930 5.06355 5.13437 5.16286 5.25594 5.34052 5.49009 5.61582 5.65447 6.27682 6.34896 6.78163 7.06914 7.33247 8.11079 8.33502 9.29000 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.026309 B = 0.003153 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.001134 B = 8877.515648 C = 9486.163973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.747 5.747 10 C 0.161 3.839 11 C -0.112 4.112 12 C -0.114 4.114 13 C 0.121 3.879 14 N -0.684 5.684 15 C 0.567 3.433 16 O -0.570 6.570 17 C 0.048 3.952 18 C -0.123 4.123 19 C -0.079 4.079 20 C -0.134 4.134 21 C 0.087 3.913 22 N -0.482 5.482 23 C -0.141 4.141 24 H 0.251 0.749 25 H 0.372 0.628 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.080 0.920 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.101 0.899 32 H 0.416 0.584 33 H 0.144 0.856 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.190 0.810 37 H 0.047 0.953 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 -23.994 -2.810 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.389 5.389 10 C 0.035 3.965 11 C -0.131 4.131 12 C -0.152 4.152 13 C 0.016 3.984 14 N -0.334 5.334 15 C 0.353 3.647 16 O -0.449 6.449 17 C -0.089 4.089 18 C -0.144 4.144 19 C -0.105 4.105 20 C -0.154 4.154 21 C -0.073 4.073 22 N -0.194 5.194 23 C -0.180 4.180 24 H 0.059 0.941 25 H 0.203 0.797 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.098 0.902 29 H 0.131 0.869 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.254 0.746 33 H 0.162 0.838 34 H 0.194 0.806 35 H 0.198 0.802 36 H 0.206 0.794 37 H 0.066 0.934 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.722 -23.563 -2.442 24.916 hybrid contribution -0.676 0.945 0.207 1.180 sum -8.398 -22.617 -2.235 24.230 Atomic orbital electron populations 1.69835 1.06688 1.25962 1.59761 1.25606 0.96436 1.01234 1.03848 0.85047 0.78246 0.79651 0.76666 1.18933 1.21903 1.22106 1.19715 0.91551 0.85465 1.40854 0.90578 1.42616 1.05598 1.01373 1.89306 1.20820 0.93658 0.84374 0.97662 1.22727 0.98512 0.94546 0.97318 1.23220 0.99040 0.93296 0.99691 1.21893 0.84799 0.94677 0.97035 1.45537 1.22416 1.43805 1.21639 1.18323 0.83344 0.78594 0.84391 1.90740 1.73267 1.60130 1.20766 1.20968 0.96057 0.98849 0.92994 1.22287 0.95070 0.95656 1.01367 1.22075 0.94873 0.98161 0.95343 1.22867 1.01434 0.95903 0.95188 1.23443 0.88860 0.94094 1.00927 1.67497 1.18743 1.23847 1.09301 1.23468 1.01246 0.95774 0.97509 0.94058 0.79655 0.95867 0.95907 0.90165 0.86872 0.89258 0.88129 0.74642 0.83815 0.80648 0.80193 0.79364 0.93417 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.09 13.06 21.65 0.28 -60.81 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 3 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 7 C -0.24 -14.03 9.99 84.03 0.84 -13.19 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.75 -39.33 5.60 -343.47 -1.92 -41.25 16 10 C 0.16 6.52 6.10 86.38 0.53 7.04 16 11 C -0.11 -3.63 3.65 -10.17 -0.04 -3.66 16 12 C -0.11 -2.73 7.38 31.12 0.23 -2.50 16 13 C 0.12 3.26 4.29 45.52 0.20 3.46 16 14 N -0.68 -18.45 5.25 -442.59 -2.33 -20.78 16 15 C 0.57 16.63 7.81 86.88 0.68 17.31 16 16 O -0.57 -19.68 15.94 -3.76 -0.06 -19.74 16 17 C 0.05 1.18 6.75 41.91 0.28 1.46 16 18 C -0.12 -2.36 9.63 22.61 0.22 -2.14 16 19 C -0.08 -0.90 10.17 22.45 0.23 -0.67 16 20 C -0.13 -1.26 10.11 22.44 0.23 -1.03 16 21 C 0.09 1.23 11.18 84.81 0.95 2.18 16 22 N -0.48 -10.58 9.54 -184.91 -1.76 -12.35 16 23 C -0.14 -4.51 7.45 31.22 0.23 -4.28 16 24 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.37 20.97 7.67 -92.71 -0.71 20.26 16 26 H 0.02 0.94 7.85 -2.39 -0.02 0.92 16 27 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.11 2.38 8.10 -2.38 -0.02 2.36 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.10 2.75 7.50 -2.38 -0.02 2.73 16 32 H 0.42 10.45 8.03 -92.71 -0.74 9.71 16 33 H 0.14 2.76 7.64 -2.91 -0.02 2.74 16 34 H 0.18 0.74 8.06 -2.92 -0.02 0.72 16 35 H 0.18 0.25 8.06 -2.91 -0.02 0.23 16 36 H 0.19 1.54 8.06 -2.91 -0.02 1.51 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.09 2.90 7.90 -2.39 -0.02 2.88 16 Total: -1.00 -75.17 327.87 0.90 -74.27 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.37 Total: 31.74 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.04 Total: -0.24 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -5.73 Total: -135.19 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.06 Total: -19.74 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -75.17 0.90 -74.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505476868.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.339 kcal (2) G-P(sol) polarization free energy of solvation -75.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds