Wall clock time and date at job start Mon Mar 30 2020 02:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86796 * 119.99739 * 2 1 4 4 H 1.48499 * 109.46920 * 269.99401 * 3 2 1 5 5 H 1.48505 * 109.47421 * 29.99416 * 3 2 1 6 6 H 1.48501 * 109.47244 * 149.99458 * 3 2 1 7 7 C 1.40050 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00287 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99756 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00038 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00027 * 179.97438 * 9 7 2 12 12 C 1.46505 * 120.00038 * 180.02562 * 11 9 7 13 13 C 1.53119 * 109.51821 * 204.99998 * 12 11 9 14 14 C 1.53044 * 109.27589 * 182.37494 * 13 12 11 15 15 N 1.46847 * 109.51335 * 59.18419 * 14 13 12 16 16 C 1.39166 * 110.99934 * 174.15594 * 15 14 13 17 17 C 1.39471 * 120.86673 * 359.72086 * 16 15 14 18 18 C 1.37895 * 119.06650 * 179.72756 * 17 16 15 19 19 N 1.31994 * 120.84452 * 0.56183 * 18 17 16 20 20 C 1.31996 * 121.90969 * 359.71551 * 19 18 17 21 21 C 1.37894 * 120.84236 * 359.97438 * 20 19 18 22 22 C 1.46847 * 111.20163 * 298.24410 * 15 14 13 23 23 C 1.53041 * 109.51486 * 61.75514 * 22 15 14 24 24 H 0.96994 * 120.00234 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00390 * 0.02562 * 11 9 7 26 26 H 1.08993 * 109.52098 * 325.12265 * 12 11 9 27 27 H 1.09000 * 109.50507 * 62.44159 * 13 12 11 28 28 H 1.08999 * 109.54263 * 302.33092 * 13 12 11 29 29 H 1.09002 * 109.46396 * 179.19729 * 14 13 12 30 30 H 1.08994 * 109.46485 * 299.17654 * 14 13 12 31 31 H 1.08005 * 120.46924 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.58110 * 180.29583 * 18 17 16 33 33 H 1.07998 * 119.58327 * 180.02562 * 20 19 18 34 34 H 1.07994 * 120.46996 * 179.97438 * 21 20 19 35 35 H 1.09005 * 109.46836 * 301.74653 * 22 15 14 36 36 H 1.08995 * 109.45748 * 181.76188 * 22 15 14 37 37 H 1.08996 * 109.50341 * 180.87808 * 23 22 15 38 38 H 1.08996 * 109.50165 * 60.75338 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.4882 2.0463 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4403 0.7002 7 6 2.0071 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9491 -3.6476 0.0005 12 6 1.2166 -4.9164 0.0000 13 6 2.0934 -6.0136 0.6100 14 6 1.3460 -7.3479 0.5526 15 7 1.0265 -7.6714 -0.8437 16 6 0.4631 -8.9399 -0.9453 17 6 0.2718 -9.7307 0.1875 18 6 -0.2949 -10.9797 0.0446 19 7 -0.6439 -11.4325 -1.1451 20 6 -0.4740 -10.7170 -2.2413 21 6 0.0801 -9.4557 -2.1834 22 6 0.1465 -6.6560 -1.4362 23 6 0.8580 -5.3011 -1.4381 24 1 -0.4850 0.8400 -0.0004 25 1 2.9191 -3.6477 0.0009 26 1 0.3045 -4.8106 0.5871 27 1 2.3167 -5.7660 1.6477 28 1 3.0231 -6.0928 0.0465 29 1 1.9732 -8.1339 0.9732 30 1 0.4234 -7.2724 1.1281 31 1 0.5597 -9.3684 1.1633 32 1 -0.4512 -11.5971 0.9168 33 1 -0.7736 -11.1244 -3.1956 34 1 0.2167 -8.8757 -3.0841 35 1 -0.7704 -6.5838 -0.8510 36 1 -0.0973 -6.9396 -2.4599 37 1 0.1989 -4.5445 -1.8636 38 1 1.7680 -5.3688 -2.0343 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522811611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:31 Heat of formation + Delta-G solvation = 0.604045 kcal Electronic energy + Delta-G solvation = -20741.063460 eV Core-core repulsion = 17583.075541 eV Total energy + Delta-G solvation = -3157.987919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80714 -38.83100 -37.11956 -34.50525 -32.50863 -31.80384 -31.55866 -30.55031 -29.31834 -26.34923 -24.45809 -24.01165 -22.21580 -21.93924 -19.95356 -19.51718 -17.90959 -17.18547 -16.38433 -15.78719 -15.35644 -15.27784 -14.84589 -14.51631 -14.29936 -14.07773 -13.81598 -13.61682 -13.47287 -12.93974 -12.45752 -12.30376 -11.89726 -11.70309 -11.57063 -11.17288 -11.10586 -10.98628 -10.55358 -10.49446 -10.25896 -10.22426 -10.12327 -9.60347 -9.29949 -8.88568 -8.29175 -7.65793 -7.55693 -6.21900 -4.67614 1.04186 1.18342 3.11672 3.18789 3.21933 3.46635 3.78412 4.07174 4.36312 4.53184 4.55493 4.66465 4.79546 4.92191 5.03333 5.08661 5.19621 5.28266 5.33993 5.43883 5.60265 5.64402 5.70159 5.73277 5.75066 5.83206 5.88980 5.92906 6.15315 6.26789 6.46596 6.54899 6.71983 6.87621 7.03828 7.40255 7.89478 7.91706 8.06684 8.29916 8.99446 9.49987 10.56504 10.75008 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052849 B = 0.003271 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.680649 B = 8559.146839 C = 8727.938044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.762 5.762 12 C 0.155 3.845 13 C -0.124 4.124 14 C 0.055 3.945 15 N -0.486 5.486 16 C 0.164 3.836 17 C -0.230 4.230 18 C 0.121 3.879 19 N -0.514 5.514 20 C 0.118 3.882 21 C -0.200 4.200 22 C 0.064 3.936 23 C -0.127 4.127 24 H 0.268 0.732 25 H 0.380 0.620 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.137 0.863 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.136 0.864 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 -16.537 -1.124 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.416 5.416 12 C 0.048 3.952 13 C -0.163 4.163 14 C -0.072 4.072 15 N -0.200 5.200 16 C 0.056 3.944 17 C -0.254 4.254 18 C -0.036 4.036 19 N -0.225 5.225 20 C -0.038 4.038 21 C -0.222 4.222 22 C -0.061 4.061 23 C -0.166 4.166 24 H 0.079 0.921 25 H 0.212 0.788 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.155 0.845 32 H 0.170 0.830 33 H 0.172 0.828 34 H 0.154 0.846 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.603 -17.119 -1.438 17.254 hybrid contribution 0.805 1.666 0.412 1.896 sum 2.408 -15.453 -1.026 15.673 Atomic orbital electron populations 1.70014 1.07043 1.27265 1.35346 1.25704 0.94615 1.00290 0.92607 0.86383 0.80158 0.81434 0.78836 1.19749 1.20469 1.18927 1.20893 0.93587 0.89446 1.54363 0.91475 1.18218 0.87219 0.82459 0.76181 1.90595 1.14060 1.86794 1.54932 1.46172 1.08458 1.04558 1.82391 1.20493 0.95757 0.84490 0.94442 1.21910 0.99411 0.93029 1.01903 1.22282 1.00027 0.98306 0.86586 1.58759 1.41427 1.00461 1.19317 1.19361 0.89961 0.91457 0.93622 1.22297 1.06113 0.98015 0.98926 1.22556 0.92849 0.92909 0.95276 1.67710 1.19425 1.36445 0.98885 1.22573 0.93819 0.90384 0.97044 1.21823 1.04775 0.98316 0.97323 1.22286 0.93403 0.90856 0.99560 1.22088 1.01089 0.94165 0.99307 0.92119 0.78837 0.90862 0.90580 0.90856 0.89916 0.93113 0.84476 0.83009 0.82848 0.84634 0.93361 0.90097 0.90056 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.73 11.83 55.55 0.66 -22.07 16 2 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 3 Si 0.91 19.88 29.56 -169.99 -5.02 14.86 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.55 -15.13 9.54 -35.63 -0.34 -15.47 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 9 C 0.56 15.29 7.72 -12.99 -0.10 15.19 16 10 O -0.58 -18.23 14.68 5.20 0.08 -18.15 16 11 N -0.76 -16.24 5.08 -55.09 -0.28 -16.52 16 12 C 0.15 2.78 2.52 -67.80 -0.17 2.61 16 13 C -0.12 -1.68 5.57 -26.65 -0.15 -1.83 16 14 C 0.05 0.65 4.17 -3.83 -0.02 0.63 16 15 N -0.49 -6.13 4.70 -170.95 -0.80 -6.93 16 16 C 0.16 1.96 5.65 -83.61 -0.47 1.49 16 17 C -0.23 -2.49 8.88 -39.25 -0.35 -2.84 16 18 C 0.12 1.28 11.17 -17.61 -0.20 1.09 16 19 N -0.51 -6.16 10.36 -13.35 -0.14 -6.30 16 20 C 0.12 1.26 11.17 -17.61 -0.20 1.06 16 21 C -0.20 -2.20 9.25 -39.24 -0.36 -2.57 16 22 C 0.06 0.88 5.26 -3.83 -0.02 0.85 16 23 C -0.13 -2.11 5.68 -26.65 -0.15 -2.26 16 24 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 25 H 0.38 7.17 8.58 -40.82 -0.35 6.82 16 26 H 0.07 1.52 7.57 -51.93 -0.39 1.13 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.08 0.83 7.01 -51.93 -0.36 0.47 16 30 H 0.05 0.60 7.78 -51.93 -0.40 0.20 16 31 H 0.14 1.26 5.96 -52.48 -0.31 0.94 16 32 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.14 1.32 7.24 -52.49 -0.38 0.94 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.98 6.78 -51.93 -0.35 0.63 16 37 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 313.50 15.07 4.72 4.72 Total: -1.00 -33.84 313.50 -8.47 -42.31 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.06 Total: 7.79 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.62 Total: 0.29 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.56 Total: -51.82 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.08 Total: -18.15 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.84 -8.47 -42.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522811611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.913 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds