Wall clock time and date at job start Mon Mar 30 2020 02:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 120.00274 * 2 1 4 4 H 1.48504 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47275 * 300.00085 * 3 2 1 6 6 H 1.48499 * 109.47205 * 60.00093 * 3 2 1 7 7 C 1.37877 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.53035 * 109.45890 * 180.02562 * 9 7 2 11 11 C 1.53195 * 109.31089 * 181.37412 * 10 9 7 12 12 N 1.46926 * 108.77168 * 305.35546 * 11 10 9 13 13 C 1.34774 * 120.63415 * 233.58635 * 12 11 10 14 14 O 1.21515 * 120.00194 * 180.17505 * 13 12 11 15 15 C 1.48189 * 119.99984 * 0.17281 * 13 12 11 16 16 C 1.39026 * 119.68680 * 157.99263 * 15 13 12 17 17 C 1.39455 * 118.95513 * 179.97438 * 16 15 13 18 18 N 1.39198 * 120.83270 * 180.02562 * 17 16 15 19 19 C 1.39417 * 118.33546 * 0.04337 * 17 16 15 20 20 C 1.38232 * 119.26189 * 359.97438 * 19 17 16 21 21 N 1.31649 * 120.99525 * 0.02562 * 20 19 17 22 22 C 1.46931 * 118.73547 * 53.86891 * 12 11 10 23 23 C 1.53046 * 109.44697 * 300.06134 * 9 7 2 24 24 H 0.96999 * 119.99747 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.46043 * 60.02417 * 9 7 2 26 26 H 1.08997 * 109.50432 * 61.41804 * 10 9 7 27 27 H 1.09011 * 109.52229 * 301.33414 * 10 9 7 28 28 H 1.09003 * 109.58551 * 185.57375 * 11 10 9 29 29 H 1.08999 * 109.70894 * 65.21871 * 11 10 9 30 30 H 1.07998 * 120.52573 * 0.02562 * 16 15 13 31 31 H 0.96997 * 119.99607 * 180.02562 * 18 17 16 32 32 H 0.96996 * 120.00162 * 0.02562 * 18 17 16 33 33 H 1.08000 * 120.37105 * 180.25466 * 19 17 16 34 34 H 1.08001 * 119.50329 * 179.97438 * 20 19 17 35 35 H 1.08994 * 109.58817 * 65.91962 * 22 12 11 36 36 H 1.08997 * 109.58724 * 186.35028 * 22 12 11 37 37 H 1.09004 * 109.49412 * 298.57243 * 23 9 7 38 38 H 1.09000 * 109.49830 * 58.66607 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2456 -3.6623 -0.0015 11 6 1.4764 -4.9867 -0.0373 12 7 0.5215 -5.0092 1.0791 13 6 0.5101 -6.0357 1.9523 14 8 -0.2868 -6.0442 2.8697 15 6 1.4692 -7.1542 1.7938 16 6 1.7836 -7.9520 2.8880 17 6 2.6877 -9.0007 2.7215 18 7 3.0299 -9.8241 3.7903 19 6 3.2404 -9.2034 1.4577 20 6 2.8775 -8.3663 0.4193 21 7 2.0210 -7.3844 0.6077 22 6 -0.4249 -3.8944 1.2218 23 6 0.3696 -2.5798 1.2469 24 1 -0.4850 0.8401 -0.0004 25 1 0.6250 -2.5563 -0.8922 26 1 2.8549 -3.6197 0.9013 27 1 2.8891 -3.5914 -0.8785 28 1 2.1748 -5.8176 0.0624 29 1 0.9377 -5.0734 -0.9809 30 1 1.3341 -7.7632 3.8517 31 1 3.6604 -10.5498 3.6609 32 1 2.6380 -9.6723 4.6644 33 1 3.9409 -10.0083 1.2908 34 1 3.3036 -8.5195 -0.5612 35 1 -1.1157 -3.8914 0.3787 36 1 -0.9814 -4.0044 2.1525 37 1 0.9970 -2.5477 2.1377 38 1 -0.3228 -1.7381 1.2585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528095699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:08 Heat of formation + Delta-G solvation = 9.297367 kcal Electronic energy + Delta-G solvation = -21169.494283 eV Core-core repulsion = 18011.883335 eV Total energy + Delta-G solvation = -3157.610948 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.66446 -38.92331 -36.68624 -35.65998 -33.42017 -31.57067 -30.89266 -30.24279 -29.56367 -26.31060 -24.48956 -23.30542 -22.52547 -22.04051 -20.19381 -18.69484 -17.75339 -17.21350 -16.57792 -16.06126 -15.76833 -15.21244 -15.01672 -14.63443 -14.45243 -14.08255 -13.73727 -13.33735 -13.00537 -12.69049 -12.49782 -12.15462 -11.91649 -11.87889 -11.39591 -11.07386 -10.90361 -10.55889 -10.28737 -10.01051 -9.85376 -9.51511 -9.47907 -9.24158 -8.82913 -8.61309 -8.30807 -8.16935 -7.85742 -5.95125 -4.01528 0.78014 1.34214 3.03163 3.29077 3.31767 3.39956 3.43706 3.60066 3.93318 4.34032 4.47073 4.65272 4.82755 5.11010 5.23060 5.34161 5.56031 5.70973 5.81176 5.93169 6.08751 6.15234 6.29395 6.34894 6.46879 6.53674 6.75591 6.89399 6.98517 7.04616 7.11899 7.31042 7.31737 7.43259 7.76716 7.84485 8.00841 8.05741 8.15145 8.48935 8.59629 9.02368 9.63117 11.10089 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.031676 B = 0.004171 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.731184 B = 6711.428742 C = 7036.946184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.046 3.954 10 C -0.124 4.124 11 C 0.074 3.926 12 N -0.573 5.573 13 C 0.559 3.441 14 O -0.553 6.553 15 C 0.134 3.866 16 C -0.192 4.192 17 C 0.245 3.755 18 N -0.864 5.864 19 C -0.240 4.240 20 C 0.132 3.868 21 N -0.486 5.486 22 C 0.105 3.895 23 C -0.121 4.121 24 H 0.259 0.741 25 H 0.027 0.973 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.131 0.869 29 H 0.059 0.941 30 H 0.142 0.858 31 H 0.402 0.598 32 H 0.403 0.597 33 H 0.133 0.867 34 H 0.161 0.839 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.179 -19.362 3.567 20.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.027 3.973 10 C -0.163 4.163 11 C -0.048 4.048 12 N -0.302 5.302 13 C 0.345 3.655 14 O -0.432 6.432 15 C -0.003 4.003 16 C -0.218 4.218 17 C 0.132 3.868 18 N -0.404 5.404 19 C -0.265 4.265 20 C -0.025 4.025 21 N -0.202 5.202 22 C -0.016 4.016 23 C -0.159 4.159 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.230 0.770 32 H 0.232 0.768 33 H 0.151 0.849 34 H 0.178 0.822 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.056 0.944 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.345 -18.628 3.323 19.663 hybrid contribution 0.860 0.230 0.937 1.292 sum 6.205 -18.398 4.260 19.878 Atomic orbital electron populations 1.69862 1.05836 1.26249 1.51067 1.24975 0.94853 0.99022 0.95215 0.86576 0.80145 0.83993 0.77507 1.19884 1.21095 1.21113 1.21264 0.92913 0.90672 1.50010 0.92733 1.18673 0.92747 0.91806 0.94025 1.22029 0.98885 0.94871 1.00488 1.22952 0.92763 1.01371 0.87722 1.48141 1.34893 1.19960 1.27201 1.17931 0.83239 0.81983 0.82357 1.90726 1.40340 1.79027 1.33128 1.21032 0.94966 0.94958 0.89357 1.21473 1.01921 0.97206 1.01222 1.17903 0.91305 0.89204 0.88431 1.42362 1.52034 1.35601 1.10372 1.21680 1.06899 1.05296 0.92666 1.22668 0.92340 0.88823 0.98681 1.67779 1.11246 1.18246 1.22905 1.22073 0.91506 0.86622 1.01432 1.22078 0.99935 0.94576 0.99329 0.93087 0.95485 0.93456 0.92330 0.85214 0.92312 0.84014 0.76958 0.76805 0.84903 0.82154 0.91993 0.90633 0.94407 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.37 11.30 55.43 0.63 -24.74 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.04 8.56 -34.44 -0.29 -14.34 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 10 C -0.12 -2.63 5.30 -26.61 -0.14 -2.77 16 11 C 0.07 1.38 5.99 -3.71 -0.02 1.36 16 12 N -0.57 -11.46 2.97 -173.48 -0.51 -11.98 16 13 C 0.56 10.90 7.61 -12.17 -0.09 10.81 16 14 O -0.55 -11.93 15.94 5.35 0.09 -11.85 16 15 C 0.13 2.14 6.45 -83.06 -0.54 1.61 16 16 C -0.19 -2.57 9.51 -38.84 -0.37 -2.94 16 17 C 0.25 2.49 6.81 -83.62 -0.57 1.92 16 18 N -0.86 -5.53 9.08 32.52 0.30 -5.23 16 19 C -0.24 -2.20 10.00 -39.14 -0.39 -2.59 16 20 C 0.13 1.42 11.17 -17.63 -0.20 1.22 16 21 N -0.49 -7.03 6.37 -9.89 -0.06 -7.09 16 22 C 0.10 2.24 6.46 -3.48 -0.02 2.22 16 23 C -0.12 -2.92 5.17 -26.38 -0.14 -3.06 16 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 28 H 0.13 2.21 3.99 -78.71 -0.31 1.90 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.14 1.86 7.80 -52.49 -0.41 1.45 16 31 H 0.40 1.59 8.86 -40.82 -0.36 1.23 16 32 H 0.40 2.11 8.86 -40.82 -0.36 1.75 16 33 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.61 7.00 -51.93 -0.36 1.24 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.10 2.74 6.03 -51.93 -0.31 2.43 16 LS Contribution 310.46 15.07 4.68 4.68 Total: -1.00 -32.16 310.46 -8.02 -40.17 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.05 Total: 3.72 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -3.06 Total: -4.04 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.34 Total: -49.04 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.16 -8.02 -40.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528095699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.468 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds