Wall clock time and date at job start Mon Mar 30 2020 02:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86796 * 119.99739 * 2 1 4 4 H 1.48499 * 109.46920 * 269.99401 * 3 2 1 5 5 H 1.48505 * 109.47421 * 29.99416 * 3 2 1 6 6 H 1.48501 * 109.47244 * 149.99458 * 3 2 1 7 7 C 1.40050 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00287 * 180.02562 * 7 2 1 9 9 C 1.46374 * 119.99756 * 0.02562 * 7 2 1 10 10 O 1.21691 * 120.00038 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00027 * 179.97438 * 9 7 2 12 12 C 1.46505 * 120.00038 * 180.02562 * 11 9 7 13 13 C 1.53119 * 109.51821 * 204.99998 * 12 11 9 14 14 C 1.53044 * 109.27589 * 182.37494 * 13 12 11 15 15 N 1.46847 * 109.51335 * 59.18419 * 14 13 12 16 16 C 1.39166 * 110.99934 * 174.15594 * 15 14 13 17 17 C 1.39471 * 120.86673 * 359.72086 * 16 15 14 18 18 C 1.37895 * 119.06650 * 179.72756 * 17 16 15 19 19 N 1.31994 * 120.84452 * 0.56183 * 18 17 16 20 20 C 1.31996 * 121.90969 * 359.71551 * 19 18 17 21 21 C 1.37894 * 120.84236 * 359.97438 * 20 19 18 22 22 C 1.46847 * 111.20163 * 298.24410 * 15 14 13 23 23 C 1.53041 * 109.51486 * 61.75514 * 22 15 14 24 24 H 0.96994 * 120.00234 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00390 * 0.02562 * 11 9 7 26 26 H 1.08993 * 109.52098 * 325.12265 * 12 11 9 27 27 H 1.09000 * 109.50507 * 62.44159 * 13 12 11 28 28 H 1.08999 * 109.54263 * 302.33092 * 13 12 11 29 29 H 1.09002 * 109.46396 * 179.19729 * 14 13 12 30 30 H 1.08994 * 109.46485 * 299.17654 * 14 13 12 31 31 H 1.08005 * 120.46924 * 359.97438 * 17 16 15 32 32 H 1.07999 * 119.58110 * 180.29583 * 18 17 16 33 33 H 1.07998 * 119.58327 * 180.02562 * 20 19 18 34 34 H 1.07994 * 120.46996 * 179.97438 * 21 20 19 35 35 H 1.09005 * 109.46836 * 301.74653 * 22 15 14 36 36 H 1.08995 * 109.45748 * 181.76188 * 22 15 14 37 37 H 1.08996 * 109.50341 * 180.87808 * 23 22 15 38 38 H 1.08996 * 109.50165 * 60.75338 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.4882 2.0463 -1.4001 5 1 1.4380 2.6528 0.6999 6 1 3.5382 1.4403 0.7002 7 6 2.0071 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 -0.0004 11 7 1.9491 -3.6476 0.0005 12 6 1.2166 -4.9164 0.0000 13 6 2.0934 -6.0136 0.6100 14 6 1.3460 -7.3479 0.5526 15 7 1.0265 -7.6714 -0.8437 16 6 0.4631 -8.9399 -0.9453 17 6 0.2718 -9.7307 0.1875 18 6 -0.2949 -10.9797 0.0446 19 7 -0.6439 -11.4325 -1.1451 20 6 -0.4740 -10.7170 -2.2413 21 6 0.0801 -9.4557 -2.1834 22 6 0.1465 -6.6560 -1.4362 23 6 0.8580 -5.3011 -1.4381 24 1 -0.4850 0.8400 -0.0004 25 1 2.9191 -3.6477 0.0009 26 1 0.3045 -4.8106 0.5871 27 1 2.3167 -5.7660 1.6477 28 1 3.0231 -6.0928 0.0465 29 1 1.9732 -8.1339 0.9732 30 1 0.4234 -7.2724 1.1281 31 1 0.5597 -9.3684 1.1633 32 1 -0.4512 -11.5971 0.9168 33 1 -0.7736 -11.1244 -3.1956 34 1 0.2167 -8.8757 -3.0841 35 1 -0.7704 -6.5838 -0.8510 36 1 -0.0973 -6.9396 -2.4599 37 1 0.1989 -4.5445 -1.8636 38 1 1.7680 -5.3688 -2.0343 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522811611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:31 Heat of formation + Delta-G solvation = -24.329390 kcal Electronic energy + Delta-G solvation = -20742.144655 eV Core-core repulsion = 17583.075541 eV Total energy + Delta-G solvation = -3159.069114 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.74280 -40.09015 -38.82825 -36.03416 -34.56893 -33.05681 -32.73661 -31.56381 -30.57157 -28.31183 -25.55851 -25.16798 -23.24290 -23.02040 -21.60949 -21.05462 -19.15430 -18.77151 -17.47241 -17.27518 -16.75416 -16.51199 -16.02639 -15.83978 -15.62487 -15.38804 -14.90632 -14.62473 -14.55566 -14.33223 -14.16485 -14.02505 -13.21815 -13.15476 -12.79496 -12.65012 -12.59408 -12.48856 -12.29459 -12.04289 -11.82777 -11.49699 -11.26374 -10.93190 -10.44116 -10.09617 -9.83887 -9.45002 -9.24383 -8.28797 -6.85124 0.24404 0.30734 1.40068 1.41206 1.56414 2.24279 2.47814 2.50681 2.93474 3.06816 3.58151 3.64489 3.68843 3.73787 3.96670 4.03638 4.10697 4.13220 4.25027 4.33575 4.36969 4.51664 4.59134 4.63049 4.70000 4.75954 4.85965 4.93430 5.01843 5.08145 5.21242 5.29929 5.32416 5.65104 5.83793 5.89658 6.11156 6.25416 6.31282 6.87475 7.10766 7.57474 8.50805 8.68373 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.052849 B = 0.003271 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.680649 B = 8559.146839 C = 8727.938044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.249 1.249 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.540 3.460 10 O -0.631 6.631 11 N -0.750 5.750 12 C 0.151 3.849 13 C -0.111 4.111 14 C 0.057 3.943 15 N -0.486 5.486 16 C 0.144 3.856 17 C -0.231 4.231 18 C 0.115 3.885 19 N -0.534 5.534 20 C 0.113 3.887 21 C -0.204 4.204 22 C 0.075 3.925 23 C -0.118 4.118 24 H 0.273 0.727 25 H 0.395 0.605 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.049 0.951 31 H 0.154 0.846 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.146 0.854 35 H 0.036 0.964 36 H 0.097 0.903 37 H 0.040 0.960 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 -17.504 -0.997 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.172 1.172 7 C -0.611 4.611 8 H 0.105 0.895 9 C 0.344 3.656 10 O -0.518 6.518 11 N -0.403 5.403 12 C 0.045 3.955 13 C -0.149 4.149 14 C -0.070 4.070 15 N -0.200 5.200 16 C 0.037 3.963 17 C -0.253 4.253 18 C -0.042 4.042 19 N -0.245 5.245 20 C -0.043 4.043 21 C -0.227 4.227 22 C -0.051 4.051 23 C -0.157 4.157 24 H 0.083 0.917 25 H 0.228 0.772 26 H 0.055 0.945 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.067 0.933 31 H 0.171 0.829 32 H 0.194 0.806 33 H 0.195 0.805 34 H 0.163 0.837 35 H 0.054 0.946 36 H 0.115 0.885 37 H 0.059 0.941 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.569 -18.152 -1.310 18.546 hybrid contribution 0.176 1.850 0.369 1.895 sum 3.745 -16.302 -0.942 16.753 Atomic orbital electron populations 1.70185 1.09486 1.28845 1.36663 1.26953 0.95505 1.04926 0.91254 0.85039 0.78803 0.75213 0.79360 1.18716 1.19916 1.17202 1.21450 0.94724 0.90233 1.54717 0.89536 1.18553 0.86823 0.84352 0.75839 1.90551 1.16179 1.87929 1.57141 1.45847 1.09149 1.04460 1.80847 1.20667 0.95123 0.84419 0.95253 1.21801 0.98948 0.92043 1.02090 1.22324 1.00252 0.97912 0.86496 1.58748 1.41265 1.00404 1.19611 1.19515 0.91042 0.91144 0.94568 1.22502 1.05631 0.97926 0.99287 1.22999 0.92217 0.93186 0.95760 1.67761 1.19962 1.37153 0.99656 1.22982 0.93283 0.90217 0.97796 1.22012 1.04516 0.98635 0.97511 1.22091 0.92681 0.89708 1.00592 1.21895 1.00797 0.94934 0.98074 0.91666 0.77159 0.94454 0.89705 0.89568 0.87119 0.93314 0.82877 0.80554 0.80505 0.83651 0.94585 0.88465 0.94069 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.22 11.83 21.84 0.26 -49.97 16 2 C 0.03 1.59 5.50 85.30 0.47 2.05 16 3 Si 1.00 40.68 29.56 68.60 2.03 42.71 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.57 -32.23 9.54 24.83 0.24 -31.99 16 8 H 0.09 4.34 7.85 -2.91 -0.02 4.32 16 9 C 0.54 30.82 7.72 86.36 0.67 31.48 16 10 O -0.63 -41.73 14.68 -4.32 -0.06 -41.80 16 11 N -0.75 -32.55 5.08 -446.44 -2.27 -34.82 16 12 C 0.15 5.54 2.52 45.07 0.11 5.66 16 13 C -0.11 -2.82 5.57 30.65 0.17 -2.65 16 14 C 0.06 1.23 4.17 86.33 0.36 1.59 16 15 N -0.49 -11.45 4.70 -694.75 -3.26 -14.71 16 16 C 0.14 3.18 5.65 38.58 0.22 3.40 16 17 C -0.23 -4.45 8.88 22.49 0.20 -4.25 16 18 C 0.11 2.18 11.17 84.59 0.94 3.12 16 19 N -0.53 -11.77 10.36 -196.16 -2.03 -13.80 16 20 C 0.11 2.19 11.17 84.59 0.94 3.13 16 21 C -0.20 -4.14 9.25 22.49 0.21 -3.93 16 22 C 0.08 2.03 5.26 86.33 0.45 2.49 16 23 C -0.12 -4.00 5.68 30.65 0.17 -3.83 16 24 H 0.27 15.15 8.29 -92.71 -0.77 14.38 16 25 H 0.39 14.71 8.58 -92.71 -0.80 13.91 16 26 H 0.04 1.64 7.57 -2.39 -0.02 1.62 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 29 H 0.11 1.85 7.01 -2.39 -0.02 1.83 16 30 H 0.05 1.09 7.78 -2.39 -0.02 1.07 16 31 H 0.15 2.36 5.96 -2.91 -0.02 2.34 16 32 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.18 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.15 2.57 7.24 -2.91 -0.02 2.54 16 35 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.10 2.30 6.78 -2.39 -0.02 2.28 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -76.45 313.50 0.10 -76.35 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.28 Total: 29.76 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 5.16 Total: 6.28 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -7.31 Total: -113.30 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -0.06 Total: -41.80 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -76.45 0.10 -76.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522811611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.019 kcal (2) G-P(sol) polarization free energy of solvation -76.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds