Wall clock time and date at job start Mon Mar 30 2020 02:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86790 * 120.00274 * 2 1 4 4 H 1.48504 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47275 * 300.00085 * 3 2 1 6 6 H 1.48499 * 109.47205 * 60.00093 * 3 2 1 7 7 C 1.37877 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.53035 * 109.45890 * 180.02562 * 9 7 2 11 11 C 1.53195 * 109.31089 * 181.37412 * 10 9 7 12 12 N 1.46926 * 108.77168 * 305.35546 * 11 10 9 13 13 C 1.34774 * 120.63415 * 233.58635 * 12 11 10 14 14 O 1.21515 * 120.00194 * 180.17505 * 13 12 11 15 15 C 1.48189 * 119.99984 * 0.17281 * 13 12 11 16 16 C 1.39026 * 119.68680 * 157.99263 * 15 13 12 17 17 C 1.39455 * 118.95513 * 179.97438 * 16 15 13 18 18 N 1.39198 * 120.83270 * 180.02562 * 17 16 15 19 19 C 1.39417 * 118.33546 * 0.04337 * 17 16 15 20 20 C 1.38232 * 119.26189 * 359.97438 * 19 17 16 21 21 N 1.31649 * 120.99525 * 0.02562 * 20 19 17 22 22 C 1.46931 * 118.73547 * 53.86891 * 12 11 10 23 23 C 1.53046 * 109.44697 * 300.06134 * 9 7 2 24 24 H 0.96999 * 119.99747 * 0.02562 * 1 2 3 25 25 H 1.08991 * 109.46043 * 60.02417 * 9 7 2 26 26 H 1.08997 * 109.50432 * 61.41804 * 10 9 7 27 27 H 1.09011 * 109.52229 * 301.33414 * 10 9 7 28 28 H 1.09003 * 109.58551 * 185.57375 * 11 10 9 29 29 H 1.08999 * 109.70894 * 65.21871 * 11 10 9 30 30 H 1.07998 * 120.52573 * 0.02562 * 16 15 13 31 31 H 0.96997 * 119.99607 * 180.02562 * 18 17 16 32 32 H 0.96996 * 120.00162 * 0.02562 * 18 17 16 33 33 H 1.08000 * 120.37105 * 180.25466 * 19 17 16 34 34 H 1.08001 * 119.50329 * 179.97438 * 20 19 17 35 35 H 1.08994 * 109.58817 * 65.91962 * 22 12 11 36 36 H 1.08997 * 109.58724 * 186.35028 * 22 12 11 37 37 H 1.09004 * 109.49412 * 298.57243 * 23 9 7 38 38 H 1.09000 * 109.49830 * 58.66607 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2456 -3.6623 -0.0015 11 6 1.4764 -4.9867 -0.0373 12 7 0.5215 -5.0092 1.0791 13 6 0.5101 -6.0357 1.9523 14 8 -0.2868 -6.0442 2.8697 15 6 1.4692 -7.1542 1.7938 16 6 1.7836 -7.9520 2.8880 17 6 2.6877 -9.0007 2.7215 18 7 3.0299 -9.8241 3.7903 19 6 3.2404 -9.2034 1.4577 20 6 2.8775 -8.3663 0.4193 21 7 2.0210 -7.3844 0.6077 22 6 -0.4249 -3.8944 1.2218 23 6 0.3696 -2.5798 1.2469 24 1 -0.4850 0.8401 -0.0004 25 1 0.6250 -2.5563 -0.8922 26 1 2.8549 -3.6197 0.9013 27 1 2.8891 -3.5914 -0.8785 28 1 2.1748 -5.8176 0.0624 29 1 0.9377 -5.0734 -0.9809 30 1 1.3341 -7.7632 3.8517 31 1 3.6604 -10.5498 3.6609 32 1 2.6380 -9.6723 4.6644 33 1 3.9409 -10.0083 1.2908 34 1 3.3036 -8.5195 -0.5612 35 1 -1.1157 -3.8914 0.3787 36 1 -0.9814 -4.0044 2.1525 37 1 0.9970 -2.5477 2.1377 38 1 -0.3228 -1.7381 1.2585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528095699.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:07 Heat of formation + Delta-G solvation = -12.462253 kcal Electronic energy + Delta-G solvation = -21170.437851 eV Core-core repulsion = 18011.883335 eV Total energy + Delta-G solvation = -3158.554516 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80830 -40.24436 -38.39518 -36.47659 -35.29732 -33.02104 -32.44579 -31.59751 -30.63181 -28.14785 -25.91433 -24.45488 -23.89619 -23.68739 -21.71854 -20.28713 -18.80158 -18.36883 -18.31270 -17.36951 -16.82013 -16.52379 -16.45929 -16.33111 -15.60835 -15.14530 -14.96398 -14.74316 -14.67955 -14.52141 -14.13807 -13.84644 -13.33004 -13.03146 -12.82884 -12.78802 -12.53255 -12.36139 -12.12874 -11.91999 -11.44306 -11.29298 -11.20025 -10.82366 -10.43293 -10.20119 -9.86469 -9.52687 -8.95637 -8.06383 -6.21191 -0.22477 0.49188 1.40799 1.42791 1.53919 1.73133 2.00455 2.44539 2.82653 2.91082 3.18616 3.19337 3.74351 4.01484 4.14455 4.21536 4.38483 4.41471 4.48001 4.52336 4.63860 4.75357 4.77896 4.90165 5.01467 5.02632 5.15987 5.22816 5.31609 5.46430 5.50626 5.64074 5.80672 5.98372 6.12070 6.34649 6.39252 6.47671 6.85464 6.88612 6.90036 7.15236 7.46807 8.97113 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.031676 B = 0.004171 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.731184 B = 6711.428742 C = 7036.946184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.283 1.283 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.043 3.957 10 C -0.115 4.115 11 C 0.082 3.918 12 N -0.581 5.581 13 C 0.555 3.445 14 O -0.584 6.584 15 C 0.106 3.894 16 C -0.202 4.202 17 C 0.250 3.750 18 N -0.846 5.846 19 C -0.223 4.223 20 C 0.129 3.871 21 N -0.513 5.513 22 C 0.115 3.885 23 C -0.109 4.109 24 H 0.261 0.739 25 H 0.002 0.998 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.157 0.843 29 H 0.061 0.939 30 H 0.134 0.866 31 H 0.418 0.582 32 H 0.410 0.590 33 H 0.175 0.825 34 H 0.196 0.804 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.022 0.978 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.566 -21.773 3.329 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.570 4.570 8 H 0.070 0.930 9 C 0.025 3.975 10 C -0.153 4.153 11 C -0.039 4.039 12 N -0.310 5.310 13 C 0.343 3.657 14 O -0.466 6.466 15 C -0.030 4.030 16 C -0.229 4.229 17 C 0.134 3.866 18 N -0.386 5.386 19 C -0.248 4.248 20 C -0.028 4.028 21 N -0.229 5.229 22 C -0.008 4.008 23 C -0.147 4.147 24 H 0.070 0.930 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.173 0.827 29 H 0.080 0.920 30 H 0.152 0.848 31 H 0.250 0.750 32 H 0.240 0.760 33 H 0.192 0.808 34 H 0.213 0.787 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.041 0.959 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.763 -21.086 3.101 22.682 hybrid contribution 0.170 0.832 1.055 1.355 sum 7.932 -20.254 4.157 22.145 Atomic orbital electron populations 1.69996 1.07118 1.27045 1.51471 1.25748 0.95696 1.02361 0.94863 0.85568 0.79106 0.79824 0.77519 1.19175 1.20506 1.20898 1.21614 0.93041 0.92115 1.50242 0.92967 1.18648 0.93189 0.92766 0.92935 1.21902 0.98171 0.94712 1.00537 1.23054 0.92801 1.00708 0.87373 1.48177 1.34990 1.19815 1.28032 1.18569 0.83369 0.82504 0.81274 1.90684 1.41773 1.79901 1.34218 1.20492 0.96297 0.95053 0.91145 1.21458 1.03055 0.98199 1.00235 1.17954 0.90245 0.88474 0.89912 1.42361 1.51494 1.34924 1.09801 1.22098 1.06093 1.05256 0.91346 1.23274 0.90959 0.87829 1.00707 1.67453 1.12760 1.20508 1.22183 1.21771 0.91524 0.86130 1.01336 1.21832 0.99216 0.95278 0.98398 0.93028 0.97990 0.94265 0.91198 0.82697 0.92045 0.84795 0.75047 0.76017 0.80783 0.78732 0.91801 0.91005 0.95938 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.63 11.30 21.45 0.24 -53.38 16 2 C 0.01 0.66 5.30 84.65 0.45 1.11 16 3 Si 0.95 44.31 29.54 68.60 2.03 46.33 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.53 -29.90 8.56 25.60 0.22 -29.68 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 2.23 2.06 -11.51 -0.02 2.20 16 10 C -0.11 -4.89 5.30 30.67 0.16 -4.73 16 11 C 0.08 3.05 5.99 86.36 0.52 3.57 16 12 N -0.58 -23.81 2.97 -821.08 -2.43 -26.24 16 13 C 0.55 22.10 7.61 86.89 0.66 22.77 16 14 O -0.58 -26.13 15.94 -3.76 -0.06 -26.19 16 15 C 0.11 3.33 6.45 41.83 0.27 3.60 16 16 C -0.20 -5.19 9.51 22.75 0.22 -4.97 16 17 C 0.25 4.26 6.81 38.55 0.26 4.52 16 18 N -0.85 -7.64 9.08 -51.02 -0.46 -8.10 16 19 C -0.22 -3.05 10.00 22.55 0.23 -2.82 16 20 C 0.13 2.28 11.17 84.72 0.95 3.23 16 21 N -0.51 -13.86 6.37 -185.21 -1.18 -15.04 16 22 C 0.11 5.12 6.46 86.51 0.56 5.67 16 23 C -0.11 -5.51 5.17 30.82 0.16 -5.35 16 24 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.07 2.78 8.14 -2.38 -0.02 2.76 16 28 H 0.16 5.11 3.99 -55.28 -0.22 4.89 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.13 3.52 7.80 -2.91 -0.02 3.49 16 31 H 0.42 1.37 8.86 -92.71 -0.82 0.55 16 32 H 0.41 3.06 8.86 -92.71 -0.82 2.23 16 33 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 34 H 0.20 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.07 3.22 7.00 -2.39 -0.02 3.20 16 37 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 4.24 6.03 -2.39 -0.01 4.23 16 Total: -1.00 -72.34 310.46 2.00 -70.34 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -0.75 Total: 13.18 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 4.62 Total: -0.90 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -3.84 Total: -102.77 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.06 Total: -26.19 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -72.34 2.00 -70.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528095699.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.878 kcal (2) G-P(sol) polarization free energy of solvation -72.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds